mRNA_S-firma_F_contig10077.147.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10077.147.1
Unique NamemRNA_S-firma_F_contig10077.147.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10077.147.1 vs. uniprot
Match: S4RLD6_PETMA (DNA cross-link repair 1B n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RLD6_PETMA)

HSP 1 Score: 168 bits (426), Expect = 7.140e-47
Identity = 104/241 (43.15%), Postives = 136/241 (56.43%), Query Frame = 1 
Query:    1 IKPQLVHGLELDETHDVNLDAGRSVVMQVTPIDANHCPGATMFLLDGYWGTYLHTGDFRFNAGMLHHPVLQ-DAEVDTLFIDNSFCDPTFVFPDPKAAVEEAATIITSHPDHDVVIAIDSLGKERFLWEVGRATGERVLLPSSRAAVLEELGDPDIVDWDVFTTITAKARIRVGSRQCVTPAVVKTWNQTRRRPTIAIKPTGWTCSVENSPSLFHVCYSLHSSYEELKAMIAFVRPRIVVP 720
            I  + +  LEL E+H V LD      M VT IDANHCPGA MFL  GY+G  L+TGDFRF   ML  P+LQ +  +D L++DN++C   + FP  + A EE   II +HPDH VVI   SLGKE  L E+    G   + P  R   L+ LG P+     VFTT T + R+RV     +    +  WN     PTIA+ P+G     +   S+F V YS HSSY EL+  +A ++PR +VP
Sbjct:   64 IADKFIRPLELGESHCVPLDGVGKETMTVTLIDANHCPGAVMFLFQGYFGNILYTGDFRFIPEMLKLPLLQTNIIIDVLYLDNTYCPSKWHFPSREDATEEIKIIIRNHPDHQVVIGTYSLGKESLLVELAMEFGWLGVSPE-RMETLQLLGLPN-----VFTTATDECRLRVVDAHQLNSRSMAHWNC--ECPTIAVLPSGNRAGRQPCDSIFIVPYSDHSSYGELRQFVAGLQPRAIVP 296
[Close]
BLAST of mRNA_S-firma_F_contig10077.147.1 vs. uniprot
Match: A0A8J9ZYI1_BRALA (DCLRE1B protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZYI1_BRALA)

HSP 1 Score: 164 bits (416), Expect = 1.240e-45
Identity = 96/248 (38.71%), Postives = 136/248 (54.84%), Query Frame = 1 
Query:    1 IKPQLVHGLELDETHDVNLDAGRSVVMQVTPIDANHCPGATMFLLDGYWGTYLHTGDFRFNAGMLHHPVLQDA-EVDTLFIDNSFCDPTFVFPDPKAAVEEAATIITSHPDHDVVIAIDSL--GKERFLWEVGRATGERVLLPSSRAAVLEELGDPDIVDWDVFTTITAKARIRVGSRQCVTPAVVKTWNQTRRRPTIAIKPTGWTCSVE-----NSPSLFHVCYSLHSSYEELKAMIAFVRPRIVVP 720
            I P LVH LE+ E+H + LD      M VT  DANHCPGA MFL  GY+G+  +TGDFR++  M  H VL +   +D L++DN++C P   FP  K A +    II  HP+HD+V+ I S+  GKE  L E+ +     V++   R   L+ L  P+     VFTT     RIR+  +  +T   ++ WNQ   RPTIAI  +     +      N P +  V YS HSSY EL   ++ ++P+ ++P
Sbjct:   64 IAPALVHTLEVGESHILALDETGQETMMVTVFDANHCPGAVMFLFQGYFGSIFYTGDFRYSPEMFEHEVLANRFSIDVLYLDNTYCSPACKFPSRKQATQMIKDIIACHPEHDIVLGITSMYVGKEDMLVELAKTFQTWVVVTPQRLETLKLLELPN-----VFTTDPEAGRIRIALKYQITRKNMERWNQ--ERPTIAIISSALYTGLNGNPYTNQPDVHIVPYSDHSSYRELHEFVSRLKPKSIIP 304
[Close]
BLAST of mRNA_S-firma_F_contig10077.147.1 vs. uniprot
Match: A0A1A7YH87_9TELE (DNA cross-link repair 1B n=1 Tax=Iconisemion striatum TaxID=60296 RepID=A0A1A7YH87_9TELE)

HSP 1 Score: 167 bits (424), Expect = 2.410e-45
