mRNA_S-firma_F_contig10075.145.1 (mRNA) Sphaerotrichia firma ET2_F female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10075.145.1 vs. uniprot
Match: D8LQY0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY0_ECTSI) HSP 1 Score: 197 bits (502), Expect = 9.090e-59 Identity = 133/195 (68.21%), Postives = 144/195 (73.85%), Query Frame = 1 Query: 1 AAAAEPDAIDVGTTPNYPPYIHQQLREQHERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYRGHGVGGLLHGPGVGYSQPLSSS------YGMPASREQAAAAVAAITARQEAMSSAGHPKIPLPSAAVLAEHGVDMIGDSLSKNPWSRDEDDSLMRLVEQYGPKRWSVIAMHLPGRIGKQCRER 567
A AAEPD+IDVGTTP+YPP++ +Q+REQHER XXXXXXXXXXXXXXXXXXXXX G G G G GVG YG+PASREQAAAAVAAI ARQEA++S HPKIP+PSAAVL E+G M GDSLSKNPWSRDEDDSLMRLVEQYG KRWSVIAMHLPGRIGKQCRER
Sbjct: 2 APAAEPDSIDVGTTPDYPPHVERQMREQHEREREKHHLAEQARSAXXXXXXXXXXXXXXXXXXXXXQALAAEGGGAVGYRFG-GVGXXXXXXXXXXXPMPYGLPASREQAAAAVAAIAARQEALASGAHPKIPMPSAAVLVENGGGMDGDSLSKNPWSRDEDDSLMRLVEQYGAKRWSVIAMHLPGRIGKQCRER 195
BLAST of mRNA_S-firma_F_contig10075.145.1 vs. uniprot
Match: A0A6H5L284_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L284_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 6.580e-16 Identity = 75/130 (57.69%), Postives = 84/130 (64.62%), Query Frame = 1 Query: 7 AAEPDAIDVGTTPNYPPYIHQQLREQHERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYRGHGVGGLLHGPGVGYSQPLSS----SYGMPASREQAAAAVAAITARQEAMSSAGHPKIPL 384
AAEPD+IDVGTTP+YPP++ Q+REQHER XXXXXXXXXXXXXXXXXXXX G G G G G S YG+PASREQAAAAVAAI ARQEA++S HPKIP+
Sbjct: 279 AAEPDSIDVGTTPDYPPHVELQMREQHEREREKHHLAEQVRSAAAXXXXXXXXXXXXXXXXXXXXALAAEGGGAVGGYQGFGXXXXXXXXSLPPMPYGLPASREQAAAAVAAIAARQEALASGAHPKIPM 408
BLAST of mRNA_S-firma_F_contig10075.145.1 vs. uniprot
Match: A0A2P4Y2W3_9STRA (R2R3 Myb protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y2W3_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 1.190e-15 Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1 Query: 430 DSLSKNPWSRDEDDSLMRLVEQYGPKRWSVIAMHLPGRIGKQCRER 567
DS SK PW+R+E+D LM+LV+QYG KRWS+IAMHLPGR+GKQCRER
Sbjct: 45 DSNSKRPWTREENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRER 90
BLAST of mRNA_S-firma_F_contig10075.145.1 vs. uniprot
Match: A0A3R7G675_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7G675_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 2.040e-15 Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1 Query: 430 DSLSKNPWSRDEDDSLMRLVEQYGPKRWSVIAMHLPGRIGKQCRER 567
DS SK PW+R+E+D LM+LV+QYG KRWS+IAMHLPGR+GKQCRER
Sbjct: 87 DSNSKRPWTREENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRER 132
BLAST of mRNA_S-firma_F_contig10075.145.1 vs. uniprot
Match: H3H745_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H745_PHYRM) HSP 1 Score: 83.6 bits (205), Expect = 2.130e-15 Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1 Query: 430 DSLSKNPWSRDEDDSLMRLVEQYGPKRWSVIAMHLPGRIGKQCRER 567
DS SK PW+R+E+D LM+LV+QYG KRWS+IAMHLPGR+GKQCRER
Sbjct: 74 DSNSKRPWTREENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRER 119
BLAST of mRNA_S-firma_F_contig10075.145.1 vs. uniprot
Match: D0N805_PHYIT (Myb-like DNA-binding protein, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N805_PHYIT) HSP 1 Score: 83.6 bits (205), Expect = 2.140e-15 Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1 Query: 430 DSLSKNPWSRDEDDSLMRLVEQYGPKRWSVIAMHLPGRIGKQCRER 567
