mRNA_S-firma_F_contig10083.159.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10083.159.1
Unique NamemRNA_S-firma_F_contig10083.159.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10083.159.1 vs. uniprot
Match: D7G5C3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5C3_ECTSI)

HSP 1 Score: 444 bits (1141), Expect = 1.270e-147
Identity = 240/309 (77.67%), Postives = 257/309 (83.17%), Query Frame = 3
Query:  141 MVSLDEDQVRRAARALLKHVKSSAVGKPSLIEEDGEVVLAQISLHKIPGNVSAKPIPIAIPHPLRQRGDCDMCLIVKDNAKAWIKEMVENEPVEGLTKVIKLDKLRTQYKDFKDRRQLLSQFDLFLADDRILPMLTKALGKTFLKAKKQPVPIKLERRSSLAQQIARARDSAFLVASYGDCWAVKLANTGMAEEQVVENLVAGIAAVVEKLPRKWKNVKAINIKSSSSVALPVYSNIGDLPPAPPAGKAE-ATKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKPRPLIRQQLNKLKQEARAEKAAA 1064
            MVS DE QVRRAARALLKHV SSA GK SLIE++GEVVLAQISLHKIPG+V AKP+PIAIPHPLR+R DCDMCLIVKDNAK WIKEM E EPVEGLTK+IKLDKLRTQYKDFKDRR+LLSQFDLFLADDRILPMLTKALGKTFLK KKQPVPIKLERR+S A+QIARARDSAFLV S+GDCWAVKLANT M E+QVVENL+ G+AAVVEK+PRKWKNVKAINIK S SVALPVYSNIGDLPPAP A KA  A KE                             RKPRPLIRQQLNKLK+EA+AEKAA+
Sbjct:    1 MVSFDEAQVRRAARALLKHVNSSAAGKQSLIEDEGEVVLAQISLHKIPGDVKAKPVPIAIPHPLRKREDCDMCLIVKDNAKVWIKEMAEKEPVEGLTKIIKLDKLRTQYKDFKDRRELLSQFDLFLADDRILPMLTKALGKTFLKVKKQPVPIKLERRASFAKQIARARDSAFLVGSHGDCWAVKLANTSMTEDQVVENLMTGVAAVVEKIPRKWKNVKAINIKCSHSVALPVYSNIGDLPPAPSAKKATVAGKEEAAGEGEGKEPNSHSQAKK----------RKPRPLIRQQLNKLKEEAKAEKAAS 299          
BLAST of mRNA_S-firma_F_contig10083.159.1 vs. uniprot
Match: A0A7S2CVK6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CVK6_9STRA)

HSP 1 Score: 221 bits (563), Expect = 4.390e-62
Identity = 112/243 (46.09%), Postives = 161/243 (66.26%), Query Frame = 3
Query:  126 TNSTTMVSLDEDQVRRAARALLKHVKSSAVGKPSLIEEDGEVVLAQISLHKIPGNVSAKPIPIAIPHPLRQRGDCDMCLIVKDNAKAWIKEMV-ENEPVEGLTKVIKLDKLRTQYKDFKDRRQLLSQFDLFLADDRILPMLTKALGKTFLKAKKQPVPIKLERRSSLAQQIARARDSAFLVASYGDCWAVKLANTGMAEEQVVENLVAGIAAVVEKLPRKWKNVKAINIKSSSSVALPVYSNI 851
            T +T   +L+   +  A +ALL   K  A  +  L   D E +L QI+L +IPGN S KPI +++PHP+    DC MCL +K   K  +K ++ E+ PVEGL K+I LDKLRT Y  F  RR+LL+ +DLFLAD+RILPML KALGKTF   KKQP+P+ + R  SL  ++ RARDS  L+   G C AV + NT M  +++V N+VA  ++ +E +PRKWKN++AI +K++ S++LP+++ +
Sbjct:   50 TQTTKRDNLNTHTITCAVKALLAFHKKKAESERKLPGADDERILIQITLQRIPGNSSPKPIQLSVPHPIHGDSDCQMCLFIKKEDKPLVKSLLMEDNPVEGLAKIITLDKLRTSYARFSQRRELLASYDLFLADERILPMLCKALGKTFFSRKKQPIPLCVTRHESLPHRVRRARDSTSLIIPSGTCVAVIVGNTNMTPKELVANIVAAASSAIEHIPRKWKNIQAIQVKTADSMSLPIFNKL 292          
BLAST of mRNA_S-firma_F_contig10083.159.1 vs. uniprot
Match: A0A7S2SVD8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVD8_9STRA)

HSP 1 Score: 202 bits (515), Expect = 8.490e-56
Identity = 121/229 (52.84%), Postives = 152/229 (66.38%), Query Frame = 3
