mRNA_S-firma_F_contig10083.159.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10083.159.1 vs. uniprot
Match: D7G5C3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5C3_ECTSI) HSP 1 Score: 444 bits (1141), Expect = 1.270e-147 Identity = 240/309 (77.67%), Postives = 257/309 (83.17%), Query Frame = 3
Query: 141 MVSLDEDQVRRAARALLKHVKSSAVGKPSLIEEDGEVVLAQISLHKIPGNVSAKPIPIAIPHPLRQRGDCDMCLIVKDNAKAWIKEMVENEPVEGLTKVIKLDKLRTQYKDFKDRRQLLSQFDLFLADDRILPMLTKALGKTFLKAKKQPVPIKLERRSSLAQQIARARDSAFLVASYGDCWAVKLANTGMAEEQVVENLVAGIAAVVEKLPRKWKNVKAINIKSSSSVALPVYSNIGDLPPAPPAGKAE-ATKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKPRPLIRQQLNKLKQEARAEKAAA 1064
MVS DE QVRRAARALLKHV SSA GK SLIE++GEVVLAQISLHKIPG+V AKP+PIAIPHPLR+R DCDMCLIVKDNAK WIKEM E EPVEGLTK+IKLDKLRTQYKDFKDRR+LLSQFDLFLADDRILPMLTKALGKTFLK KKQPVPIKLERR+S A+QIARARDSAFLV S+GDCWAVKLANT M E+QVVENL+ G+AAVVEK+PRKWKNVKAINIK S SVALPVYSNIGDLPPAP A KA A KE RKPRPLIRQQLNKLK+EA+AEKAA+
Sbjct: 1 MVSFDEAQVRRAARALLKHVNSSAAGKQSLIEDEGEVVLAQISLHKIPGDVKAKPVPIAIPHPLRKREDCDMCLIVKDNAKVWIKEMAEKEPVEGLTKIIKLDKLRTQYKDFKDRRELLSQFDLFLADDRILPMLTKALGKTFLKVKKQPVPIKLERRASFAKQIARARDSAFLVGSHGDCWAVKLANTSMTEDQVVENLMTGVAAVVEKIPRKWKNVKAINIKCSHSVALPVYSNIGDLPPAPSAKKATVAGKEEAAGEGEGKEPNSHSQAKK----------RKPRPLIRQQLNKLKEEAKAEKAAS 299
BLAST of mRNA_S-firma_F_contig10083.159.1 vs. uniprot
Match: A0A7S2CVK6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CVK6_9STRA) HSP 1 Score: 221 bits (563), Expect = 4.390e-62 Identity = 112/243 (46.09%), Postives = 161/243 (66.26%), Query Frame = 3
Query: 126 TNSTTMVSLDEDQVRRAARALLKHVKSSAVGKPSLIEEDGEVVLAQISLHKIPGNVSAKPIPIAIPHPLRQRGDCDMCLIVKDNAKAWIKEMV-ENEPVEGLTKVIKLDKLRTQYKDFKDRRQLLSQFDLFLADDRILPMLTKALGKTFLKAKKQPVPIKLERRSSLAQQIARARDSAFLVASYGDCWAVKLANTGMAEEQVVENLVAGIAAVVEKLPRKWKNVKAINIKSSSSVALPVYSNI 851
T +T +L+ + A +ALL K A + L D E +L QI+L +IPGN S KPI +++PHP+ DC MCL +K K +K ++ E+ PVEGL K+I LDKLRT Y F RR+LL+ +DLFLAD+RILPML KALGKTF KKQP+P+ + R SL ++ RARDS L+ G C AV + NT M +++V N+VA ++ +E +PRKWKN++AI +K++ S++LP+++ +
Sbjct: 50 TQTTKRDNLNTHTITCAVKALLAFHKKKAESERKLPGADDERILIQITLQRIPGNSSPKPIQLSVPHPIHGDSDCQMCLFIKKEDKPLVKSLLMEDNPVEGLAKIITLDKLRTSYARFSQRRELLASYDLFLADERILPMLCKALGKTFFSRKKQPIPLCVTRHESLPHRVRRARDSTSLIIPSGTCVAVIVGNTNMTPKELVANIVAAASSAIEHIPRKWKNIQAIQVKTADSMSLPIFNKL 292
