Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 396 |
| Cds size | 393 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815532.422051-CDS-S-firma_F_contig10075:1289..1604 | 1622815532.422051-CDS-S-firma_F_contig10075:1289..1604 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10075 1290..1604 + |
| 1696949394.3756695-CDS-S-firma_F_contig10075:1289..1604 | 1696949394.3756695-CDS-S-firma_F_contig10075:1289..1604 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10075 1290..1604 + |
| 1622815532.4354286-CDS-S-firma_F_contig10075:2871..2949 | 1622815532.4354286-CDS-S-firma_F_contig10075:2871..2949 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10075 2872..2949 + |
| 1696949394.3851132-CDS-S-firma_F_contig10075:2871..2949 | 1696949394.3851132-CDS-S-firma_F_contig10075:2871..2949 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10075 2872..2949 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10075.144.1 >prot_S-firma_F_contig10075.144.1 ID=prot_S-firma_F_contig10075.144.1|Name=mRNA_S-firma_F_contig10075.144.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=131bp
KSYPLGFCGSLILPSFKGPRRQRPLFFHLRRRGLDISIKVVRANLSNKIT
PREGGGDQNPQETHPRRPSQREHRGIRSTNTCGDRHRQQHMSAPQLGGAI
PPDISNAEGIHRGTSAASAAGPPAKLAASLG back to topmRNA from alignment at S-firma_F_contig10075:1290..2950+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-firma_F_contig10075.144.1 ID=mRNA_S-firma_F_contig10075.144.1|Name=mRNA_S-firma_F_contig10075.144.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1661bp|location=Sequence derived from alignment at S-firma_F_contig10075:1290..2950+ (Sphaerotrichia firma ET2_F female)
AAATCGTATCCCCTAGGCTTTTGTGGCTCTCTAATCTTACCGAGCTTCAA
GGGCCCGCGGCGCCAACGCCCGCTCTTTTTCCACCTACGCCGCCGCGGTT
TGGACATATCAATCAAGGTCGTGCGAGCGAACCTAAGCAACAAGATAACT
CCCCGTGAGGGAGGGGGAGACCAAAACCCACAAGAGACACACCCGAGGAG
ACCAAGTCAGCGCGAGCACCGAGGGATACGCAGCACCAATACCTGTGGAG
ATAGACATCGGCAGCAGCACATGTCGGCGCCGCAGCTGGGAGGTGCTATT
CCGCCGGACATATCGGTGAGAGAGCCGTTCGGGTCGTGGTGAAACTCAGC
TGACTACGTAGCTGTGTGTGTTTTTACCGTGCGCGCGGCGGATCGACTCT
GCCTCACGAAGCCACCATCACTTGTACTGCTCTGTCGGTGATTCGTGGCC
GCGGATGTATCGTACACACCCAGGATTTCATTCACGGGGTGGTTCTGGCG
ACAGAGTGTTTCAAACGCGATTCCTTCGCACAGCGGGTTGCCGAATTCGG
AGTTTGGTAGCCGTCTCTGTGTGCCGCAGATCCCGTATAGGCAGAGCGCC
TCTAATTTATGTATCGCCGTAATCCTATCTTTAGTGTTTGTCTGCTACTG
