mRNA_S-firma_F_contig10079.151.1 (mRNA) Sphaerotrichia firma ET2_F female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_S-firma_F_contig10079.151.1 vs. uniprot
Match: A0A6H5JPA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA3_9PHAE) HSP 1 Score: 283 bits (724), Expect = 3.250e-90 Identity = 169/313 (53.99%), Postives = 220/313 (70.29%), Query Frame = 1 Query: 1 MAGVVFSVVLSLSCLRSVLVLDAVS-SSNIVSRVTQAVSM-GTDEVARRRRISVASRQQAPTTATGASRIRMLHKRLLAMHFIACIHAIAGIAEYMLPVSDTSCL-THKAVIGTLLLYDASLVLFLLAKTSVTNGNRELAGWETCITWWSRVYAWGYLPLSAFFLALFLPVVANEEGSRCLTGTRQEGERGNFSDTVGFLTNNMMLIVQFVLLLAMFIKPMLLPQSSTQSGGAVYRRVVNRNILCTVCIVFTYTITTIVVVVALLGSSFTVRIEAAEIADATPAINIILTLFLTEIALPLGVSSCFKSVVAST 930 MA ++VVL+L+ R+ LVLDAV S+ V+R+ +AV+ G +V ++ S +Q P +A G SR+R LHKRLLAMHFIA + AG A+YM VS+ SCL T +A++ T+LLYDASLVLFL+ KTSVTNGNR LA WE CITWWSR Y W L A FLA V + EG+ CLT +E E FSDT+GF+ NN +LI+QF LLLAMF+KP+++PQ TQSGGAVYRR+V RN+ CT+ I FTY +TT++VV+ L ++ I+AA++AD P NI +TL LTEI+LPLG SSC K++ A T Sbjct: 1 MATAAYAVVLALTATRTALVLDAVCFRSSPVARIARAVTARGLSQV-----LASTSPRQRPPSA-GGSRVRALHKRLLAMHFIAIANMSAGCAKYMPDVSELSCLATRRAMVATILLYDASLVLFLVGKTSVTNGNRALAIWEACITWWSRFYGWVVLTTGALFLAAQASSVPSLEGTFCLTLDLKEDEDVTFSDTLGFVINNGILIIQFALLLAMFVKPLMIPQGHTQSGGAVYRRLVMRNVACTIAITFTYAVTTVIVVLGFLTTA-PGSIKAAQLADLLPTANIFVTLCLTEISLPLGFSSCVKAIKAET 306
BLAST of mRNA_S-firma_F_contig10079.151.1 vs. uniprot
Match: A0A6H5JPA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA0_9PHAE) HSP 1 Score: 224 bits (572), Expect = 4.080e-68 Identity = 131/236 (55.51%), Postives = 158/236 (66.95%), Query Frame = 1 Query: 205 RMLHKRLLAMHFIACIHAIAGIAEYMLPVSDTSC-LTHKAVIGTLLLYDAS----------LVLFLLAKTSVTNGNRELAGWETCITWWSRVYAWGYLPLSAFFLALFLPVVANEEGSRCLTGTRQEGERGNFSDTVGFLTNNMMLIVQFVLLLAMFIKPMLLPQSSTQSGGAVYRRVVNRNILCTVCIVFTYTITTIVVVVALLGSSFTVRIEAAEIADATPAINIILTLFLTEI 879 R LH+RLLAMH +A ++ AG A+YMLP SDTSC ++H+A I +LL YD S LVLFLLAKTSVTNGNR L WE ITWWSR +AW YLP+S L L P N EG+ C +E E D GF NN++L VQ+VLLLAMFIKPML+ +TQSGGAVYRRVV RNI+CT+ I Y ITT+VVV+ALL S +AA + D P+INI +TL LTE+ Sbjct: 9 RTLHRRLLAMHVVASVNMGAGAAKYMLPPSDTSCRVSHRAWIASLLFYDVSAPQAVADGACLVLFLLAKTSVTNGNRTLTSWENGITWWSRFWAWIYLPVSGTVLGLSFPGEVNSEGTACFNSYGEETETREVGDVAGFAGNNVLLTVQYVLLLAMFIKPMLVSHGNTQSGGAVYRRVVIRNIVCTIGIACAYVITTVVVVLALLSSRPDTD-KAAAVGDIVPSINICVTLCLTEV 243
BLAST of mRNA_S-firma_F_contig10079.151.1 vs. uniprot