BLAST of mRNA_S-firma_F_contig10083.159.1 vs. uniprot
Match: A0A7S2SVD8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVD8_9STRA) HSP 1 Score: 202 bits (515), Expect = 8.490e-56 Identity = 121/229 (52.84%), Postives = 152/229 (66.38%), Query Frame = 3
Query: 171 RAARALLK-HVKSSAVGKPSLIEEDGEVVLAQISLHKIPGNVSAKPIPIAIPHPLRQRGDCDMCLIVKDNAKAWIKEMV-ENEPVEGLTKVIKLDKLRTQYKDFKDRRQLLSQFDLFLADDRILPMLTKALGKTFLKAKKQPVPIKLERRSSLAQQIARARDSAFLVASYGDCWAVKLANTGMAEEQVVENLVAGIAAVVEKLPRKWKNVKAINIKSSSSVALPVYSNI 851
+A ALL H K+ A G L E E V I L K+P S KPI + + HPL DCDMCL +K K W+KE++ E++PV GL KVI LDKLRT Y F+ RR+L+S +DLFLADDRILPML K LGKTF KKQPVP+++ RR +L Q I RARDS +LV G+ +V + NT M +Q+VENL+A V+ +PRKW NV+AI IKS SSVALPV + +
Sbjct: 1 KAFDALLSYHEKAHAAGGDLLGSE--ERVHVTIVLKKVPSKASPKPIRLPLAHPLWSL-DCDMCLFMKTEDKPWVKELLMESKPVPGLKKVITLDKLRTSYARFERRRELISTYDLFLADDRILPMLCKTLGKTFFSRKKQPVPVRI-RRGALPQTIQRARDSTYLVLGGGNNVSVCIGNTSMTRKQLVENLLAATNEAVDHIPRKWANVQAIYIKSDSSVALPVLNKL 225
BLAST of mRNA_S-firma_F_contig10083.159.1 vs. uniprot
Match: A0A6G0XX31_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XX31_9STRA) HSP 1 Score: 196 bits (499), Expect = 7.610e-52 Identity = 103/236 (43.64%), Postives = 158/236 (66.95%), Query Frame = 3
Query: 150 LDEDQVRRAARALLKHV--KSSAVGKPSLIEEDGEVVLAQISLHKIPGNVSAKPIPIAIPHPLRQRGDCDMCLIVKDNAKAWIKEMVENEPVEGLTKVIKLDKLRTQYKDFKDRRQLLSQFDLFLADDRILPMLTKALGKTFLKAKKQPVPIKLERRSSLAQQIARARDSAFLVASYGDCWAVKLANTGMAEEQVVENLVAGIAAVVEKLPRKWKNVKAINIKSSSSVALPVYSNI 851
LD +QVR+A AL + + K S K +L+E D +V+ + + +P S KP+PIA+P+ +R GD ++CL VKD+ K IK ++N+P+ GLTKV+ + KL+ + FKD+R+L + +DLFLADDRILP L LGKTF AKKQP + + + +++ I R + S G C+ VK+A+ GM E+++EN++ G +VE +P+KWKN+K+INIK+S SVALP+Y+++
Sbjct: 5 LDAEQVRKAVVALKQFIQKKKSQNSKQALVE-DNQVIQIIFTRNTVPAKESLKPVPIALPNNIR--GDGEVCLFVKDSDKDRIKAHLKNDPIPGLTKVMPVKKLKKNFSQFKDKRELKAAYDLFLADDRILPYLKSLLGKTFFDAKKQPTTVNVTGKKNISDHIRRVLAGTEMFVSPGPCFNVKIAHDGMDTEKIIENIIEGTKNIVEHVPKKWKNIKSINIKTSDSVALPIYNSL 237
BLAST of mRNA_S-firma_F_contig10083.159.1 vs. uniprot
Match: W7TFQ3_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFQ3_9STRA) HSP 1 Score: 191 bits (484), Expect = 2.630e-49 Identity = 109/254 (42.91%), Postives = 156/254 (61.42%), Query Frame = 3