Identity = 98/241 (40.66%), Postives = 136/241 (56.43%), Query Frame = 1 
Query:    1 IKPQLVHGLELDETHDVNLDAGRSVVMQVTPIDANHCPGATMFLLDGYWGTYLHTGDFRFNAGMLHHPVLQ-DAEVDTLFIDNSFCDPTFVFPDPKAAVEEAATIITSHPDHDVVIAIDSLGKERFLWEVGRATGERVLLPSSRAAVLEELGDPDIVDWDVFTTITAKARIRVGSRQCVTPAVVKTWNQTRRRPTIAIKPTGWTCSVENSPSLFHVCYSLHSSYEELKAMIAFVRPRIVVP 720
            +K Q +H LEL E H ++LD      + VT IDANHCPGA MFL +GY+G+ L+TGDFR+   ML  P L+ +  +D L++DN+ CDP    P  + A ++   II SHPDH+VVI + +LGKE  L+E+  A    + +   R   L+ L  PD     VFTT     RIR      V    ++ WN     PT+AI PT     V   P +  V YS HSSY+EL+  ++ ++P  +VP
Sbjct:   67 VKEQWIHPLELGEPHLLHLDDINKERLSVTLIDANHCPGAVMFLFEGYFGSILYTGDFRYCPSMLREPCLRTNTTIDVLYLDNTNCDPNRTLPSRQRATQQIKEIIRSHPDHNVVIGVYALGKESLLFELAMAFQTWIEVSLERMETLKALKFPD-----VFTTEPGAGRIRAVEHSQVCYETMQQWNNDH--PTLAILPTSRPL-VSFCPHVHVVPYSDHSSYQELEDFVSALKPSSIVP 299
[Close]
BLAST of mRNA_S-firma_F_contig10077.147.1 vs. uniprot
Match: A0A8K0A1Q4_BRALA (DCLRE1B protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0A1Q4_BRALA)

HSP 1 Score: 169 bits (427), Expect = 3.580e-45
Identity = 95/246 (38.62%), Postives = 136/246 (55.28%), Query Frame = 1 
Query:    1 IKPQLVHGLELDETHDVNLDAGRSVVMQVTPIDANHCPGATMFLLDGYWGTYLHTGDFRFNAGMLHHPVLQDA-EVDTLFIDNSFCDPTFVFPDPKAAVEEAATIITSHPDHDVVIAIDSLGKERFLWEVGRATGERVLLPSSRAAVLEELGDPDIVDWDVFTTITAKARIRVGSRQCVTPAVVKTWNQTRRRPTIAIKPTGWTCSVE-----NSPSLFHVCYSLHSSYEELKAMIAFVRPRIVVP 720
            I P LVH LE+ E+H + LD      M VT  DANHCPGA MFL  GY+G+  +TGDFR++  M  H  L +   +D L++DN++C P   FP    A +    II+ HP+HD+++ +  LGKE  L E+ +     V++   R   L++L  P+     VFTT     RIRV  +  +T   ++ WNQ   RPTIAI P+     +      N P +  V YS HSSY EL   ++ ++PR ++P
Sbjct:  114 IAPALVHTLEVGESHILALDETGQETMTVTVFDANHCPGAVMFLFQGYFGSIFYTGDFRYSPEMFDHEALANKPSIDVLYLDNTYCSPECKFPSRTQATQMIKDIISRHPEHDIILGMTMLGKEDMLVELAKTFQTWVVVTPQRLETLKQLELPN-----VFTTDPEGGRIRVALKYQITRKNLEKWNQ--ERPTIAILPSALFTGLNGKPYANQPDVHIVPYSDHSSYRELHEFVSRLKPRSIIP 352
[Close]
BLAST of mRNA_S-firma_F_contig10077.147.1 vs. uniprot
Match: UPI0014038CC3 (5' exonuclease Apollo-like isoform X1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014038CC3)

HSP 1 Score: 168 bits (426), Expect = 4.090e-45
Identity = 104/241 (43.15%), Postives = 136/241 (56.43%), Query Frame = 1 
Query:    1 IKPQLVHGLELDETHDVNLDAGRSVVMQVTPIDANHCPGATMFLLDGYWGTYLHTGDFRFNAGMLHHPVLQ-DAEVDTLFIDNSFCDPTFVFPDPKAAVEEAATIITSHPDHDVVIAIDSLGKERFLWEVGRATGERVLLPSSRAAVLEELGDPDIVDWDVFTTITAKARIRVGSRQCVTPAVVKTWNQTRRRPTIAIKPTGWTCSVENSPSLFHVCYSLHSSYEELKAMIAFVRPRIVVP 720