Query:  171 RAARALLK-HVKSSAVGKPSLIEEDGEVVLAQISLHKIPGNVSAKPIPIAIPHPLRQRGDCDMCLIVKDNAKAWIKEMV-ENEPVEGLTKVIKLDKLRTQYKDFKDRRQLLSQFDLFLADDRILPMLTKALGKTFLKAKKQPVPIKLERRSSLAQQIARARDSAFLVASYGDCWAVKLANTGMAEEQVVENLVAGIAAVVEKLPRKWKNVKAINIKSSSSVALPVYSNI 851
            +A  ALL  H K+ A G   L  E  E V   I L K+P   S KPI + + HPL    DCDMCL +K   K W+KE++ E++PV GL KVI LDKLRT Y  F+ RR+L+S +DLFLADDRILPML K LGKTF   KKQPVP+++ RR +L Q I RARDS +LV   G+  +V + NT M  +Q+VENL+A     V+ +PRKW NV+AI IKS SSVALPV + +
Sbjct:    1 KAFDALLSYHEKAHAAGGDLLGSE--ERVHVTIVLKKVPSKASPKPIRLPLAHPLWSL-DCDMCLFMKTEDKPWVKELLMESKPVPGLKKVITLDKLRTSYARFERRRELISTYDLFLADDRILPMLCKTLGKTFFSRKKQPVPVRI-RRGALPQTIQRARDSTYLVLGGGNNVSVCIGNTSMTRKQLVENLLAATNEAVDHIPRKWANVQAIYIKSDSSVALPVLNKL 225          
BLAST of mRNA_S-firma_F_contig10083.159.1 vs. uniprot
Match: A0A6G0XX31_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XX31_9STRA)

HSP 1 Score: 196 bits (499), Expect = 7.610e-52
Identity = 103/236 (43.64%), Postives = 158/236 (66.95%), Query Frame = 3
Query:  150 LDEDQVRRAARALLKHV--KSSAVGKPSLIEEDGEVVLAQISLHKIPGNVSAKPIPIAIPHPLRQRGDCDMCLIVKDNAKAWIKEMVENEPVEGLTKVIKLDKLRTQYKDFKDRRQLLSQFDLFLADDRILPMLTKALGKTFLKAKKQPVPIKLERRSSLAQQIARARDSAFLVASYGDCWAVKLANTGMAEEQVVENLVAGIAAVVEKLPRKWKNVKAINIKSSSSVALPVYSNI 851
            LD +QVR+A  AL + +  K S   K +L+E D +V+    + + +P   S KP+PIA+P+ +R  GD ++CL VKD+ K  IK  ++N+P+ GLTKV+ + KL+  +  FKD+R+L + +DLFLADDRILP L   LGKTF  AKKQP  + +  + +++  I R      +  S G C+ VK+A+ GM  E+++EN++ G   +VE +P+KWKN+K+INIK+S SVALP+Y+++
Sbjct:    5 LDAEQVRKAVVALKQFIQKKKSQNSKQALVE-DNQVIQIIFTRNTVPAKESLKPVPIALPNNIR--GDGEVCLFVKDSDKDRIKAHLKNDPIPGLTKVMPVKKLKKNFSQFKDKRELKAAYDLFLADDRILPYLKSLLGKTFFDAKKQPTTVNVTGKKNISDHIRRVLAGTEMFVSPGPCFNVKIAHDGMDTEKIIENIIEGTKNIVEHVPKKWKNIKSINIKTSDSVALPIYNSL 237          
BLAST of mRNA_S-firma_F_contig10083.159.1 vs. uniprot
Match: W7TFQ3_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFQ3_9STRA)

HSP 1 Score: 191 bits (484), Expect = 2.630e-49
Identity = 109/254 (42.91%), Postives = 156/254 (61.42%), Query Frame = 3
Query:  150 LDEDQVRRAARALLKH-------VKSSAVGKPSLIEEDGEVVLAQISLHKIPGNVSAKPIPIAIPHPLRQRGDCD-----MCLIVKDNAKAWIKEMVENEPVEGLTKVIKLDKLRTQYKDFKDRRQLLSQFDLFLADDRILPMLTKALGKTFLKAKKQPVPIKL--------ERRSSLAQQIARARDSAFLVASYGDCWAVKLANTGMAEEQVVENLVAGIAAVVEKLPRKWKNVKAINIKSSSSVALPVYSNI 851
            +D  Q  RA  ALL+H       V S    +  L  E G+ +L QI+L KIP  VS KP+P+++PHPL   G  D     +CLIVK++ K  ++  +    ++G+ +V+ L +LRT YK+F++RRQL   FDLFL DDRILP+L KALGKTF   KK PV +KL        +  +++ ++I  A+    L  ++G+C +VK+A T     + V N++AGI A VE  P KWKNV AI++K+SSSVALP+Y  +
Sbjct:   54 VDATQATRAVEALLQHNARHQALVASKKSKQDLLASEAGDYILIQIALAKIPERVSPKPVPLSLPHPLHGSGGDDDEDHAVCLIVKESDKGKVQRALNAMKMDGVREVVGLQELRTDYKEFQERRQLRDAFDLFLVDDRILPLLGKALGKTFFSKKKHPVALKLGGLLSSNPQAMATVGKRIIAAQQRTHLYRNHGNCLSVKVAKTSFRPAEAVANVLAGIEAAVEATPGKWKNVMAISVKTSSSVALPLYQRL 307          
