mRNA_S-firma_F_contig1006.126.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1006.126.1 vs. uniprot
Match: D8LC76_ECTSI (Possible CAMK/ Leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC76_ECTSI) HSP 1 Score: 810 bits (2091), Expect = 6.220e-259 Identity = 989/1438 (68.78%), Postives = 1097/1438 (76.29%), Query Frame = 1
Query: 946 DGNTTH--RTPRSDLVPAGSTTALT---LNTPRDTERLLDTVPRTAATGDLNGGIGIQAATAYGRRPSSMLGPSRRPTRSSLRASISLSLPPTIAESGPETAAQSAASNDHAIKMAQAAAEVEPEESGQPAAEDQTWAKYYEENATRQHSTPNLVSFR-LNHRRLSVELFEEGDSDDSSSSSGRSSGAIGEENAGIEDRPNKVDDTLSWQQSEEGKSRMAQLTKATVAVETPAAKMSKKYLKLFAPSNSAHDTYKVLATVHRRMNGTGWLRRGGWDSYLVRRYRAELDEGRVYGIRSKEGRVELLLMSSNNVCGRIPPTIARLESLRCIDFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKFPAKVEFWFSRISG------MAAVDFGSNDINEPFPDMHGMHQLQILMMNNNRIYDQLPESLAVACPNLFKLHLQNNKLDGEIPHNLGKLTKLEVLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERMVVNCECLQRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPLFLKASLGRNACGLKWEGNPRIVDSRHNFTSILASTQRACPKEKAPPAAPPDLQAQHTGRQSV-SAYQPIAFRLAAPPDRPPSYQSQPLVSLGYNDMSTGLCETARRDGSLSYSEHQDDNTERFGREGGVGVTEEGY-GELEDDRGSVARPWANGEDVSYFLFKVIAGNALVLIDFVIAFRLYQIGCVWGCVLVMLWRAMAGYEGILATRRLGYGCCWLPMAALGLALTWQARICFHHSCESDLFQALQQVEWHWHAMVQLATQLAAALSWWGRGEVGRWYLLASVGLKALVVGIVSMQRLDDKLLTRYREKRSGSPRIGSAPSVFRDGFLPWLRDSVWPRLILVACHFAEVCERTIPVASLTAALGDWAFFAPLALTPGMLARYVTRRARISRSRGRSGGVAASVRSALKLSLALDSAFGAGTREHVLATISTTLEAVLFEAVASKAPRQYPDTLHQCILFSIFLMLVFTWTVVVLELVXPXXXXXXXXSE-RGPARIQSPPPSPRLLMLGHFVPSRPGSASSKTPTTINVQPSASTLVIPSTVSNGSSEEPDKIEDGRQKSGGRGGKGTAVVVPIE 5214
DG H +TP L P STT L+ P +T R AA GIG Q A Y RR S M G + RP RS+ RAS+ L+LPP + E P A ++ SN A++ AAE E EE QP QTW +Y+ + RQHST +LV++R +R+LSVELF EGD D+S DT W QS+EG+S M +LTK TVAVE+PA K+S+KYLKLFAPSNSAHDTYKVLA +HRRMNGTGW RRGGWDSYLVRR RAELDEGRVYG+RSKEG VE L++SSNNVCGRIPP IARLESL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF+FP K +FWF R SG M +++ GSN++ EPFPD+ GM QLQ L+++ NR+Y L ESLA CPNL++L LQ N+L GEIPH+LG LTKLE L XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERMV+NCECLQR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPLFLKASLG NACG KW GNPRIVDSRH+F S+ A +RA + A P + QH + S S+++PI L P D P + L GY + G +S+ Q +E RE G+GV EE Y E DD +R WAN ED YFLFKV+ GNALVLID VIA RLY IGC WG LV+LWR M+G EG+LAT RLGYG CWLPMAALGLALTWQAR CFHHSCESDLFQ LQQVEW WHAM+QL+TQLAAALSWW RG+VG WYLLASVG+KALVVG+VSMQRLDD+ LT+ +E+RS +P G PSVFR FLPWLRDS WPRLILV H AEVCERTIP+ASL AALG W F APLA+ PGM ARYV RRA +SR++G GV ++V+SALK SLALDSAFGAGT HV A IS+TLE ++F+ V S APR YPD LHQ +L+ I ++ VFTW +VVLE+ P R AR RL +LG S ++ T TI+VQPS+S+L +P T S GSS+ IED ++ G RGG+ A VVP+E