            I  + +  LEL E+H V LD      M VT IDANHCPGA MFL  GY+G  L+TGDFRF   ML  P+LQ +  +D L++DN++C   + FP  + A EE   II +HPDH VVI   SLGKE  L E+    G   + P  R   L+ LG P+     VFTT T + R+RV     +    +  WN     PTIA+ P+G     +   S+F V YS HSSY EL+  +A ++PR +VP
Sbjct:   64 IADKFIRPLELGESHCVPLDGVGKETMTVTLIDANHCPGAVMFLFQGYFGNILYTGDFRFIPEMLKLPLLQTNIIIDVLYLDNTYCPSKWHFPSREDATEEIKIIIRNHPDHQVVIGTYSLGKESLLVELAMEFGWLGVSPE-RMETLQLLGLPN-----VFTTATDECRLRVVDAHQLNSRSMAHWNC--ECPTIAVLPSGNRAGRQPCDSIFIVPYSDHSSYGELRQFVAGLQPRAIVP 296
[Close]
BLAST of mRNA_S-firma_F_contig10077.147.1 vs. uniprot
Match: C3YV80_BRAFL (Lactamase_B domain-containing protein (Fragment) n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YV80_BRAFL)

HSP 1 Score: 162 bits (410), Expect = 4.410e-45
Identity = 95/246 (38.62%), Postives = 135/246 (54.88%), Query Frame = 1 
Query:    1 IKPQLVHGLELDETHDVNLDAGRSVVMQVTPIDANHCPGATMFLLDGYWGTYLHTGDFRFNAGMLHHPVLQDA-EVDTLFIDNSFCDPTFVFPDPKAAVEEAATIITSHPDHDVVIAIDSLGKERFLWEVGRATGERVLLPSSRAAVLEELGDPDIVDWDVFTTITAKARIRVGSRQCVTPAVVKTWNQTRRRPTIAIKPTGWTCSVE-----NSPSLFHVCYSLHSSYEELKAMIAFVRPRIVVP 720
            I P LVH LE+ E+  + LD      M VT  DANHCPGA MFL  GY+G+  +TGDFR++  M  H VL +   +D L++DN++C P   FP    A +    II+ HP+HD+V+ +  LGKE  L E+ +     V++   R   L+ L  P+     VFTT     RIRV  +  +T   ++ WNQ   RPTIAI P+     ++     N P +  V YS HSS  EL   ++ ++PR ++P
Sbjct:   64 IAPALVHTLEVGESRMLPLDETGQETMTVTVFDANHCPGAVMFLFQGYFGSIFYTGDFRYSPEMFDHEVLANRPSIDVLYLDNTYCSPECKFPSRAQATQMIKDIISRHPEHDIVLGMTMLGKEDMLVELAKTFQTWVVVTPQRLETLKLLELPN-----VFTTDPEAGRIRVALKYQITRKNMERWNQ--ERPTIAILPSALYTGLDGKPYANQPDVHIVPYSDHSSNGELHDFVSRLKPRSIIP 302
[Close]
BLAST of mRNA_S-firma_F_contig10077.147.1 vs. uniprot
Match: UPI001E1D6516 (LOW QUALITY PROTEIN: 5' exonuclease Apollo-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D6516)

HSP 1 Score: 164 bits (414), Expect = 5.130e-45
Identity = 95/247 (38.46%), Postives = 136/247 (55.06%), Query Frame = 1 
Query:    1 IKPQLVHGLELDETHDVNLDAGRSVVMQVTPIDANHCPGATMFLLDGYWGTYLHTGDFRFNAGMLHHPVLQ--DAEVDTLFIDNSFCDPTFVFPDPKAAVEEAATIITSHPDHDVVIAIDSLGKERFLWEVGRATGERVLLPSSRAAVLEELGDPDIVDWDVFTTITAKARIRVGSRQCVTPAVVKTWNQTRRRPTIAIKPTGWTCSVENSP-----SLFHVCYSLHSSYEELKAMIAFVRPRIVVP 720
            ++  L+H L+ +    + LD      M VT IDANHCPGA MFL+ GY+GT LHTGDFR+++ M++  VL     +VD L++DN++C P+ VFP    A  +   +I  HP  DV+I + +LGKE+ L  +     E + +P      LE +G PD     VF     K RIRV     V+   V+  NQ     TI I PT     +E +P      +F V YS HSSY EL+  +AF++P+ ++P
Sbjct:   64 VREDLIHSLQTECAEIIYLDNEHQQQMTVTAIDANHCPGAVMFLMQGYFGTILHTGDFRYHSDMVNQSVLSCLSGKVDILYLDNTYCSPSCVFPTRDEATSQIIELIEQHPTKDVLIGMRNLGKEKLLSNIALHFQEWISVPDKFYQTLEIIGAPD-----VFDNGATKHRIRVVPFHVVSNKFVQQVNQNSE--TIVILPTALYHGIEATPYENNDKVFVVPYSDHSSYTELRDFVAFIKPKKIIP 303