Query: 150 LDEDQVRRAARALLKH-------VKSSAVGKPSLIEEDGEVVLAQISLHKIPGNVSAKPIPIAIPHPLRQRGDCD-----MCLIVKDNAKAWIKEMVENEPVEGLTKVIKLDKLRTQYKDFKDRRQLLSQFDLFLADDRILPMLTKALGKTFLKAKKQPVPIKL--------ERRSSLAQQIARARDSAFLVASYGDCWAVKLANTGMAEEQVVENLVAGIAAVVEKLPRKWKNVKAINIKSSSSVALPVYSNI 851
+D Q RA ALL+H V S + L E G+ +L QI+L KIP VS KP+P+++PHPL G D +CLIVK++ K ++ + ++G+ +V+ L +LRT YK+F++RRQL FDLFL DDRILP+L KALGKTF KK PV +KL + +++ ++I A+ L ++G+C +VK+A T + V N++AGI A VE P KWKNV AI++K+SSSVALP+Y +
Sbjct: 54 VDATQATRAVEALLQHNARHQALVASKKSKQDLLASEAGDYILIQIALAKIPERVSPKPVPLSLPHPLHGSGGDDDEDHAVCLIVKESDKGKVQRALNAMKMDGVREVVGLQELRTDYKEFQERRQLRDAFDLFLVDDRILPLLGKALGKTFFSKKKHPVALKLGGLLSSNPQAMATVGKRIIAAQQRTHLYRNHGNCLSVKVAKTSFRPAEAVANVLAGIEAAVEATPGKWKNVMAISVKTSSSVALPLYQRL 307
BLAST of mRNA_S-firma_F_contig10083.159.1 vs. uniprot
Match: A0A7S1UKI9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKI9_9STRA) HSP 1 Score: 184 bits (468), Expect = 3.660e-49 Identity = 100/238 (42.02%), Postives = 157/238 (65.97%), Query Frame = 3
Query: 150 LDEDQVRRAARALLKHVKSSAVGKP--SLIEEDGEVVLAQISLHKIPGNVSAKPIPIAIPHPLRQRGDCD--MCLIVKDNAKAWIKEMVENEPVEGLTKVIKLDKLRTQYKDFKDRRQLLSQFDLFLADDRILPMLTKALGKTFLKAKKQPVPIKLERRSS-LAQQIARARDSAFLVASYGDCWAVKLANTGMAEEQVVENLVAGIAAVVEKLPRKWKNVKAINIKSSSSVALPVYSN 848
LD V RA ALL+H+ + +L++ + E VL Q +L +P S KPI +A+PHP G+ +CLI K + +KE+ P + KV+ L LRT+YK ++ RR+L+++F+LF+ADDRILPML KALGK F KAKK P+PIK+ ++ + +A+ +A ARDS +L G C A+++ +TGM + + EN+ A + A V ++P+KW+N+ +I++K+++SVALPVY++
Sbjct: 6 LDGPLVARATAALLRHLHEEQAKQRGRALLDPEPETVLLQFALKTVPAIASQKPIRLAVPHPFLGFGEGPPRICLICKQESVNAMKELFRAHPDLHVDKVVGLSALRTEYKRYEKRRELMAEFNLFVADDRILPMLAKALGKIFFKAKKHPLPIKINQKGAKVARDVAAARDSTYLHLVQGPCLALRVGHTGMEADAITENIRAVVPAAVSRIPKKWRNILSIHLKTATSVALPVYAS 243
BLAST of mRNA_S-firma_F_contig10083.159.1 vs. uniprot
Match: A0A024G4U6_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G4U6_9STRA) HSP 1 Score: 182 bits (461), Expect = 1.850e-48 Identity = 97/233 (41.63%), Postives = 151/233 (64.81%), Query Frame = 3
Query: 150 LDEDQVRRAARALLKHVKSSAVG--KPSLIEEDGEVVLAQISLHKIPGNVSAKPIPIAIPHPLRQRGDCDMCLIVKDNAKAWIKEMVENEPVEGLTKVIKLDKLRTQYKDFKDRRQLLSQFDLFLADDRILPMLTKALGKTFLKAKKQPVPIKLERRSSLAQQIARARDSAFLVASYGDCWAVKLANTGMAEEQVVENLVAGIAAVVEKLPRKWKNVKAINIKSSSSVALPVY 842
