mRNA_S-firma_F_contig1006.125.1 (mRNA) Sphaerotrichia firma ET2_F female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_S-firma_F_contig1006.125.1 vs. uniprot
Match: D8LC77_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC77_ECTSI) HSP 1 Score: 353 bits (905), Expect = 2.870e-114 Identity = 226/355 (63.66%), Postives = 255/355 (71.83%), Query Frame = -1 Query: 608 MLNLGKQENKGGIPAAGGARGASSSGRSGWEEVQEERKDEGPSLMEQMXXXXXXXXXXXXXXXXXXXLRDTKRSFGGGLKKGFLSQRAVPTPSSTARKGKKGEXXXXXXXXXXXXEGASSVVLESMPVITG-KAAPSGLEFDVSAEANS--SADLVLPEVQEAMKPSAADRLGGTSGAGG-QGWLTPELLKEIAEKPRLAAMLTDPRFTKAMQLMSTSPQDALAMFSSSPEARESFTELMSLLSKHFTTMGEAADKKAAAEEADRKRVAEGPLAQEALRRAEAGVGVAATPATTEEAATVEKVLQQPELREXXXXXXXXXXXQECGDPRALARYMQHPDFGPKLQLMANAGLISF 1660 ML LGKQ +K G G +S R W + EERK +GPSLMEQM RD K++FGGGLKKGFLS+ T S+A XXXXXX GA V S+PVITG KA+ GLEFDVSAEA+S S L+LPEVQEAMK SA++ LGG SG GG Q WLTPELL++I+EKPRLAAMLTDPRF+KAM+LMSTSP+DAL MF SS EARESFTELMSLLSKHFT MG+AAD+KAAAEEADR+RVA+GPLAQEALRRA GVGVAATPAT EE ATV+KVLQQPELRE QECG+P+ LARYM+HP+FGPKLQLMA AGLISF Sbjct: 1 MLKLGKQGSKDGA-------GVASRERLDWGALDEERKQKGPSLMEQMMAEAMAAKEVKSQEQRLEQSRDAKQTFGGGLKKGFLSRPTRTTAVSSAXXXXX-XXXXXXXRGKESTSGAPPEVEGSIPVITGRKASSGGLEFDVSAEASSTTSDSLLLPEVQEAMKHSASNPLGGASGGGGGQEWLTPELLQKISEKPRLAAMLTDPRFSKAMELMSTSPKDALGMFESSAEARESFTELMSLLSKHFTAMGDAADEKAAAEEADRRRVADGPLAQEALRRAAEGVGVAATPATAEETATVDKVLQQPELRELLMDPGMQRVLQECGEPQELARYMRHPEFGPKLQLMAKAGLISF 347
BLAST of mRNA_S-firma_F_contig1006.125.1 vs. uniprot
Match: A0A024UTJ1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UTJ1_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 2.870e-16 Identity = 90/319 (28.21%), Postives = 141/319 (44.20%), Query Frame = -1 Query: 614 EEVQEERKDEGPSLMEQMXXXXXXXXXXXXXXXXXXXLRDTKRSFGGGLKKGFLSQRAVPTPSSTARKGKKGEXXXXXXXXXXXXEGASSVVLESMPVITGKAAPSGLEFDVSAEANSSADLVLPEVQEAMKPSAADRLGGTSGAGGQGWLTPELLKEIAEKPRLAAMLTDPRFTKAMQLMSTSPQDALAMFSSSPEARESFTELMSLLSKHFTTMGEAADKKAAAEEADRKRVAEGPLAQEALRRAEAGVGVAATPATTEEAATVEKVLQQPELREXXXXXXXXXXXQECGDPRALARYMQHPDFGPKLQLMANAGLI 1570 EEV +R DE S+M++M R ++FGGGLKKGF Q P ++V +P I A L +PEV AM + W+TP +++A+ P+L + +PRFT A+Q MS++P A+ + S P F + + + +HF +G+ ++K+ P ++ ++RA + + P T +E V++VL PEL+EXXXXXXXXXXX+ C P L+ +M+ P +GPK+Q + AGL+ Sbjct: 14 EEVDNQRNDE-TSVMDEMLAVATRAKAIKDAAKRADE-RKRNQTFGGGLKKGFFRQAKPPKKE------------------------VATVAPPDIPTIRRNPAKESLH--------------IPEVHAAMNQMQNLKP--------DDWMTPAFFEKLAQNPKLCQAMQNPRFTAAIQEMSSNPTSAMLKYQSDPHFGAIFKDFLEFMGQHFEELGKIEEEKSK------------PPTKQDIQRA----ALTSMPTTPDEEVVVQRVLADPELQEXXXXXXXXXXXRACQQPGVLSTFMKDPVYGPKIQKLVRAGLV 268
