mRNA_S-firma_F_contig1007.141.1 (mRNA) Sphaerotrichia firma ET2_F female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1007.141.1 vs. uniprot
Match: D8LTU5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTU5_ECTSI) HSP 1 Score: 241 bits (616), Expect = 3.460e-73 Identity = 131/162 (80.86%), Postives = 141/162 (87.04%), Query Frame = 1 Query: 1 MKFAGGSVVLGLMLAWAGCSQAFVVAPAGTGLAG-VSTGRAAATAAGPRMMLP--PFAGAAVAHLINSSPINPEHLVSTKAQPTHLVAYKETREGLYGPYEVEVTEKAPETDFGISTFKKKEDTEEGRDKYTSVLAVLLAGSFIIPMVQYWWYIRDDDRPIQ 477
MKF GS GL+L GCSQAFV P TGL G VS GR+AA+A+GPRMMLP PFAGAAVAHLI S+PINPEHLVS K+QPTHLVAYKETREGLYGPYEVEV E+APETDFGISTFKKKE+TEEGRDKYTSVLAVLLAGSF+IPMVQYWWYIRDDDR I+
Sbjct: 1 MKFTAGSS--GLVLGLVGCSQAFVTPPV-TGLGGRVSAGRSAASASGPRMMLPMAPFAGAAVAHLIGSNPINPEHLVSAKSQPTHLVAYKETREGLYGPYEVEVQERAPETDFGISTFKKKEETEEGRDKYTSVLAVLLAGSFVIPMVQYWWYIRDDDREIR 159
BLAST of mRNA_S-firma_F_contig1007.141.1 vs. uniprot
Match: A0A835ZB47_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB47_9STRA) HSP 1 Score: 115 bits (287), Expect = 2.690e-26 Identity = 73/150 (48.67%), Postives = 98/150 (65.33%), Query Frame = 1 Query: 25 VLGLMLAWAGCSQAFVVAPAGTGLAGVSTGRAAATAAGPRMMLPPFAGAAVAHLINSSPINPEHLVSTKAQPTH---LVAYKETREGLYGPYEVEVTEKAPETDFGISTFKKKEDTEEGRDKYTSVLAVLLAGSFIIPMVQYWWYIRDDD 465
VL L+L C AFVV P+G GLA VS A + P M+L A AA A +I+++P + ++L + QP + +++ ETREG YG Y V+V E+ E D STFK KE TE+G++KY +VL +LL GSF+IPMVQYWWYIRD+D
Sbjct: 6 VLSLLLVATACVSAFVV-PSG-GLARVS-----ARSQAPSMLLGGVAAAAAASIISTAPASTDYLRTLHNQPVNSWTMLSKTETREGFYGEYSVDVKEQ--EVDNADSTFKSKEATEKGKNKYNAVLLILLVGSFVIPMVQYWWYIRDED 146
BLAST of mRNA_S-firma_F_contig1007.141.1 vs. uniprot
Match: A0A7S2CEE7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CEE7_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 9.550e-18 Identity = 54/120 (45.00%), Postives = 78/120 (65.00%), Query Frame = 1 Query: 106 STGRAAATAAGPRMMLPPFAGAAVAHLINSSPINPEHLVSTKAQPTHLVAYK-ETREGLYGPYEVEVTEKAPETDFGISTFKKKEDTEEGRDKYTSVLAVLLAGSFIIPMVQYWWYIRDD 462
S RA A P ++ AGAA A +++S P++ L + P + A K ET+EG+YG Y+VEV E+A D STFK + T++G++KY +VL VLL GSF+IPM+QY+WY+R+D
Sbjct: 25 SFNRAVTPRAVPVALVDVAAGAAAAAVLSSQPMDTSMLSNMANVPMMVSATKYETKEGIYGEYQVEVKEQA--VDDARSTFKSAKATKKGKNKYVAVLGVLLVGSFLIPMLQYFWYVRED 142
BLAST of mRNA_S-firma_F_contig1007.141.1 vs. uniprot
Match: A0A1Z5K6I3_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K6I3_FISSO) HSP 1 Score: 88.6 bits (218), Expect = 7.240e-17 Identity = 48/102 (47.06%), Postives = 68/102 (66.67%), Query Frame = 1 Query: 163 AGAAVAHLINSSPIN-PEHLVSTKAQPTHLVAYKETREGLYGPYEVEVTEKAPETDFGISTFKKKEDTEEGRDKYTSVLAVLLAGSFIIPMVQYWWYIRDDD 465
AGA A I SS + P + A PT ++A K REG+YG YE+++ E+ + D STFK ++T+ + KYT++LA+L+ GSFIIPM QYWWY++DDD
Sbjct: 39 AGAFAAFTIASSVLTMPPAANAVPAFPTQVLAEKVIREGVYGEYEIDLPEQ--KYDDARSTFKSAKETKTKKGKYTALLAILIVGSFIIPMAQYWWYVKDDD 138
BLAST of mRNA_S-firma_F_contig1007.141.1 vs. uniprot
Match: A0A7S2B691_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B691_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 9.560e-17 Identity = 42/71 (59.15%), Postives = 54/71 (76.06%), Query Frame = 1 Query: 250 VAYKETREGLYGPYEVEVTEKAPETDFGISTFKKKEDTEEGRDKYTSVLAVLLAGSFIIPMVQYWWYIRDD 462
VA KETREG+YG YEVE+ K + D TFK K+DT +G+ KY +VL VLL GSF+IPM+QY+WY+R+D
Sbjct: 79 VAVKETREGVYGTYEVEI--KPQDVDDAAGTFKSKDDTVKGKKKYIAVLGVLLFGSFVIPMLQYFWYVRED 147
BLAST of mRNA_S-firma_F_contig1007.141.1 vs. uniprot
Match: A0A7R9WM32_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WM32_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 6.300e-16 Identity = 41/89 (46.07%), Postives = 64/89 (71.91%), Query Frame = 1 Query: 199 PINPEHLVSTKAQPTHLVAYKETREGLYGPYEVEVTEKAPETDFGISTFKKKEDTEEGRDKYTSVLAVLLAGSFIIPMVQYWWYIRDDD 465