[Close]
BLAST of mRNA_S-firma_F_contig10077.147.1 vs. uniprot
Match: A0A8C9SN26_SCLFO (DNA cross-link repair 1B n=4 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9SN26_SCLFO)

HSP 1 Score: 167 bits (424), Expect = 5.560e-45
Identity = 100/241 (41.49%), Postives = 136/241 (56.43%), Query Frame = 1 
Query:    1 IKPQLVHGLELDETHDVNLDAGRSVVMQVTPIDANHCPGATMFLLDGYWGTYLHTGDFRFNAGMLHHPVLQD-AEVDTLFIDNSFCDPTFVFPDPKAAVEEAATIITSHPDHDVVIAIDSLGKERFLWEVGRATGERVLLPSSRAAVLEELGDPDIVDWDVFTTITAKARIRVGSRQCVTPAVVKTWNQTRRRPTIAIKPTGWTCSVENSPSLFHVCYSLHSSYEELKAMIAFVRPRIVVP 720
            +K + +H LE+ E H + LD      + VT +DANHCPGA MFL  GY+GT L+TGDFR+   ML  P L+    +D L++DN+ CDPT   P  + A ++   II +HP HDVVI + SLGKE  L ++       V +   R   L  L  PD     VFTT     RIRV  R  V  A +  WN   +RPT+AI PTG   +  + P++  V YS HSS+ EL+  ++ +RP  +VP
Sbjct:   65 VKEKWIHPLEVGEAHLLPLDDVGKETLTVTLMDANHCPGAVMFLFQGYFGTILYTGDFRYTPTMLREPCLRSHTTIDVLYLDNTHCDPTRTLPSRQQATQQIKEIIRAHPGHDVVIGLCSLGKETLLIQLALEFRTWVEVSPQRMETLRTLELPD-----VFTTEPGAGRIRVVDRSEVRAASLLAWNL--QRPTLAILPTGRPVASFH-PNIHVVPYSDHSSFRELEDFVSALRPASLVP 297
[Close]
BLAST of mRNA_S-firma_F_contig10077.147.1 vs. uniprot
Match: A0A4W6CNZ2_LATCA (DNA cross-link repair 1B n=1 Tax=Lates calcarifer TaxID=8187 RepID=A0A4W6CNZ2_LATCA)

HSP 1 Score: 168 bits (425), Expect = 6.900e-45
Identity = 98/241 (40.66%), Postives = 139/241 (57.68%), Query Frame = 1 
Query:    1 IKPQLVHGLELDETHDVNLDAGRSVVMQVTPIDANHCPGATMFLLDGYWGTYLHTGDFRFNAGMLHHPVLQ-DAEVDTLFIDNSFCDPTFVFPDPKAAVEEAATIITSHPDHDVVIAIDSLGKERFLWEVGRATGERVLLPSSRAAVLEELGDPDIVDWDVFTTITAKARIRVGSRQCVTPAVVKTWNQTRRRPTIAIKPTGWTCSVENSPSLFHVCYSLHSSYEELKAMIAFVRPRIVVP 720
            +K Q +H LEL E + + LD      + VT IDANHCPGA MFL +GY+G+ LHTGDFR+   ML  P L+ +  +D L++DN+ CDP    P  + A ++   II SHP+H+VVI + +LGKE  L E+       + +   R   L+ L  PD     VFTT     RIRV  +  ++ A +  WN  +  PT+AI PT     V   PS++ V YS HSSY+EL+  ++ ++P  +VP
Sbjct:   67 VKEQWIHPLELGEPYLLPLDDIGKEKLTVTLIDANHCPGAVMFLFEGYFGSILHTGDFRYAPSMLREPCLRTNTTIDVLYLDNTNCDPNRTLPSRQRATQQIKEIIRSHPNHNVVIGLYALGKESLLLELAMEFKTWIEVSFERMETLKVLELPD-----VFTTDLGAGRIRVVMQSEISSAALYQWN--KEHPTLAIVPTSRPL-VSFHPSVYVVPYSDHSSYQELEDFVSALKPTSIVP 299
[Close]
BLAST of mRNA_S-firma_F_contig10077.147.1 vs. uniprot
Match: W5MXQ7_LEPOC (DNA cross-link repair 1B n=4 Tax=Lepisosteidae TaxID=7915 RepID=W5MXQ7_LEPOC)

HSP 1 Score: 163 bits (413), Expect = 7.370e-45
Identity = 95/241 (39.42%), Postives = 136/241 (56.43%), Query Frame = 1 