BLAST of mRNA_S-firma_F_contig10083.159.1 vs. uniprot
Match: A0A7S1UKI9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKI9_9STRA)

HSP 1 Score: 184 bits (468), Expect = 3.660e-49
Identity = 100/238 (42.02%), Postives = 157/238 (65.97%), Query Frame = 3
Query:  150 LDEDQVRRAARALLKHVKSSAVGKP--SLIEEDGEVVLAQISLHKIPGNVSAKPIPIAIPHPLRQRGDCD--MCLIVKDNAKAWIKEMVENEPVEGLTKVIKLDKLRTQYKDFKDRRQLLSQFDLFLADDRILPMLTKALGKTFLKAKKQPVPIKLERRSS-LAQQIARARDSAFLVASYGDCWAVKLANTGMAEEQVVENLVAGIAAVVEKLPRKWKNVKAINIKSSSSVALPVYSN 848
            LD   V RA  ALL+H+      +   +L++ + E VL Q +L  +P   S KPI +A+PHP    G+    +CLI K  +   +KE+    P   + KV+ L  LRT+YK ++ RR+L+++F+LF+ADDRILPML KALGK F KAKK P+PIK+ ++ + +A+ +A ARDS +L    G C A+++ +TGM  + + EN+ A + A V ++P+KW+N+ +I++K+++SVALPVY++
Sbjct:    6 LDGPLVARATAALLRHLHEEQAKQRGRALLDPEPETVLLQFALKTVPAIASQKPIRLAVPHPFLGFGEGPPRICLICKQESVNAMKELFRAHPDLHVDKVVGLSALRTEYKRYEKRRELMAEFNLFVADDRILPMLAKALGKIFFKAKKHPLPIKINQKGAKVARDVAAARDSTYLHLVQGPCLALRVGHTGMEADAITENIRAVVPAAVSRIPKKWRNILSIHLKTATSVALPVYAS 243          
BLAST of mRNA_S-firma_F_contig10083.159.1 vs. uniprot
Match: A0A024G4U6_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G4U6_9STRA)

HSP 1 Score: 182 bits (461), Expect = 1.850e-48
Identity = 97/233 (41.63%), Postives = 151/233 (64.81%), Query Frame = 3
Query:  150 LDEDQVRRAARALLKHVKSSAVG--KPSLIEEDGEVVLAQISLHKIPGNVSAKPIPIAIPHPLRQRGDCDMCLIVKDNAKAWIKEMVENEPVEGLTKVIKLDKLRTQYKDFKDRRQLLSQFDLFLADDRILPMLTKALGKTFLKAKKQPVPIKLERRSSLAQQIARARDSAFLVASYGDCWAVKLANTGMAEEQVVENLVAGIAAVVEKLPRKWKNVKAINIKSSSSVALPVY 842
            +DE QVR+A  AL  +++       K  LIEE+ + +   I   KIP   S KPIPI +PH +R++ +  MCL+VKD  K  +K++++ +PVEGLTKV+ L KLR  +  F+DRR L+  +DLFLADDRILP L   +GK F++ KKQPVP+++ R ++  Q +       F+  S G C  +++A+ GM+ +Q+VEN++ G+      + +KW  ++AI++K++ SVALP+Y
Sbjct:    9 MDEAQVRKAVIALQIYIEKQKKDRTKQQLIEEN-QSLSCIIQRKKIPSKASLKPIPIELPHAIRKQPE--MCLLVKDTDKERVKKILKEDPVEGLTKVMTLKKLRKNFTRFEDRRTLVGAYDLFLADDRILPYLKSPVGKVFIRVKKQPVPVRISR-ANFTQNLRAVEKQTFMFVSCGACMNIRIAHFGMSVDQIVENIMVGMQRCASLIGKKWNGIQAIHLKTNESVALPIY 237          
BLAST of mRNA_S-firma_F_contig10083.159.1 vs. uniprot
Match: E1ZQX0_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZQX0_CHLVA)

HSP 1 Score: 178 bits (452), Expect = 1.240e-47
Identity = 109/242 (45.04%), Postives = 155/242 (64.05%), Query Frame = 3
Query:  150 LDEDQVRRAARALLKHVKSSAVGKPSLIEEDGEVVLAQISLHKIPGNVSA-KPIPIAIPHPLRQRGDCDMCLIVKDN---AKAWIKEMVENEPVEGLTKVIKLDKLRTQYKDFKDRRQLLSQFDLFLADDRILPMLTKALGKTFLKAKKQPVPIKLERRSSLAQQIARARDSAFLVASYGDCWAVKLANTGMAEEQVVENLVAGIAAVVEKLPRKWKNVKAINIKSSSSVALPVYSNIGDLP 863