Sbjct: 195 DGENDHLTQTPAPALPPVDSTTQLSGDATTLPLETTRQAAGARAVAAFDPT--GIGTQPAVRYQRRASYMPGQAMRPGRSAARASVQLALPPIVTEGEPAPANET--SNADAVRTIHEAAESEVEEPDQPMG-GQTWKEYHALHPDRQHSTADLVAYRRTRNRQLSVELFGEGD--DTSXXXXXXXXXXXXXXXXXXXXXXXXLDTPLWPQSDEGRSMMEKLTKVTVAVESPATKISRKYLKLFAPSNSAHDTYKVLAALHRRMNGTGWPRRGGWDSYLVRRSRAELDEGRVYGVRSKEGSVEYLILSSNNVCGRIPPIIARLESLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFQFPVKFQFWFLRSSGATGGSGMRSLNLGSNEVEEPFPDLQGMEQLQSLVLDQNRMYGGLTESLAETCPNLYRLSLQKNRLSGEIPHSLGMLTKLEHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERMVMNCECLQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPLFLKASLGPNACGFKWAGNPRIVDSRHHFASV-AGLRRAGGNQADRGTATPPSKDQHQQQHSTNSSFKPIPLTLRVP-DLPGCEEKSRLRGSGYQVGAKG-----------GFSQ-QLQGSEELDREIGIGVMEEDYLCEYGDDGTGASRLWANSEDFCYFLFKVVVGNALVLIDLVIAARLYLIGCKWGFFLVILWRVMSGMEGVLATHRLGYGRCWLPMAALGLALTWQARKCFHHSCESDLFQVLQQVEWRWHAMIQLSTQLAAALSWWDRGQVGYWYLLASVGMKALVVGVVSMQRLDDRRLTQDKERRSETPAAGLVPSVFRTRFLPWLRDSAWPRLILVGFHVAEVCERTIPLASLVAALGGWMFLAPLAMAPGMCARYVARRALVSRAKG--DGVVSAVKSALKTSLALDSAFGAGTPVHVAAAISSTLETIVFQTVGSNAPRGYPDELHQLLLYWISVLFVFTWVIVVLEVTIPVGRERTLLLRPRVLAR--------RLALLGSRWTSSRSRSNKPTMRTIHVQPSSSSLGLPHTPS-GSSDGAGAIEDDQRTPGWRGGRRVASVVPVE 1600 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1006.126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1006.126.1 >prot_S-firma_F_contig1006.126.1 ID=prot_S-firma_F_contig1006.126.1|Name=mRNA_S-firma_F_contig1006.126.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=1597bp MHTKEATLPASADEVTAEQQLQGGTATLSPRPQETGIASASTTASPPPGSback to top mRNA from alignment at S-firma_F_contig1006:13995..25304+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1006.126.1 ID=mRNA_S-firma_F_contig1006.126.1|Name=mRNA_S-firma_F_contig1006.126.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=11310bp|location=Sequence derived from alignment at S-firma_F_contig1006:13995..25304+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1006:13995..25304+ >mRNA_S-firma_F_contig1006.126.1 ID=mRNA_S-firma_F_contig1006.126.1|Name=mRNA_S-firma_F_contig1006.126.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=9582bp|location=Sequence derived from alignment at S-firma_F_contig1006:13995..25304+ (Sphaerotrichia firma ET2_F female)back to top |