Match: D8LN54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN54_ECTSI) HSP 1 Score: 217 bits (553), Expect = 3.860e-66 Identity = 115/187 (61.50%), Postives = 137/187 (73.26%), Query Frame = 1 Query: 205 RMLHKRLLAMHFIACIHAIAGIAEYMLPVSDTSC-LTHKAVIGTLLLYDASLVLFLLAKTSVTNGNRELAGWETCITWWSRVYAWGYLPLSAFFLALFLPVVANEEGSRCLTGTRQEGERGNFSDTVGFLTNNMMLIVQFVLLLAMFIKPMLLPQSSTQSGGAVYRRVVNRNILCTVCIVFTYTITT 762 R LH+RLLAMH IA ++ AG A+YMLP+SDTSC ++H+A I +LL YDA LVLFLLAKT VTNGNR L WE ITWWSR +AW YLP+SA FL L P N EG+ C R+E + D GF +NN++L VQ+VLLLAMFIKPML+ Q +TQSGGAVYRRVV RNI+CT+ I Y ITT Sbjct: 9 RTLHRRLLAMHVIASVNMSAGAAKYMLPLSDTSCRVSHRAWIASLLFYDACLVLFLLAKTGVTNGNRTLTCWEKGITWWSRFWAWIYLPVSATFLGLTFPGEVNSEGTACFNSYREETDTAEVGDVAGFASNNVLLTVQYVLLLAMFIKPMLVSQGNTQSGGAVYRRVVIRNIVCTIGIACAYVITT 195
BLAST of mRNA_S-firma_F_contig10079.151.1 vs. uniprot
Match: A0A6H5K249_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K249_9PHAE) HSP 1 Score: 204 bits (520), Expect = 1.820e-61 Identity = 110/194 (56.70%), Postives = 139/194 (71.65%), Query Frame = 1 Query: 349 ASLVLFLLAKTSVTNGNRELAGWETCITWWSRVYAWGYLPLSAFFLALFLPVVANEEGSRCLTGTRQEGERGNFSDTVGFLTNNMMLIVQFVLLLAMFIKPMLLPQSSTQSGGAVYRRVVNRNILCTVCIVFTYTITTIVVVVALLGSSFTVRIEAAEIADATPAINIILTLFLTEIALPLGVSSCFKSVVAST 930 ASLVLFL+ K SVTNGNR LA WE CITWWSR Y W L AFFLA V + EG+ CLT QE E FSD +GF+ NN +LI+QF LLLA+F+KP+++PQ TQSGGAVYRR+V RN+ CT+ I FTY +TT++VV+ L ++ I+AA++AD P NI +TL LTE++LPLG SSC K++ A T Sbjct: 13 ASLVLFLVGKASVTNGNRALAIWEACITWWSRFYGWVVLTTGAFFLAAQASSVPSLEGTFCLTLDLQEDEDVTFSDALGFVINNGILIIQFALLLAIFVKPLMIPQGHTQSGGAVYRRLVMRNVACTIAITFTYAVTTVIVVLGFLTTA-PGSIKAAQLADLLPTANIFVTLCLTELSLPLGFSSCVKAIKAET 205
BLAST of mRNA_S-firma_F_contig10079.151.1 vs. uniprot
Match: A0A6H5JY97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY97_9PHAE) HSP 1 Score: 196 bits (499), Expect = 3.200e-56 Identity = 114/254 (44.88%), Postives = 163/254 (64.17%), Query Frame = 1 Query: 169 QAPTTATGASRIRMLHKRLLAMHFIACIHAIAGIAEYMLPVSDTSCL-THKAVIGTLLLYDASLVLFLLAKTSVTNGNRELAGWETCITWWSRVYAWGYLPLSAFFLALFLPVVANEEGSR---CLTGTRQEGERGNFSDTV-GFLTNNMMLIVQFVLLLAMFIKPMLLPQSSTQSGGAVYRRVVNRNILCTVCIVFTYTITTIVVVVALLGSSFTVRIEAAEIADATPAINIILTLFLTEIALPLGVSSCFKS 915 +A T + G+ ++R LH LL HF++ I +A + +Y LPV++ +C THK ++ +LLYDASL+ FLLAK VTNG+R+LA WET I W SR YAW YLP+ A + N+E S C+ G + + +D V G+ +N L++QFVLLL +F++P+L+ +QSG A+YR VV +NI CT+ +V Y +TT+VV+ AL+ S A+ AD TP +N +TL LTEIALPLG SSC+K+ Sbjct: 70 RARTHSAGSPQVRFLHITLLVTHFVSVITGVAAVFKYTLPVTEANCTATHKVLVSMILLYDASLLTFLLAKVHVTNGHRKLAWWETVIVWISRGYAWIYLPIVAVVIPYQFRGGTNDEASVKTFCVNGYHMDDDTDEVNDNVLGYGSNMGSLVIQFVLLLILFVRPLLVRLEGSQSGEAMYRMVVIKNITCTIAVVTAYAVTTVVVIAALIRQSNDSN-TASLFADITPLVNQFVTLCLTEIALPLGFSSCWKA 322
BLAST of mRNA_S-firma_F_contig10079.151.1 vs. uniprot