            +D + VR+A +ALLK   S    K SL+EED E++   I+L K+P      KPI I IPHP+    + ++CL VKD+        K  V  E V G++KV+ L KLRT+Y+  + +RQL + +D+F AD+RILP L K LGK F K KKQPVP++L  +   A QI RA ++ +L  S G+  A+K+A +  +E+Q VEN +A IAA VEK+PRKW  V+A+ +K++ SVALP+Y  + D P
Sbjct:    7 IDVEIVRKAVKALLKF--SRGEDKNSLLEED-ELLYLVIALKKVPQKPRHDKPIRIPIPHPIYVAENAEVCLFVKDHKGEGHKAAKSKVREERVAGISKVVGLSKLRTKYESHEAKRQLCNSYDMFAADERILPSLPKLLGKAFFKKKKQPVPVRLTGKD-WAGQIRRACEATYLFWSGGNSLAIKVARSSQSEQQGVENTLAAIAAAVEKVPRKWDGVQAVFLKTADSVALPMYQVLPDAP 244          
BLAST of mRNA_S-firma_F_contig10083.159.1 vs. uniprot
Match: F0WX21_9STRA (Uncharacterized protein AlNc14C340G10778 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WX21_9STRA)

HSP 1 Score: 180 bits (456), Expect = 1.420e-47
Identity = 96/233 (41.20%), Postives = 149/233 (63.95%), Query Frame = 3
Query:  150 LDEDQVRRAARALLKHVKSSAV--GKPSLIEEDGEVVLAQISLHKIPGNVSAKPIPIAIPHPLRQRGDCDMCLIVKDNAKAWIKEMVENEPVEGLTKVIKLDKLRTQYKDFKDRRQLLSQFDLFLADDRILPMLTKALGKTFLKAKKQPVPIKLERRSSLAQQIARARDSAFLVASYGDCWAVKLANTGMAEEQVVENLVAGIAAVVEKLPRKWKNVKAINIKSSSSVALPVY 842
            +DE QVR+A  AL  + +   +   K  LIEE+  +    I   K+P   S KPIPI +PH +R++ +  MCL+VKD  K  +K++++ +PVEGLTKV+ L KLR  +  F+DRR L+  +DLFLADDRILP L   +GK F++ KKQPVP+++ R +   Q +       F+  S G C  V++A+ GM+ +++VEN++ G+      + +KW  ++AI++K++ SVALP+Y
Sbjct:    9 MDEAQVRKAVLALQIYTEKQKLEQNKQPLIEENVSLSCI-IQRKKVPSKASLKPIPIELPHGIRKQSE--MCLLVKDTDKDRVKKILKEDPVEGLTKVMTLKKLRKNFARFEDRRTLVGAYDLFLADDRILPYLKSPVGKVFIRVKKQPVPVRISR-AKFTQNLRAVEKQTFMFVSCGACMNVRIAHLGMSVDEIVENIMIGMQRCASLIGKKWNGIQAIHLKTNESVALPIY 237          
BLAST of mRNA_S-firma_F_contig10083.159.1 vs. uniprot
Match: A0A6A4D992_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4D992_9STRA)

HSP 1 Score: 180 bits (456), Expect = 1.720e-46
Identity = 108/253 (42.69%), Postives = 150/253 (59.29%), Query Frame = 3
Query:  150 LDEDQVRRAARALLKHV--KSSAVGKPSLIEEDGEVVLAQISLHKIPGNVSAKPIPIAIPHPLRQRGDCDMCLIVKDNAKAWIKEMVENEPVEGLTKVIKLDKLRTQYKDFKDRRQLLSQFDLFLADDRILPMLTKALGKTFLKAKKQPVPIKLERRSSLAQQIARARDSAFLVASYGDCWAVKLANTGMAEEQVVENLVAGIAAVVEKLPRKWKNVKAINIKSSSSVALPVYSNIGDLPPAPPAGKAEATKE 902
            LDE QVRRA  AL   V  KS    K  L+E D E V   ++   +PG  S KPIP+ +PHPL    + ++CL VKD  K  IKE +  +PV G+TKV+ + KLR  +  F+D+R L + +D+FLADDR+LP L   LG  F   KKQPV +++ R+S  A     +R +AF V S G C  VK+A   M  EQ+V+N++  + +    +P+ W  V++I IK+S SVALPVY+ +  L   PP GK    K+
Sbjct:   14 LDEAQVRRAVLALQTFVAKKSEERSKAPLVE-DAEFVSCILTRKLVPGKTSLKPIPVNLPHPLHDE-NAEICLFVKDEDKKRIKEALAKDPVAGITKVMTVKKLRKNFSRFEDKRALAAAYDMFLADDRVLPYLKGHLGTKFFAKKKQPVAVRVSRKSVAASLRLASRRTAFHV-SAGVCNNVKVARLDMTPEQIVDNIMVAMNSCANLVPKGWNGVQSIGIKTSDSVALPVYNALATLAKLPPVGKTANLKK 263          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10083.159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5C3_ECTSI1.270e-14777.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2CVK6_9STRA4.390e-6246.09Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2SVD8_9STRA8.490e-5652.84Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6G0XX31_9STRA7.610e-5243.64Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