BLAST of mRNA_S-firma_F_contig1006.125.1 vs. uniprot
Match: A0A835Z085_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z085_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 6.690e-16 Identity = 67/209 (32.06%), Postives = 89/209 (42.58%), Query Frame = -1 Query: 614 LVLPEVQEAMKPSAADRLGGTSGAGGQGWLTPELLKEIAEKPRLAAMLTDPRFTKAMQLMSTSPQDALAMFSSSPEARESFTELMSLLSKHFTTMGEAADKKAAAEEADRKRVAEGPLAQEALRRAEAGVGVAATPATTEEA-----------ATVEKVLQQPELREXXXXXXXXXXXQECGDPRALARYMQHPDFGPKLQLMANAGLI 1207 +VLPEVQ+AM L T WLTP LL +IA +P LAA L PRFT+A++LM P+ A+A+F +AR FTEL+ LL HF +G + A A V ++L LRE QEC P L Y HP++GPK++ +A AGL+ Sbjct: 1 VVLPEVQDAMAEQGRALLSSTDA-----WLTPALLSKIAARPALAAALQSPRFTRALELMRDDPRAAMALFGGDADARALFTELLGLLGTHFEELGAQTSQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAADADVARILADEGLRELLVDPGMQTVLQECSAPGRLRHYAAHPEWGPKIRRLAQAGLV 204
BLAST of mRNA_S-firma_F_contig1006.125.1 vs. uniprot
Match: A0A067CSB9_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CSB9_SAPPC) HSP 1 Score: 87.8 bits (216), Expect = 1.050e-15 Identity = 71/198 (35.86%), Postives = 103/198 (52.02%), Query Frame = -1 Query: 614 LVLPEVQEAMKPSAADRLGGTSGAGGQGWLTPELLKEIAEKPRLAAMLTDPRFTKAMQLMSTSPQDALAMFSSSPEARESFTELMSLLSKHFTTMGEAADKKAAAEEADRKRVAEGPLAQEALRRAEAGVGVAATPATTEEAATVEKVLQQPELREXXXXXXXXXXXQECGDPRALARYMQHPDFGPKLQLMANAGLI 1207 L LPEVQ AM+ G W+TP+ + ++A+ P+L L +PRFT A+Q +ST+P+ A+A + + + M + HF +G+ AD AA +A+ + A T +E A VE++L PEL+ XXXXXXXXXXXQ C P L RY+Q P GPK++ + AGL+ Sbjct: 90 LELPEVQAAMQ-----------GLTTNDWMTPDFMDKLAKNPKLCIALQNPRFTAAIQELSTNPEKAMAKYQHDADVSAMLRDFMQFMGAHFEALGKVADADAA--------------------KAKQRHALEAAAHTPQEQAQVERILGDPELQXXXXXXXXXXXXQRCTAPGVLLRYLQDPIVGPKIRKLEAAGLV 256
BLAST of mRNA_S-firma_F_contig1006.125.1 vs. uniprot
Match: A0A6G0XYI5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XYI5_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 7.940e-15 Identity = 59/198 (29.80%), Postives = 102/198 (51.52%), Query Frame = -1 Query: 614 LVLPEVQEAMKPSAADRLGGTSGAGGQGWLTPELLKEIAEKPRLAAMLTDPRFTKAMQLMSTSPQDALAMFSSSPEARESFTELMSLLSKHFTTMGEAADKKAAAEEADRKRVAEGPLAQEALRRAEAGVGVAATPATTEEAATVEKVLQQPELREXXXXXXXXXXXQECGDPRALARYMQHPDFGPKLQLMANAGLI 1207 L LPEVQ AM + + W+TP+L +++A+ P+L+ L +PRFT A+Q MST+P A+ + + P+ F + M+ + HF +G+ E +++R + + ++AL+ ++ +P EE A V+++L PEL + C P AL YM +GPK++ +A+AGL+ Sbjct: 96 LKLPEVQAAMSEMQNLKP--------EDWMTPDLFEKLAKDPKLSQALQNPRFTAAIQEMSTNPTAAMLKYQNDPDVGVMFKDFMNFMGHHFEHLGKI--------EEEKERKSREEIQRDALK------SMSTSP---EEDAQVQRILADPELMDILGDPAMQQVLHACQKPCALRSYMNDAIYGPKIRKLADAGLV 268
