mRNA_S-firma_F_contig10064.134.1 (mRNA) Sphaerotrichia firma ET2_F female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_S-firma_F_contig10064.134.1 vs. uniprot
Match: A0A5J4YQK9_PORPP (Chromodomain-helicase-DNA-binding protein 4 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YQK9_PORPP) HSP 1 Score: 68.2 bits (165), Expect = 5.470e-12 Identity = 26/47 (55.32%), Postives = 31/47 (65.96%), Query Frame = 1 Query: 25 IHESFCYACQDGGRLICCSSCVRVSHLECAQPPLAAVPDDDWVCHVC 165 +H+S CY C +GGRL+CC+ C V HL C QPPL A P DW C C Sbjct: 365 LHDSCCYMCNEGGRLLCCNGCSHVVHLGCVQPPLPATPRGDWYCSDC 411
BLAST of mRNA_S-firma_F_contig10064.134.1 vs. uniprot
Match: A0A2G8LE03_STIJA (Putative nucleosome-remodeling factor subunit BPTF-like n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LE03_STIJA) HSP 1 Score: 67.0 bits (162), Expect = 1.400e-11 Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 1 Query: 10 SQDAAIHESFCYACQDGGRLICCSSCVRVSHLECAQPPLAAVPDDDWVCHVC 165 S+ A ++ C +C G LICC +C V HLEC +PPL AVP+DDW+C VC Sbjct: 140 SEGAITYDDHCRSCHRLGDLICCETCSAVYHLECVEPPLKAVPEDDWLCSVC 191
BLAST of mRNA_S-firma_F_contig10064.134.1 vs. uniprot
Match: A0A3B3SLR2_9TELE (DNA helicase n=4 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3SLR2_9TELE) HSP 1 Score: 66.2 bits (160), Expect = 2.620e-11 Identity = 26/51 (50.98%), Postives = 32/51 (62.75%), Query Frame = 1 Query: 13 QDAAIHESFCYACQDGGRLICCSSCVRVSHLECAQPPLAAVPDDDWVCHVC 165 Q+ H FC C+DGG L+CC SC HL C PPLA++PD +WVC C Sbjct: 359 QEDDNHMEFCRVCKDGGELLCCDSCPSSYHLRCLNPPLASIPDGEWVCPRC 409
BLAST of mRNA_S-firma_F_contig10064.134.1 vs. uniprot
Match: UPI00145592FB (nucleosome-remodeling factor subunit BPTF-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI00145592FB) HSP 1 Score: 66.2 bits (160), Expect = 2.630e-11 Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 1 Query: 10 SQDAAIHESFCYACQDGGRLICCSSCVRVSHLECAQPPLAAVPDDDWVCHVC 165 S+ A ++ C AC G L+CC +C V HLEC PPL VP+DDW+C VC Sbjct: 385 SEGAITYDDHCRACHKLGDLLCCETCTAVYHLECVDPPLTEVPEDDWLCSVC 436
BLAST of mRNA_S-firma_F_contig10064.134.1 vs. uniprot
Match: A0A8B7XHH5_ACAPL (nucleosome-remodeling factor subunit BPTF-like isoform X1 n=2 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XHH5_ACAPL) HSP 1 Score: 66.2 bits (160), Expect = 2.630e-11 Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 1 Query: 10 SQDAAIHESFCYACQDGGRLICCSSCVRVSHLECAQPPLAAVPDDDWVCHVC 165 S+ A ++ C AC G L+CC +C V HLEC PPL VP+DDW+C VC Sbjct: 444 SEGAITYDDHCRACHKLGDLLCCETCTAVYHLECVDPPLTEVPEDDWLCSVC 495
BLAST of mRNA_S-firma_F_contig10064.134.1 vs. uniprot
Match: UPI0018D63C23 (nucleosome-remodeling factor subunit BPTF-like isoform X1 n=2 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D63C23) HSP 1 Score: 66.2 bits (160), Expect = 2.630e-11 Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 1 Query: 10 SQDAAIHESFCYACQDGGRLICCSSCVRVSHLECAQPPLAAVPDDDWVCHVC 165 S+ A ++ C AC G L+CC +C V HLEC PPL VP+DDW+C VC Sbjct: 442 SEGAITYDDHCRACHKLGDLLCCETCTAVYHLECVDPPLTEVPEDDWLCSVC 493