W7TFQ3_9STRA2.630e-4942.91Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S1UKI9_9STRA3.660e-4942.02Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A024G4U6_9STRA1.850e-4841.63Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
E1ZQX0_CHLVA1.240e-4745.04Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
F0WX21_9STRA1.420e-4741.20Uncharacterized protein AlNc14C340G10778 n=1 Tax=A... [more]
A0A6A4D992_9STRA1.720e-4642.69Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10083contigS-firma_F_contig10083:1288..4609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7G5C3
Preferred nameRSL1D1
PFAMsRibosomal_L1
Max annot lvl2759|Eukaryota
KEGG koko:K11824,ko:K14775
KEGG Pathwayko04144,ko04721,ko04961,ko05016,map04144,map04721,map04961,map05016
GOsGO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010941,GO:0015934,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032879,GO:0032880,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0042981,GO:0043043,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0048027,GO:0048583,GO:0050789,GO:0050793,GO:0050794,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0090304,GO:0090342,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000772
Evalue8.85e-153
EggNOG OGsKOG1685@1|root,KOG1685@2759|Eukaryota
Descriptionregulation of cellular senescence
COG categoryS
BRITEko00000,ko00001,ko03009,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L1-like
Ec32 orthologEc-14_006980.1
Exons2
Model size2180
Cds size1275
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10083.159.1prot_S-firma_F_contig10083.159.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10083 2053..4469 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815533.7789347-UTR-S-firma_F_contig10083:1287..20521622815533.7789347-UTR-S-firma_F_contig10083:1287..2052Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10083 1288..2052 -
1696949395.497755-UTR-S-firma_F_contig10083:1287..20521696949395.497755-UTR-S-firma_F_contig10083:1287..2052Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10083 1288..2052 -
1622815533.8580341-UTR-S-firma_F_contig10083:4469..46091622815533.8580341-UTR-S-firma_F_contig10083:4469..4609Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10083 4470..4609 -