Query:    1 IKPQLVHGLELDETHDVNLDAGRSVVMQVTPIDANHCPGATMFLLDGYWGTYLHTGDFRFNAGMLHHPVLQD-AEVDTLFIDNSFCDPTFVFPDPKAAVEEAATIITSHPDHDVVIAIDSLGKERFLWEVGRATGERVLLPSSRAAVLEELGDPDIVDWDVFTTITAKARIRVGSRQCVTPAVVKTWNQTRRRPTIAIKPTGWTCSVENSPSLFHVCYSLHSSYEELKAMIAFVRPRIVVP 720
            +K + +H LE+ ETH + LD      + VT IDANHCPG+ MFL +GY+GT L+TGDFR+   ML  P L    ++D L++DN+ CDP+   P  + A ++   II  HP H++VI +  LGKE  L E+       V +   R   L  L  PD     VFTT     RIRV S   +  + +  WN  R+ PT+AI PT     V + P ++ V YS HSS++EL+  ++ +RP  ++P
Sbjct:   65 VKEKWIHPLEVGETHMLALDDIGKETLTVTVIDANHCPGSVMFLFEGYFGTILYTGDFRYTPSMLREPCLGSYKKIDVLYLDNTNCDPSRTLPSRQQATQQIKEIIRQHPQHNIVIGLYELGKETLLVELAMEFKTWVEVKPERLETLCALNLPD-----VFTTEPGAGRIRVVSHTEIRMSSLILWN--RQYPTVAILPTSRPVPVLH-PCMYVVPYSDHSSFQELEDFVSALRPASIIP 297
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10077.147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
S4RLD6_PETMA7.140e-4743.15DNA cross-link repair 1B n=1 Tax=Petromyzon marinu... [more]
A0A8J9ZYI1_BRALA1.240e-4538.71DCLRE1B protein n=1 Tax=Branchiostoma lanceolatum ... [more]
A0A1A7YH87_9TELE2.410e-4540.66DNA cross-link repair 1B n=1 Tax=Iconisemion stria... [more]
A0A8K0A1Q4_BRALA3.580e-4538.62DCLRE1B protein n=1 Tax=Branchiostoma lanceolatum ... [more]
UPI0014038CC34.090e-4543.155' exonuclease Apollo-like isoform X1 n=2 Tax=Petr... [more]
C3YV80_BRAFL4.410e-4538.62Lactamase_B domain-containing protein (Fragment) n... [more]
UPI001E1D65165.130e-4538.46LOW QUALITY PROTEIN: 5' exonuclease Apollo-like n=... [more]
A0A8C9SN26_SCLFO5.560e-4541.49DNA cross-link repair 1B n=4 Tax=Scleropages formo... [more]
A0A4W6CNZ2_LATCA6.900e-4540.66DNA cross-link repair 1B n=1 Tax=Lates calcarifer ... [more]
W5MXQ7_LEPOC7.370e-4539.42DNA cross-link repair 1B n=4 Tax=Lepisosteidae Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10077contigS-firma_F_contig10077:883..1602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog10224.XP_002730478.1
Preferred nameDCLRE1B
PFAMsDRMBL,Lactamase_B_2,POT1PC
Max annot lvl33208|Metazoa
KEGG koko:K15340,ko:K15341
GOsGO:0000003,GO:0000075,GO:0000228,GO:0000278,GO:0000723,GO:0000726,GO:0000781,GO:0000784,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003697,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006278,GO:0006281,GO:0006289,GO:0006302,GO:0006303,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007049,GO:0007093,GO:0007346,GO:0008150,GO:0008152,GO:0008408,GO:0008409,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010605,GO:0010639,GO:0010833,GO:0015630,GO:0016043,GO:0016233,GO:0016604,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022402,GO:0022616,GO:0031