+DE QVR+A AL +++ K LIEE+ + + I KIP S KPIPI +PH +R++ + MCL+VKD K +K++++ +PVEGLTKV+ L KLR + F+DRR L+ +DLFLADDRILP L +GK F++ KKQPVP+++ R ++ Q + F+ S G C +++A+ GM+ +Q+VEN++ G+ + +KW ++AI++K++ SVALP+Y
Sbjct: 9 MDEAQVRKAVIALQIYIEKQKKDRTKQQLIEEN-QSLSCIIQRKKIPSKASLKPIPIELPHAIRKQPE--MCLLVKDTDKERVKKILKEDPVEGLTKVMTLKKLRKNFTRFEDRRTLVGAYDLFLADDRILPYLKSPVGKVFIRVKKQPVPVRISR-ANFTQNLRAVEKQTFMFVSCGACMNIRIAHFGMSVDQIVENIMVGMQRCASLIGKKWNGIQAIHLKTNESVALPIY 237
BLAST of mRNA_S-firma_F_contig10083.159.1 vs. uniprot
Match: E1ZQX0_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZQX0_CHLVA) HSP 1 Score: 178 bits (452), Expect = 1.240e-47 Identity = 109/242 (45.04%), Postives = 155/242 (64.05%), Query Frame = 3
Query: 150 LDEDQVRRAARALLKHVKSSAVGKPSLIEEDGEVVLAQISLHKIPGNVSA-KPIPIAIPHPLRQRGDCDMCLIVKDN---AKAWIKEMVENEPVEGLTKVIKLDKLRTQYKDFKDRRQLLSQFDLFLADDRILPMLTKALGKTFLKAKKQPVPIKLERRSSLAQQIARARDSAFLVASYGDCWAVKLANTGMAEEQVVENLVAGIAAVVEKLPRKWKNVKAINIKSSSSVALPVYSNIGDLP 863
+D + VR+A +ALLK S K SL+EED E++ I+L K+P KPI I IPHP+ + ++CL VKD+ K V E V G++KV+ L KLRT+Y+ + +RQL + +D+F AD+RILP L K LGK F K KKQPVP++L + A QI RA ++ +L S G+ A+K+A + +E+Q VEN +A IAA VEK+PRKW V+A+ +K++ SVALP+Y + D P
Sbjct: 7 IDVEIVRKAVKALLKF--SRGEDKNSLLEED-ELLYLVIALKKVPQKPRHDKPIRIPIPHPIYVAENAEVCLFVKDHKGEGHKAAKSKVREERVAGISKVVGLSKLRTKYESHEAKRQLCNSYDMFAADERILPSLPKLLGKAFFKKKKQPVPVRLTGKD-WAGQIRRACEATYLFWSGGNSLAIKVARSSQSEQQGVENTLAAIAAAVEKVPRKWDGVQAVFLKTADSVALPMYQVLPDAP 244
BLAST of mRNA_S-firma_F_contig10083.159.1 vs. uniprot
Match: F0WX21_9STRA (Uncharacterized protein AlNc14C340G10778 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WX21_9STRA) HSP 1 Score: 180 bits (456), Expect = 1.420e-47 Identity = 96/233 (41.20%), Postives = 149/233 (63.95%), Query Frame = 3
Query: 150 LDEDQVRRAARALLKHVKSSAV--GKPSLIEEDGEVVLAQISLHKIPGNVSAKPIPIAIPHPLRQRGDCDMCLIVKDNAKAWIKEMVENEPVEGLTKVIKLDKLRTQYKDFKDRRQLLSQFDLFLADDRILPMLTKALGKTFLKAKKQPVPIKLERRSSLAQQIARARDSAFLVASYGDCWAVKLANTGMAEEQVVENLVAGIAAVVEKLPRKWKNVKAINIKSSSSVALPVY 842
+DE QVR+A AL + + + K LIEE+ + I K+P S KPIPI +PH +R++ + MCL+VKD K +K++++ +PVEGLTKV+ L KLR + F+DRR L+ +DLFLADDRILP L +GK F++ KKQPVP+++ R + Q + F+ S G C V++A+ GM+ +++VEN++ G+ + +KW ++AI++K++ SVALP+Y