CCGGTGTACAACCCCAGTTTGCTACTGTGTGCGTGAACACAAATGGGTGT
GCATGTAGTTGAGGGTTCCCTTGGGCATCTCATGCCAACCTCCCGATCTT
ACAGGATGCTCATGGCACTGTGTTCCCTGGGTTGGTGTTGGCGTTGAAAT
AAGAGTTGATCAGCCATGCGGGTGTTGGTTGTTTCTCGCGATTAAACCGA
CCCACCGAGGTATTTATGTATTTATACAAGCAGCAGCAGACGATTGGACT
TGATGGGTGGTTTGGGCGTCATGCCCGCATGAGAGACCGACATTCCACTT
CCGTGAGCCGCTTCAGTCAGCTGCCGACATGTTGTTGCCTTCACGCCGCA
GCCGCAGTTTCGTCACGCACTCATCCAACACATTCTGTGTCCAAGCTCGG
CTCCGGGATTGAAAAACACAAAACACAGCTCCGCGATGGTCCCTGAACTA
CATCCAGTTCGTGAACAGGCGCTCGAATGAACACTGATAACCCTGCGTGA
TTGACGCGAACACCTTCTGTCATGCCACGCATATGTAGCCTTGCGGCTGT
GCAAGGGGCACGTTCTAAGGTGGACTGAACGCCTACGGCGGCGGAGAGGC
TCCCCTGCACGAAAGCAAAAAGGCAACAAAGTACAATGTAGTGAAGTTGA
CTGCCTTGCGTATCCTTCGCATCATACGGTATATATAAATGGATGCTTCT
TTTTCGAAACAAATGGTTGGTTCGAGGATGGGGAAAAGCATTAAAACTCC
TCGGCGGGGTGGTTTTCTCAAGTTCCAGGCCGTCCTTTGTCTACAAGGTA
CCTGGCACAATCGACAGGCTACAGGCACGACGCCTAGAATACGCCTTGGC
GCCTTGACGCAAGCGCCAACTAACCATCATCCACCCGAATCATTGCTACT
GCTGTCGCTCGCGCACCCCCCGCTCCCCCCAGAACGCCGAAGGTATCCAT
CGAGGAACATCAGCCGCCTCTGCTGCCGGCCCCCCCGCCAAGCTAGCGGC
CTCTCTCGGCG back to topCoding sequence (CDS) from alignment at S-firma_F_contig10075:1290..2950+ >mRNA_S-firma_F_contig10075.144.1 ID=mRNA_S-firma_F_contig10075.144.1|Name=mRNA_S-firma_F_contig10075.144.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=786bp|location=Sequence derived from alignment at S-firma_F_contig10075:1290..2950+ (Sphaerotrichia firma ET2_F female)
AAATCGTATCCCCTAGGCTTTTGTGGCTCTCTAATCTTACCGAGCTTCAA
GGGCCCGCGGCGCCAACGCCCGCTCTTTTTCCACCTACGCCGCCGCGGTT
TGGACATATCAATCAAGGTCGTGCGAGCGAACCTAAGCAACAAGATAACT
CCCCGTGAGGGAGGGGGAGACCAAAACCCACAAGAGACACACCCGAGGAG
ACCAAGTCAGCGCGAGCACCGAGGGATACGCAGCACCAATACCTGTGGAG
ATAGACATCGGCAGCAGCACATGTCGGCGCCGCAGCTGGGAGGTGCTATT
CCGCCGGACATATCGAAATCGTATCCCCTAGGCTTTTGTGGCTCTCTAAT
CTTACCGAGCTTCAAGGGCCCGCGGCGCCAACGCCCGCTCTTTTTCCACC
TACGCCGCCGCGGTTTGGACATATCAATCAAGGTCGTGCGAGCGAACCTA
AGCAACAAGATAACTCCCCGTGAGGGAGGGGGAGACCAAAACCCACAAGA
GACACACCCGAGGAGACCAAGTCAGCGCGAGCACCGAGGGATACGCAGCA
CCAATACCTGTGGAGATAGACATCGGCAGCAGCACATGTCGGCGCCGCAG
CTGGGAGGTGCTATTCCGCCGGACATATCGAACGCCGAAGGTATCCATCG
AGGAACATCAGCCGCCTCTGCTGCCGGCCCCCCCGCCAAGCTAGCGGCCT
CTCTCGGCAACGCCGAAGGTATCCATCGAGGAACATCAGCCGCCTCTGCT
GCCGGCCCCCCCGCCAAGCTAGCGGCCTCTCTCGGC back to top
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