1696949395.580073-UTR-S-firma_F_contig10083:4469..46091696949395.580073-UTR-S-firma_F_contig10083:4469..4609Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10083 4470..4609 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815533.8266437-CDS-S-firma_F_contig10083:2052..30331622815533.8266437-CDS-S-firma_F_contig10083:2052..3033Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10083 2053..3033 -
1696949395.5429664-CDS-S-firma_F_contig10083:2052..30331696949395.5429664-CDS-S-firma_F_contig10083:2052..3033Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10083 2053..3033 -
1622815533.8433251-CDS-S-firma_F_contig10083:4175..44691622815533.8433251-CDS-S-firma_F_contig10083:4175..4469Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10083 4176..4469 -
1696949395.5548759-CDS-S-firma_F_contig10083:4175..44691696949395.5548759-CDS-S-firma_F_contig10083:4175..4469Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10083 4176..4469 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10083.159.1

>prot_S-firma_F_contig10083.159.1 ID=prot_S-firma_F_contig10083.159.1|Name=mRNA_S-firma_F_contig10083.159.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=425bp
MVSLDEDQVRRAARALLKHVKSSAVGKPSLIEEDGEVVLAQISLHKIPGN
VSAKPIPIAIPHPLRQRGDCDMCLIVKDNAKAWIKEMVENEPVEGLTKVI
KLDKLRTQYKDFKDRRQLLSQFDLFLADDRILPMLTKALGKTFLKAKKQP
VPIKLERRSSLAQQIARARDSAFLVASYGDCWAVKLANTGMAEEQVVENL
VAGIAAVVEKLPRKWKNVKAINIKSSSSVALPVYSNIGDLPPAPPAGKAE
ATKEEEEEEGKKQDGAGGGGGEESGAEQRKKKQRKPRPLIRQQLNKLKQE
ARAEKAAARSAAAKSAEGSKAQKSVGGVKRKKRAVSENENEEPNKSTDTD
TGTGNATVTAGGDEAEDSGPGAAGGKRVRRKRKAKSPKAKVKAKVEAKAK
EADGSASASGSAVKAAKRRRTAAA*
back to top

mRNA from alignment at S-firma_F_contig10083:1288..4609-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10083.159.1 ID=mRNA_S-firma_F_contig10083.159.1|Name=mRNA_S-firma_F_contig10083.159.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3322bp|location=Sequence derived from alignment at S-firma_F_contig10083:1288..4609- (Sphaerotrichia firma ET2_F female)
CGACGCTGTGATTGAATGCCATATGTCGTATATATGTCGCCATGATTCCA GTCCGTCCCCCAATCTCTTGAGTCGGGGGGTGTGTGGCTCTCTGCCACCT CCCTCTCACCTCGCATCCTCTTCACACCAACTCTACCACGATGGTCAGCC TCGACGAAGACCAAGTACGCCGCGCGGCTAGGGCCTTGCTGAAGCACGTG AAAAGCTCAGCGGTGGGGAAGCCGAGCTTGATTGAGGAGGACGGAGAGGT GGTGCTGGCACAAATTTCTCTCCACAAGATCCCAGGCAACGTTTCCGCGA AGCCGATACCGATCGCCATCCCCCACCCCCTTCGGCAACGAGGGGACTGC GATATGTGCCTCATCGTGAAGGACAACGCTAAGGCGTGGATAAAGGAGAT GGTGGAGAATGAGCCGGTGGAAGGCCTCACCAAGGTAAGCCTTGCCTCTA GGAGGTTGGACGGGACTGTCATCCTCGTTCCTTTGGTTCTCCCTGCGCGA GTGGGGGGGGTGGGCATGCTCTCAGCACGAAAGTCCTTGGTACCGCGATC GTTGGATATCAATACACATACCTTTTTTATGTAGAGGGTGGTCGACAACA CCGTGCTGAATGCTTCTTCTAGCGCCGTGTGTAGTTGAACCCTTGGTTCT ATAATGCTGCTGTGTCTCCACCCTCGACACTCCACACTCCACACACACCA CCCACGCGCTCGCGGTTTCGACCTCGATTGGAGGTTTCTCCACGTTCATG CGTCGTGCCCCTGCCGTCTCTCGTCTCTCGATTCCCACGTGTTATACGCT ACACATCCTGTAGCAAAACCATGTTGCCGAAGAAACGGCGGTGCTGGCGG ACAGCAGTATATTCAATCGCGTCTTTTGATACAAGGTTGAGGTTATCATG