Sbjct: 9 MDEAQVRKAVLALQIYTEKQKLEQNKQPLIEENVSLSCI-IQRKKVPSKASLKPIPIELPHGIRKQSE--MCLLVKDTDKDRVKKILKEDPVEGLTKVMTLKKLRKNFARFEDRRTLVGAYDLFLADDRILPYLKSPVGKVFIRVKKQPVPVRISR-AKFTQNLRAVEKQTFMFVSCGACMNVRIAHLGMSVDEIVENIMIGMQRCASLIGKKWNGIQAIHLKTNESVALPIY 237
BLAST of mRNA_S-firma_F_contig10083.159.1 vs. uniprot
Match: A0A6A4D992_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4D992_9STRA) HSP 1 Score: 180 bits (456), Expect = 1.720e-46 Identity = 108/253 (42.69%), Postives = 150/253 (59.29%), Query Frame = 3
Query: 150 LDEDQVRRAARALLKHV--KSSAVGKPSLIEEDGEVVLAQISLHKIPGNVSAKPIPIAIPHPLRQRGDCDMCLIVKDNAKAWIKEMVENEPVEGLTKVIKLDKLRTQYKDFKDRRQLLSQFDLFLADDRILPMLTKALGKTFLKAKKQPVPIKLERRSSLAQQIARARDSAFLVASYGDCWAVKLANTGMAEEQVVENLVAGIAAVVEKLPRKWKNVKAINIKSSSSVALPVYSNIGDLPPAPPAGKAEATKE 902
LDE QVRRA AL V KS K L+E D E V ++ +PG S KPIP+ +PHPL + ++CL VKD K IKE + +PV G+TKV+ + KLR + F+D+R L + +D+FLADDR+LP L LG F KKQPV +++ R+S A +R +AF V S G C VK+A M EQ+V+N++ + + +P+ W V++I IK+S SVALPVY+ + L PP GK K+
Sbjct: 14 LDEAQVRRAVLALQTFVAKKSEERSKAPLVE-DAEFVSCILTRKLVPGKTSLKPIPVNLPHPLHDE-NAEICLFVKDEDKKRIKEALAKDPVAGITKVMTVKKLRKNFSRFEDKRALAAAYDMFLADDRVLPYLKGHLGTKFFAKKKQPVAVRVSRKSVAASLRLASRRTAFHV-SAGVCNNVKVARLDMTPEQIVDNIMVAMNSCANLVPKGWNGVQSIGIKTSDSVALPVYNALATLAKLPPVGKTANLKK 263 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10083.159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10083.159.1 >prot_S-firma_F_contig10083.159.1 ID=prot_S-firma_F_contig10083.159.1|Name=mRNA_S-firma_F_contig10083.159.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=425bp MVSLDEDQVRRAARALLKHVKSSAVGKPSLIEEDGEVVLAQISLHKIPGNback to top mRNA from alignment at S-firma_F_contig10083:1288..4609- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10083.159.1 ID=mRNA_S-firma_F_contig10083.159.1|Name=mRNA_S-firma_F_contig10083.159.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3322bp|location=Sequence derived from alignment at S-firma_F_contig10083:1288..4609- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10083:1288..4609- >mRNA_S-firma_F_contig10083.159.1 ID=mRNA_S-firma_F_contig10083.159.1|Name=mRNA_S-firma_F_contig10083.159.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2550bp|location=Sequence derived from alignment at S-firma_F_contig10083:1288..4609- (Sphaerotrichia firma ET2_F female)back to top |