P+ P + S+ T++VA K TR+G+YG YEV++T+ + + STFK ++T+ + KYT++LA+L+ GSFI+PM QY+WY+RDDD
Sbjct: 59 PMQPPAIYSS----TNMVAEKVTRQGMYGDYEVDLTQTVDDAE---STFKSAKETKTKKGKYTAILAILIVGSFIVPMAQYFWYVRDDD 140
BLAST of mRNA_S-firma_F_contig1007.141.1 vs. uniprot
Match: A0A7S3L8Q2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L8Q2_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 2.170e-15 Identity = 50/103 (48.54%), Postives = 67/103 (65.05%), Query Frame = 1 Query: 166 GAAVAHLINSSPIN---PEHLVSTKAQPTHLVAYKETREGLYGPYEVEVTEKAPETDFGISTFKKKEDTEEGRDKYTSVLAVLLAGSFIIPMVQYWWYIRDDD 465
GAA A LI SS ++ P S + +VA K REG+YG YEV+V ++ D STFK ++T+ + KYT++LAVL+ GSFIIPM QY+WY+RDDD
Sbjct: 37 GAAAAALIASSVLSWAPPPADASFAFTSSQVVAEKVIREGVYGEYEVDVPDQV--YDDARSTFKSAKETKTKKGKYTALLAVLIVGSFIIPMAQYFWYVRDDD 137
BLAST of mRNA_S-firma_F_contig1007.141.1 vs. uniprot
Match: A0A7S2I237_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I237_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 5.960e-14 Identity = 40/72 (55.56%), Postives = 54/72 (75.00%), Query Frame = 1 Query: 247 LVAYKETREGLYGPYEVEVTEKAPETDFGISTFKKKEDTEEGRDKYTSVLAVLLAGSFIIPMVQYWWYIRDD 462
+VA K TREGLYG YEV++ + E D STFK ++T+ + KYT++LAVL+ GSFIIPM QY+WY++DD
Sbjct: 120 VVAEKVTREGLYGSYEVDLVQ---EVDKAESTFKSAKETKSKKGKYTALLAVLVVGSFIIPMAQYFWYVKDD 188
BLAST of mRNA_S-firma_F_contig1007.141.1 vs. uniprot
Match: A0A7S2SKG2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKG2_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 6.350e-14 Identity = 47/104 (45.19%), Postives = 68/104 (65.38%), Query Frame = 1 Query: 160 FAGAAVAHLINSSPI-NPEHLVSTKAQPTH-LVAYKETREGLYGPYEVEVTEKAPETDFGISTFKKKEDTEEGRDKYTSVLAVLLAGSFIIPMVQYWWYIRDDD 465
FA A++A + SPI P + + T +VA + TREGLY YEV+V ++ D ST+K ++T+ + KYT+++AVL+ GSFIIPM QY+WY+RDDD
Sbjct: 8 FAAASIASSLVLSPIAEPVDAMDVPSFGTSTVVAERVTREGLYREYEVDVEDQV--YDDARSTYKSAKETKTKKGKYTALIAVLVVGSFIIPMAQYFWYVRDDD 109
BLAST of mRNA_S-firma_F_contig1007.141.1 vs. uniprot
Match: A0A7S2U6N4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U6N4_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 8.240e-14 Identity = 42/102 (41.18%), Postives = 67/102 (65.69%), Query Frame = 1 Query: 160 FAGAAVAHLINSSPINPEHLVSTKAQPTHLVAYKETREGLYGPYEVEVTEKAPETDFGISTFKKKEDTEEGRDKYTSVLAVLLAGSFIIPMVQYWWYIRDDD 465
A A A + N++ P +S+ +++VA K TR+G+Y Y+V++T+ + D ST+K ++T+ + KYT+VLA+ + GSFIIPM QY+WY+RDDD
Sbjct: 46 IASNAFAPMANAADFAPPAFLSS----SNVVAEKVTRQGMYQDYDVDITQ---QVDDARSTYKPAKETKSKKGKYTAVLAIFIVGSFIIPMAQYFWYVRDDD 140 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1007.141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1007.141.1 >prot_S-firma_F_contig1007.141.1 ID=prot_S-firma_F_contig1007.141.1|Name=mRNA_S-firma_F_contig1007.141.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=160bp MKFAGGSVVLGLMLAWAGCSQAFVVAPAGTGLAGVSTGRAAATAAGPRMMback to top mRNA from alignment at S-firma_F_contig1007:16887..22730- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1007.141.1 ID=mRNA_S-firma_F_contig1007.141.1|Name=mRNA_S-firma_F_contig1007.141.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=5844bp|location=Sequence derived from alignment at S-firma_F_contig1007:16887..22730- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1007:16887..22730- >mRNA_S-firma_F_contig1007.141.1 ID=mRNA_S-firma_F_contig1007.141.1|Name=mRNA_S-firma_F_contig1007.141.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=960bp|location=Sequence derived from alignment at S-firma_F_contig1007:16887..22730- (Sphaerotrichia firma ET2_F female)back to top |