BLAST of mRNA_S-firma_F_contig10064.134.1 vs. uniprot
Match: UPI0003F0B9BA (nucleosome-remodeling factor subunit BPTF-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0B9BA) HSP 1 Score: 63.2 bits (152), Expect = 3.190e-10 Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 1 Query: 10 SQDAAIHESFCYACQDGGRLICCSSCVRVSHLECAQPPLAAVPDDDWVCHVCA 168 ++ A ++ C C G L+CC +C V HLEC PPL VP++DWVC +CA Sbjct: 307 NEGAITYDDHCRNCHKMGDLLCCETCSAVYHLECVNPPLEEVPEEDWVCEICA 359
BLAST of mRNA_S-firma_F_contig10064.134.1 vs. uniprot
Match: A0A7R9A7M3_9CRUS (Hypothetical protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R9A7M3_9CRUS) HSP 1 Score: 62.0 bits (149), Expect = 8.180e-10 Identity = 24/47 (51.06%), Postives = 29/47 (61.70%), Query Frame = 1 Query: 25 IHESFCYACQDGGRLICCSSCVRVSHLECAQPPLAAVPDDDWVCHVC 165 IHE C C G L+CC +C V HL+C PPL VPD+DW C +C Sbjct: 324 IHEDHCRVCHRLGDLLCCETCSGVYHLQCMDPPLEDVPDEDWQCQIC 370
BLAST of mRNA_S-firma_F_contig10064.134.1 vs. uniprot
Match: UPI001B8877C6 (nucleosome-remodeling factor subunit BPTF-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B8877C6) HSP 1 Score: 61.2 bits (147), Expect = 1.530e-9 Identity = 24/53 (45.28%), Postives = 32/53 (60.38%), Query Frame = 1 Query: 7 TSQDAAIHESFCYACQDGGRLICCSSCVRVSHLECAQPPLAAVPDDDWVCHVC 165 T + ++ C AC G L+CC +C V HL C PP+A VP+DDW+C VC Sbjct: 315 TDEGNIHYDDHCRACHKLGDLLCCETCSAVYHLACVDPPMAEVPEDDWLCSVC 367
BLAST of mRNA_S-firma_F_contig10064.134.1 vs. uniprot
Match: H0WSN5_OTOGA (DNA helicase n=139 Tax=Eutheria TaxID=9347 RepID=H0WSN5_OTOGA) HSP 1 Score: 60.8 bits (146), Expect = 2.090e-9 Identity = 22/46 (47.83%), Postives = 29/46 (63.04%), Query Frame = 1 Query: 28 HESFCYACQDGGRLICCSSCVRVSHLECAQPPLAAVPDDDWVCHVC 165 H FC C+DGG L+CC +C HL C PPLA +P+ +W+C C Sbjct: 414 HMEFCRVCKDGGELLCCDACPSSYHLHCLNPPLAEIPNGEWLCPRC 459 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10064.134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10064.134.1 >prot_S-firma_F_contig10064.134.1 ID=prot_S-firma_F_contig10064.134.1|Name=mRNA_S-firma_F_contig10064.134.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=56bp MGTSQDAAIHESFCYACQDGGRLICCSSCVRVSHLECAQPPLAAVPDDDWback to top mRNA from alignment at S-firma_F_contig10064:422..589+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10064.134.1 ID=mRNA_S-firma_F_contig10064.134.1|Name=mRNA_S-firma_F_contig10064.134.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=168bp|location=Sequence derived from alignment at S-firma_F_contig10064:422..589+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10064:422..589+ >mRNA_S-firma_F_contig10064.134.1 ID=mRNA_S-firma_F_contig10064.134.1|Name=mRNA_S-firma_F_contig10064.134.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=336bp|location=Sequence derived from alignment at S-firma_F_contig10064:422..589+ (Sphaerotrichia firma ET2_F female)back to top |