323,GO:0031324,GO:0031627,GO:0031848,GO:0031860,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032205,GO:0033043,GO:0033044,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035312,GO:0036297,GO:0042162,GO:0042592,GO:0042802,GO:0042803,GO:0043047,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043247,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044877,GO:0045786,GO:0045930,GO:0045934,GO:0046483,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051276,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0061730,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0097159,GO:0098687,GO:0098847,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1903047,GO:1904356,GO:1904357,GO:2001251
Evalue1.27e-46
EggNOG OGsCOG1236@1|root,KOG1361@2759|Eukaryota,38USP@33154|Opisthokonta,3BGM1@33208|Metazoa,3CZ8Y@33213|Bilateria
Descriptiontelomeric loop formation
COG categoryL
BRITEko00000,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size720
Cds size720
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815532.5963314-CDS-S-firma_F_contig10077:882..16021622815532.5963314-CDS-S-firma_F_contig10077:882..1602Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10077 883..1602 -
1696949394.4905927-CDS-S-firma_F_contig10077:882..16021696949394.4905927-CDS-S-firma_F_contig10077:882..1602Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10077 883..1602 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10077.147.1prot_S-firma_F_contig10077.147.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10077 883..1602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10077.147.1

>prot_S-firma_F_contig10077.147.1 ID=prot_S-firma_F_contig10077.147.1|Name=mRNA_S-firma_F_contig10077.147.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=240bp
IKPQLVHGLELDETHDVNLDAGRSVVMQVTPIDANHCPGATMFLLDGYWG
TYLHTGDFRFNAGMLHHPVLQDAEVDTLFIDNSFCDPTFVFPDPKAAVEE
AATIITSHPDHDVVIAIDSLGKERFLWEVGRATGERVLLPSSRAAVLEEL
GDPDIVDWDVFTTITAKARIRVGSRQCVTPAVVKTWNQTRRRPTIAIKPT
GWTCSVENSPSLFHVCYSLHSSYEELKAMIAFVRPRIVVP
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mRNA from alignment at S-firma_F_contig10077:883..1602-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10077.147.1 ID=mRNA_S-firma_F_contig10077.147.1|Name=mRNA_S-firma_F_contig10077.147.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=720bp|location=Sequence derived from alignment at S-firma_F_contig10077:883..1602- (Sphaerotrichia firma ET2_F female)
ATAAAACCCCAGCTTGTACACGGCCTGGAGCTTGACGAAACCCATGACGT
GAACCTTGACGCCGGGCGGTCTGTGGTGATGCAAGTGACGCCCATTGATG