CAAGCGCGTCACAGAATTCGGTGTTTGGGTATAATATGTACCTATCTACA ATGCGACCATCGTTCAGCTTTGCTGCCAGCTTTCTGTGCCAATCTTATCT CTCCTTTAACATCTACAATAGTTACCGATAGGTCCGGGCGGAGATTAGTC GAACGCAGGGATGGGTGCCTTGGGTCTTTTGTCTTTTCTTTTCTCTTCAC CTCAGACCACACCCTACCGTATTTACCATCTTACCGCCGTCACTTGACGG GGCTGTCTCCTCTTGGCTCTTTGCAGTAAACTGCAACATATCGGCCGTTG CAACAAGCACGGATTCATAAGCATACAATAGGCACTCCGAGCTTTCCCCG CCAGCAACCCTTTTTCTTTTTCGCCATCGAGCATCGAGCATCCAGCATCC AGCTTCCAACCCTTGCCCTCTGTGGTCGCGGACCTCCCGCTACGTTGCAG TTACAGTTTGCTCCATTTTTACATTTTTACCTGCCAGAAGCGACGACAGC AGCAGTTGCAGCATTACTAGTAGTGTTCGCCACCCTCGCCCCGCCCCGCC TCGCCGACGCCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTG CCTTGCCTTGCCTTGCCTTGCCTTGCTGTCGTTTCGTCGGAACGCGCCCC CGTCATGGCATGCATGGCGAACGCAGGTGATCAAGCTCGACAAGCTCCGC ACGCAGTACAAGGACTTCAAGGACCGGCGGCAGCTGCTGTCGCAGTTCGA CCTCTTCCTGGCGGACGACCGCATCCTGCCCATGCTCACCAAGGCCCTCG GCAAGACCTTCCTTAAGGCCAAGAAGCAGCCCGTGCCGATAAAGCTCGAG CGCAGGTCGTCCCTCGCCCAGCAGATCGCCCGCGCGAGAGACAGCGCCTT CCTGGTGGCTTCCTACGGGGACTGCTGGGCCGTCAAGCTGGCCAACACGG GCATGGCGGAGGAGCAGGTGGTGGAGAACCTCGTGGCCGGCATCGCGGCG GTGGTGGAGAAGCTCCCGCGGAAGTGGAAGAACGTCAAGGCCATCAACAT CAAGAGCTCCAGCTCGGTGGCGCTGCCGGTGTACAGCAACATCGGAGACC TTCCTCCCGCACCTCCCGCGGGCAAGGCCGAGGCGACGAAGGAGGAGGAG GAGGAGGAGGGGAAGAAGCAGGACGGGGCGGGCGGGGGCGGGGGCGAGGA GTCCGGCGCCGAACAACGAAAGAAGAAGCAGCGCAAGCCCCGGCCGCTCA TCCGGCAGCAGCTCAACAAGCTCAAGCAGGAAGCCAGGGCCGAGAAGGCG GCGGCTAGGTCGGCGGCGGCTAAGTCGGCGGAAGGGAGCAAAGCGCAAAA GTCAGTCGGCGGGGTGAAGAGGAAGAAGCGGGCAGTTTCGGAGAACGAGA ACGAGGAGCCCAACAAGAGCACGGACACAGACACCGGCACCGGCAACGCC ACCGTCACGGCGGGCGGAGACGAGGCCGAGGACAGCGGGCCGGGGGCGGC GGGAGGGAAGAGGGTCAGGCGAAAGCGAAAGGCCAAGTCGCCCAAGGCGA AGGTGAAGGCGAAGGTGGAGGCGAAGGCGAAGGAGGCTGACGGCAGTGCA AGTGCGAGTGGGAGTGCCGTAAAGGCGGCCAAGCGGCGACGGACGGCTGC CGCGTGATTGCCGCATTCTTTGTCTCGTGGCGTCTGTTTAAGTTGTTAAT CTAGCCTTGGATGATGACATGATGGCAGCAGTGGCGCTTTGGTCTTGTGC AGGGGCTAGGCAAGGGCTAGGCCAGCAGCAGACAAACGTCCGGCTTGTTG TAGTATTCAGGCAGTATACTGCTGTAGGCGCTTTCGTCGGAAGCAAACAT TTTGGGAGCAGTGCTCGGGTGTTGTTTGGGCCTCTCTTCACTGTGTCTTC CCCCGACTGTCTTAGGGCTCCCCTCCCCTCCTTGCGCTGCCTTCCCTTGT GTTGTGTTTGGTGCGTGCGCGGTGTGGTCGTTGCTTGGGTGACAGAGAGA CAGACAAGACAGCGGAGAGAAAGAGGGGTAGACTAATCTGTCGTTTCATT GAAACGCCGCGTGTTCTTGCCCCGGCGCGGCTCGGAAGTGAAGTGTTGAA GTGTACAGTACAGTAGGGTTATTGCTTGTTGGGCGGGGGCGGACCCCCCT TGCGCGGTACGCACATGCGGGAGGGAGGGAGGGGTGGTGCGTTTCGTCCT TGTTTTTGCCTTTCGAAGCACCAATGAGGAGCAGAGGCTGACGTGGGCTT GAACAAGAGTAGTACACCCGTTCGTTCGCTGTAAACTTGACGATTTTCTT TTTTGGAGTTGTTCTGCAAGCGTCAGCCGTATGCATATGCGCGTCCGACC TGGTGCGCCCTTTTCATCGTGCCTCATTTGGAAGCCGCCTGCTTTGTGTG GATCCCCACGTTTTGCCAAGCA
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10083:1288..4609-

>mRNA_S-firma_F_contig10083.159.1 ID=mRNA_S-firma_F_contig10083.159.1|Name=mRNA_S-firma_F_contig10083.159.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2550bp|location=Sequence derived from alignment at S-firma_F_contig10083:1288..4609- (Sphaerotrichia firma ET2_F female)