Match: D8LG96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG96_ECTSI) HSP 1 Score: 171 bits (433), Expect = 7.120e-47 Identity = 116/318 (36.48%), Postives = 176/318 (55.35%), Query Frame = 1 Query: 4 AGVVFSVVLSLSCLRSVLVLDAVSS----SNIVSRVTQAVSM-----GTDEVARRRRI---SVASRQQAPTTATGASRIRMLHKRLLAMHFIACIHAIAGIAEYMLPVSDTSCL-THKAVIGTLLLYDASLVLFLLAKTSVTNGNRELAGWETCITWWSRVYAWGYLPLSAFFLALFLPVVANEEGSRCLTGTRQEGERGNFSDTV-GFLTNNMMLIVQFVLLLAMFIKPMLLPQSSTQSGGAVYRRVVNRNILCTVCIVFTYTITTIVVVVALLGSSFTVRIEAAEIADATPAINIILTLFLTEIALPLGVSSCFKS 915 A V+ S+ LSL R++ +DA+ ++V R +A + + RR + S +A T + G+ ++R LH LL H ++ + +A + +Y LPV+ +C THK ++ LLLYDASL+ FLLAK VTNG+R+LA WET I W SR YAW YLP+ A + N+E + C+ G + + + + G+ +N LI+QFVLLL +F++P+L+ +QSG A+YRRVV +NI CT+ +V Y +TT+VV+ ALL + D+ IALPLG +SC+K+ Sbjct: 3 AEVILSITLSLILARTLFAMDAIRDIRGYKSVVCRAAKAAHSLQQPSSSSQGGRRPSLPSNDAVSTPRARTHSAGSPQVRFLHITLLVTHVVSVMAVVAALFKYTLPVTVENCTATHKVLVSMLLLYDASLLTFLLAKVHVTNGHRKLAWWETAIVWISRGYAWIYLPIVAVAIPYQFRGGTNDERTFCINGYNMDDDADEVHENIRGYGSNMGSLIIQFVLLLILFVRPLLVRLEGSQSGEAIYRRVVIKNITCTIAVVTAYAVTTVVVIAALLRQNN----------DSNT------------IALPLGFTSCWKA 298
BLAST of mRNA_S-firma_F_contig10079.151.1 vs. uniprot
Match: D8LG97_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG97_ECTSI) HSP 1 Score: 164 bits (414), Expect = 3.170e-44 Identity = 99/245 (40.41%), Postives = 147/245 (60.00%), Query Frame = 1 Query: 67 AVSSSNIVSRVTQAVSMGTDEVARRRRISVASRQQAPTTATGASRIRMLHKRLLAMHFIACIHAIAGIAEYMLPVSDTSC-LTHKAVIGTLLLYDASLVLFLLAKTSVTNGNRELAGWETCITWWSRVYAWGYLPLSAFFLALFLPVVANEEGSRCLTGTRQEG----ERGNFSDTVGFLTNNMMLIVQFVLLLAMFIKPMLLPQSSTQSGGAVYRRVVNRNILCTVCIVFTYTITTIVVVVALL 786 A +SS ++ + S G R + +A R ++ + + G+ ++R LH LL H +A I + + +Y LPV+ ++C THK +L+DASL+ FLL K VTNG R+L+ WE + W R +AW YLPL++ F++ P NEEG+ C G +++ ER + G+ N ML+VQ+VLLL +F++P+++ QSGGAVYR VV RNI CTV +V +Y ITTIV V+ALL Sbjct: 53 AANSSGLLGSQRSSSSQGRRSAPNRPPV-LAQRGRSASASAGSPKVRFLHIALLLEHIVALIAIASTVLKYALPVTASNCNATHKVSTAFAILFDASLLTFLLFKVDVTNGIRKLSCWEKGVIWICRAFAWIYLPLASIFVSATYPGGTNEEGTFCENGFKRDEDVNYEREASDNAYGYAVTNAMLLVQYVLLLILFVRPLMVRLEGAQSGGAVYRSVVIRNISCTVAVVVSYIITTIVTVIALL 296
BLAST of mRNA_S-firma_F_contig10079.151.1 vs. uniprot
Match: A0A6H5K6Y0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Y0_9PHAE) HSP 1 Score: 146 bits (368), Expect = 2.460e-38 Identity = 78/145 (53.79%), Postives = 95/145 (65.52%), Query Frame = 1 Query: 205 RMLHKRLLAMHFIACIHAIAGIAEYMLPVSDTSC-LTHKAVIGTLLLYDAS------LVLFLLAKTSVTNGNRELAGWETCITWWSRVYAWGYLPLSAFFLALFLPVVANEEGSRCLTGTRQEGERGNFSDTVGFLTNNMMLIVQ 618 R LH+RLLAMH +A ++ AG A+YM P+SD SC ++H+A I +LLLYD S LVLFLLAKTSVTNGNR L WE ITWWSR +AW YLP+SA L L P N EG+ C +E E D GF +NN++L VQ Sbjct: 9 RTLHRRLLAMHVVASVNMSAGAAKYMFPLSDASCRVSHRAWIASLLLYDVSAPQAACLVLFLLAKTSVTNGNRTLTSWEKGITWWSRFWAWIYLPVSATVLGLRFPGEVNSEGTACFNSYGEETETREVGDVAGFASNNVLLTVQ 153
BLAST of mRNA_S-firma_F_contig10079.151.1 vs. uniprot