CGAACCATTGTCCGGGGGCCACCATGTTCCTCCTGGACGGGTACTGGGGG
ACGTACCTCCACACCGGGGACTTTCGCTTCAACGCCGGCATGTTGCACCA
CCCCGTGTTGCAGGACGCGGAGGTGGACACGCTGTTTATTGACAACTCCT
TCTGCGACCCGACGTTCGTGTTTCCGGACCCAAAGGCCGCCGTTGAGGAG
GCGGCCACCATCATTACCTCCCACCCGGACCACGACGTCGTGATTGCCAT
TGACAGCTTGGGGAAGGAGCGGTTTTTGTGGGAGGTAGGCAGGGCCACTG
GGGAGCGCGTGTTGCTGCCGTCCTCCCGGGCGGCGGTGTTGGAGGAGCTG
GGCGACCCGGACATTGTGGACTGGGACGTGTTCACCACCATCACCGCAAA
GGCCCGCATCCGTGTCGGAAGCCGGCAGTGCGTCACCCCCGCCGTCGTCA
AAACCTGGAACCAAACCAGGAGGCGGCCGACCATAGCCATTAAACCCACG
GGGTGGACATGCTCCGTGGAAAACTCCCCCAGCCTGTTCCACGTCTGCTA
CTCCCTCCACAGCAGCTACGAGGAGCTCAAGGCCATGATTGCGTTTGTGC
GCCCCCGAATCGTGGTGCCC
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Coding sequence (CDS) from alignment at S-firma_F_contig10077:883..1602-

>mRNA_S-firma_F_contig10077.147.1 ID=mRNA_S-firma_F_contig10077.147.1|Name=mRNA_S-firma_F_contig10077.147.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1440bp|location=Sequence derived from alignment at S-firma_F_contig10077:883..1602- (Sphaerotrichia firma ET2_F female)
ATAAAACCCCAGCTTGTACACGGCCTGGAGCTTGACGAAACCCATGACGT
GAACCTTGACGCCGGGCGGTCTGTGGTGATGCAAGTGACGCCCATTGATG
CGAACCATTGTCCGGGGGCCACCATGTTCCTCCTGGACGGGTACTGGGGG
ACGTACCTCCACACCGGGGACTTTCGCTTCAACGCCGGCATGTTGCACCA
CCCCGTGTTGCAGGACGCGGAGGTGGACACGCTGTTTATTGACAACTCCT
TCTGCGACCCGACGTTCGTGTTTCCGGACCCAAAGGCCGCCGTTGAGGAG
GCGGCCACCATCATTACCTCCCACCCGGACCACGACGTCGTGATTGCCAT
TGACAGCTTGGGGAAGGAGCGGTTTTTGTGGGAGGTAGGCAGGGCCACTG
GGGAGCGCGTGTTGCTGCCGTCCTCCCGGGCGGCGGTGTTGGAGGAGCTG
GGCGACCCGGACATTGTGGACTGGGACGTGTTCACCACCATCACCGCAAA
GGCCCGCATCCGTGTCGGAAGCCGGCAGTGCGTCACCCCCGCCGTCGTCA
AAACCTGGAACCAAACCAGGAGGCGGCCGACCATAGCCATTAAACCCACG
GGGTGGACATGCTCCGTGGAAAACTCCCCCAGCCTGTTCCACGTCTGCTA
CTCCCTCCACAGCAGCTACGAGGAGCTCAAGGCCATGATTGCGTTTGTGC
GCCCCCGAATCGTGGTGCCCATAAAACCCCAGCTTGTACACGGCCTGGAG
CTTGACGAAACCCATGACGTGAACCTTGACGCCGGGCGGTCTGTGGTGAT
GCAAGTGACGCCCATTGATGCGAACCATTGTCCGGGGGCCACCATGTTCC
TCCTGGACGGGTACTGGGGGACGTACCTCCACACCGGGGACTTTCGCTTC
AACGCCGGCATGTTGCACCACCCCGTGTTGCAGGACGCGGAGGTGGACAC
GCTGTTTATTGACAACTCCTTCTGCGACCCGACGTTCGTGTTTCCGGACC
CAAAGGCCGCCGTTGAGGAGGCGGCCACCATCATTACCTCCCACCCGGAC
CACGACGTCGTGATTGCCATTGACAGCTTGGGGAAGGAGCGGTTTTTGTG
GGAGGTAGGCAGGGCCACTGGGGAGCGCGTGTTGCTGCCGTCCTCCCGGG
CGGCGGTGTTGGAGGAGCTGGGCGACCCGGACATTGTGGACTGGGACGTG
TTCACCACCATCACCGCAAAGGCCCGCATCCGTGTCGGAAGCCGGCAGTG
CGTCACCCCCGCCGTCGTCAAAACCTGGAACCAAACCAGGAGGCGGCCGA
CCATAGCCATTAAACCCACGGGGTGGACATGCTCCGTGGAAAACTCCCCC
AGCCTGTTCCACGTCTGCTACTCCCTCCACAGCAGCTACGAGGAGCTCAA
GGCCATGATTGCGTTTGTGCGCCCCCGAATCGTGGTGCCC
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