DS SK PW+R+E+D LM+LV+QYG KRWS+IAMHLPGR+GKQCRER
Sbjct: 100 DSNSKRPWTREENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRER 145
BLAST of mRNA_S-firma_F_contig10075.145.1 vs. uniprot
Match: A0A225WNS1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WNS1_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 2.150e-15 Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1 Query: 430 DSLSKNPWSRDEDDSLMRLVEQYGPKRWSVIAMHLPGRIGKQCRER 567
DS SK PW+R+E+D LM+LV+QYG KRWS+IAMHLPGR+GKQCRER
Sbjct: 83 DSNSKRPWTREENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRER 128
BLAST of mRNA_S-firma_F_contig10075.145.1 vs. uniprot
Match: G4YSZ1_PHYSP (Uncharacterized protein n=2 Tax=Phytophthora sojae TaxID=67593 RepID=G4YSZ1_PHYSP) HSP 1 Score: 83.6 bits (205), Expect = 2.180e-15 Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1 Query: 430 DSLSKNPWSRDEDDSLMRLVEQYGPKRWSVIAMHLPGRIGKQCRER 567
DS SK PW+R+E+D LM+LV+QYG KRWS+IAMHLPGR+GKQCRER
Sbjct: 82 DSNSKRPWTREENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRER 127
BLAST of mRNA_S-firma_F_contig10075.145.1 vs. uniprot
Match: A0A0W8DMT8_PHYNI (Histone-lysine N-methyltransferase setd3 n=23 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DMT8_PHYNI) HSP 1 Score: 83.6 bits (205), Expect = 2.200e-15 Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1 Query: 430 DSLSKNPWSRDEDDSLMRLVEQYGPKRWSVIAMHLPGRIGKQCRER 567
DS SK PW+R+E+D LM+LV+QYG KRWS+IAMHLPGR+GKQCRER
Sbjct: 100 DSNSKRPWTREENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRER 145
BLAST of mRNA_S-firma_F_contig10075.145.1 vs. uniprot
Match: A0A6A3UHX4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UHX4_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 2.240e-15 Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1 Query: 430 DSLSKNPWSRDEDDSLMRLVEQYGPKRWSVIAMHLPGRIGKQCRER 567
DS SK PW+R+E+D LM+LV+QYG KRWS+IAMHLPGR+GKQCRER
Sbjct: 75 DSNSKRPWTREENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRER 120 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10075.145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10075.145.1 >prot_S-firma_F_contig10075.145.1 ID=prot_S-firma_F_contig10075.145.1|Name=mRNA_S-firma_F_contig10075.145.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=190bp AAAAEPDAIDVGTTPNYPPYIHQQLREQHEREREEHEALQRARAAQASAAback to top mRNA from alignment at S-firma_F_contig10075:3490..5316+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10075.145.1 ID=mRNA_S-firma_F_contig10075.145.1|Name=mRNA_S-firma_F_contig10075.145.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1827bp|location=Sequence derived from alignment at S-firma_F_contig10075:3490..5316+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10075:3490..5316+ >mRNA_S-firma_F_contig10075.145.1 ID=mRNA_S-firma_F_contig10075.145.1|Name=mRNA_S-firma_F_contig10075.145.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1140bp|location=Sequence derived from alignment at S-firma_F_contig10075:3490..5316+ (Sphaerotrichia firma ET2_F female)back to top |