Match: D8LN45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN45_ECTSI) HSP 1 Score: 143 bits (360), Expect = 6.910e-38 Identity = 80/152 (52.63%), Postives = 109/152 (71.71%), Query Frame = 1 Query: 475 AFFLALFLPVVANEEGSRCLTGTRQEGERGNFSDTVGFLTNNMMLIVQFVLLLAMFIKPMLLPQSSTQSGGAVYRRVVNRNILCTVCIVFTYTITTIVVVVALLGSSFTVRIEAAEIADATPAINIILTLFLTEIALPLGVSSCFKSVVAST 930 AF LA + V + EG+ CL QE E FSDT+GF+ NN +L++QFVLLLAMF+KP+++PQ QSGGAVYRR+V RN+ CT+ I FTY +TT++VV+ L ++ I+AA++AD P NI +TL +TE++LPLG SSC KS+ A T Sbjct: 25 AFILASQVSSVPSPEGNFCLALDLQENEDVTFSDTLGFVFNNGILVIQFVLLLAMFVKPLMIPQGHIQSGGAVYRRLVMRNVACTIGITFTYAVTTVIVVLGFLTTA-PGSIKAAQLADLLPTANIFVTLCVTEMSLPLGFSSCVKSIKAET 175
BLAST of mRNA_S-firma_F_contig10079.151.1 vs. uniprot
Match: A0A6H5JQ65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ65_9PHAE) HSP 1 Score: 144 bits (362), Expect = 2.870e-37 Identity = 86/210 (40.95%), Postives = 123/210 (58.57%), Query Frame = 1 Query: 175 PTTATGASRI-RMLHKRLLAMHFIACIHAIAGIAEYMLPVSDTSC-LTHKAVIGTLLLYDASLVLFLLAKTSVTNGNRELAGWETCITWWSRVYAWGYLPLSAFFLALFLPVVANEEGSRCLTGTRQEG----ERGNFSDTVGFLTNNMMLIVQFVLLLAMFIKPMLLPQSSTQSGGAVYRRVVNRNILCTVCIVFTYTITTIVVVVALL 786 P A G R LH L+ H +A I + + +Y LPV+ ++C THK +L+DASL+ FLL K VTNG R+L+ WE + W R +AW YLPL++ F++ P +G+ C ++ ER + G+ N ML+VQ+VLLL +F++P+++ QSGGAVYR VV RN+ CT +V +Y ITTIV V+ALL Sbjct: 41 PLVARGVQNASRSLHVALVVEHIVALIAIASTVLKYALPVTASNCNATHKISTAFAILFDASLLTFLLFKVDVTNGMRKLSCWEKGVIWICRAFAWIYLPLASIFVSATYPGANIYQGTFCENSFNRDEDVNYEREASDNAFGYAVTNAMLLVQYVLLLILFVRPLMVRLEGVQSGGAVYRSVVVRNVSCTAAVVVSYIITTIVTVIALL 250 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10079.151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 15 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10079.151.1 >prot_S-firma_F_contig10079.151.1 ID=prot_S-firma_F_contig10079.151.1|Name=mRNA_S-firma_F_contig10079.151.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=346bp MAGVVFSVVLSLSCLRSVLVLDAVSSSNIVSRVTQAVSMGTDEVARRRRIback to top mRNA from alignment at S-firma_F_contig10079:1201..4878- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10079.151.1 ID=mRNA_S-firma_F_contig10079.151.1|Name=mRNA_S-firma_F_contig10079.151.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3678bp|location=Sequence derived from alignment at S-firma_F_contig10079:1201..4878- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10079:1201..4878- >mRNA_S-firma_F_contig10079.151.1 ID=mRNA_S-firma_F_contig10079.151.1|Name=mRNA_S-firma_F_contig10079.151.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2076bp|location=Sequence derived from alignment at S-firma_F_contig10079:1201..4878- (Sphaerotrichia firma ET2_F female)back to top |