ATGGTCAGCCTCGACGAAGACCAAGTACGCCGCGCGGCTAGGGCCTTGCT
GAAGCACGTGAAAAGCTCAGCGGTGGGGAAGCCGAGCTTGATTGAGGAGG
ACGGAGAGGTGGTGCTGGCACAAATTTCTCTCCACAAGATCCCAGGCAAC
GTTTCCGCGAAGCCGATACCGATCGCCATCCCCCACCCCCTTCGGCAACG
AGGGGACTGCGATATGTGCCTCATCGTGAAGGACAACGCTAAGGCGTGGA
TAAAGGAGATGGTGGAGAATGAGCCGGTGGAAGGCCTCACCAAGATGGTC
AGCCTCGACGAAGACCAAGTACGCCGCGCGGCTAGGGCCTTGCTGAAGCA
CGTGAAAAGCTCAGCGGTGGGGAAGCCGAGCTTGATTGAGGAGGACGGAG
AGGTGGTGCTGGCACAAATTTCTCTCCACAAGATCCCAGGCAACGTTTCC
GCGAAGCCGATACCGATCGCCATCCCCCACCCCCTTCGGCAACGAGGGGA
CTGCGATATGTGCCTCATCGTGAAGGACAACGCTAAGGCGTGGATAAAGG
AGATGGTGGAGAATGAGCCGGTGGAAGGCCTCACCAAGGTGATCAAGCTC
GACAAGCTCCGCACGCAGTACAAGGACTTCAAGGACCGGCGGCAGCTGCT
GTCGCAGTTCGACCTCTTCCTGGCGGACGACCGCATCCTGCCCATGCTCA
CCAAGGCCCTCGGCAAGACCTTCCTTAAGGCCAAGAAGCAGCCCGTGCCG
ATAAAGCTCGAGCGCAGGTCGTCCCTCGCCCAGCAGATCGCCCGCGCGAG
AGACAGCGCCTTCCTGGTGGCTTCCTACGGGGACTGCTGGGCCGTCAAGC
TGGCCAACACGGGCATGGCGGAGGAGCAGGTGGTGGAGAACCTCGTGGCC
GGCATCGCGGCGGTGGTGGAGAAGCTCCCGCGGAAGTGGAAGAACGTCAA
GGCCATCAACATCAAGAGCTCCAGCTCGGTGGCGCTGCCGGTGTACAGCA
ACATCGGAGACCTTCCTCCCGCACCTCCCGCGGGCAAGGCCGAGGCGACG
AAGGAGGAGGAGGAGGAGGAGGGGAAGAAGCAGGACGGGGCGGGCGGGGG
CGGGGGCGAGGAGTCCGGCGCCGAACAACGAAAGAAGAAGCAGCGCAAGC
CCCGGCCGCTCATCCGGCAGCAGCTCAACAAGCTCAAGCAGGAAGCCAGG
GCCGAGAAGGCGGCGGCTAGGTCGGCGGCGGCTAAGTCGGCGGAAGGGAG
CAAAGCGCAAAAGTCAGTCGGCGGGGTGAAGAGGAAGAAGCGGGCAGTTT
CGGAGAACGAGAACGAGGAGCCCAACAAGAGCACGGACACAGACACCGGC
ACCGGCAACGCCACCGTCACGGCGGGCGGAGACGAGGCCGAGGACAGCGG
GCCGGGGGCGGCGGGAGGGAAGAGGGTCAGGCGAAAGCGAAAGGCCAAGT
CGCCCAAGGCGAAGGTGAAGGCGAAGGTGGAGGCGAAGGCGAAGGAGGCT
GACGGCAGTGCAAGTGCGAGTGGGAGTGCCGTAAAGGCGGCCAAGCGGCG
ACGGACGGCTGCCGCGTGAGTGATCAAGCTCGACAAGCTCCGCACGCAGT
ACAAGGACTTCAAGGACCGGCGGCAGCTGCTGTCGCAGTTCGACCTCTTC
CTGGCGGACGACCGCATCCTGCCCATGCTCACCAAGGCCCTCGGCAAGAC
CTTCCTTAAGGCCAAGAAGCAGCCCGTGCCGATAAAGCTCGAGCGCAGGT
CGTCCCTCGCCCAGCAGATCGCCCGCGCGAGAGACAGCGCCTTCCTGGTG
GCTTCCTACGGGGACTGCTGGGCCGTCAAGCTGGCCAACACGGGCATGGC
GGAGGAGCAGGTGGTGGAGAACCTCGTGGCCGGCATCGCGGCGGTGGTGG
AGAAGCTCCCGCGGAAGTGGAAGAACGTCAAGGCCATCAACATCAAGAGC
TCCAGCTCGGTGGCGCTGCCGGTGTACAGCAACATCGGAGACCTTCCTCC
CGCACCTCCCGCGGGCAAGGCCGAGGCGACGAAGGAGGAGGAGGAGGAGG
AGGGGAAGAAGCAGGACGGGGCGGGCGGGGGCGGGGGCGAGGAGTCCGGC
GCCGAACAACGAAAGAAGAAGCAGCGCAAGCCCCGGCCGCTCATCCGGCA
GCAGCTCAACAAGCTCAAGCAGGAAGCCAGGGCCGAGAAGGCGGCGGCTA
GGTCGGCGGCGGCTAAGTCGGCGGAAGGGAGCAAAGCGCAAAAGTCAGTC
GGCGGGGTGAAGAGGAAGAAGCGGGCAGTTTCGGAGAACGAGAACGAGGA
GCCCAACAAGAGCACGGACACAGACACCGGCACCGGCAACGCCACCGTCA
CGGCGGGCGGAGACGAGGCCGAGGACAGCGGGCCGGGGGCGGCGGGAGGG
AAGAGGGTCAGGCGAAAGCGAAAGGCCAAGTCGCCCAAGGCGAAGGTGAA
GGCGAAGGTGGAGGCGAAGGCGAAGGAGGCTGACGGCAGTGCAAGTGCGA
GTGGGAGTGCCGTAAAGGCGGCCAAGCGGCGACGGACGGCTGCCGCGTGA
back to top