BLAST of mRNA_S-firma_F_contig1006.125.1 vs. uniprot
Match: A0A1V9ZG46_9STRA (Plectin-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZG46_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 1.160e-14 Identity = 88/286 (30.77%), Postives = 129/286 (45.10%), Query Frame = -1 Query: 614 DTKR--SFGGGLKKGFLSQ----RAVPTPSSTARKGKKGEXXXXXXXXXXXXEGASSVVLESMPVITGKAAPSGLEFDVSAEANSSADLVLPEVQEAMKPSAADRLGGTSGAGGQGWLTPELLKEIAEKPRLAAMLTDPRFTKAMQLMSTSPQDALAMFSSSPEARESFTELMSLLSKHFTTMGEAADKKAAAEEADRKRVAEGPLAQEALRRAEAGVGVAATPATTEEAATVEKVLQQPELREXXXXXXXXXXXQECGDPRALARYMQHPDFGPKLQLMANAGLI 1453 D KR SFG GLKKGF S +A TP + A + +P I K+ S LE +PEVQ AM+ G + W+TPE L ++++ P+L L +PRFT A+Q MS++P+ A+A + + P + M + HF +G+ + K + R+ +A A TP EE A V+++L PEL XXXXXXXXXX + C +P L R++ P G K++ + AGL+ Sbjct: 42 DQKRAVSFGQGLKKGFFSAAPRTKATKTPKAKA---------------------------DDIPTIRAKSTRSSLE--------------IPEVQSAMQ-----------GLQSKDWMTPEFLDKLSKDPKLCTALQNPRFTAAIQEMSSNPEKAVAKYQNDPGVAAMLKDFMQFMGAHFEQLGKDMEAK-----------------ELQARQRQALESAAQTP---EEQAQVQRILSDPELXXXXXXXXXXXXLRACQEPGVLLRHLADPVVGAKIRKLQAAGLV 255
BLAST of mRNA_S-firma_F_contig1006.125.1 vs. uniprot
Match: W4GNU8_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GNU8_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 3.940e-14 Identity = 85/281 (30.25%), Postives = 132/281 (46.98%), Query Frame = -1 Query: 614 RDTKRSFGGGLKKGFLSQRAVPTPSSTARKGKKGEXXXXXXXXXXXXEGASSVVLESMPVITGKAAPSGLEFDVSAEANSSADLVLPEVQEAMKPSAADRLGGTSGAGGQGWLTPELLKEIAEKPRLAAMLTDPRFTKAMQLMSTSPQDALAMFSSSPEARESFTELMSLLSKHFTTMGEAADKKAAAEEADRKRVAEGPLAQEALRRAEAGVGVAATPATTEEAATVEKVLQQPELREXXXXXXXXXXXQECGDPRALARYMQHPDFGPKLQLMANAGLI 1456 R ++FGGGLKKGF S P P+ KK +++V + S P I L + + E++ L LPEV +AM + + W+TP +++ P+L + +PRFT A+Q MST+P A+ + + P+ F + + + HF +G+ +K A P + R+A + + + EE A V+++L PEL XXXXXXXXX + C P L++YM FGPK+Q +A AGL+ Sbjct: 51 RKRSQTFGGGLKKGFFSN---PKPAK-----KKSV--------------STAVAISSSPDIP------TLRRNPAKESS----LHLPEVHDAMNQMQNLKP--------EDWMTPAFFEKLGRNPKLCQAMKNPRFTAAIQEMSTNPTAAILKYQNDPDFGVMFKDFLQFMGHHFEELGKIEEKTAI------------PTRDDIQRQA-----LTSMSRSPEEDAVVQRILADPELXXXXXXXXXXXVLRACQVPGVLSKYMNDKVFGPKIQKLARAGLV 274
BLAST of mRNA_S-firma_F_contig1006.125.1 vs. uniprot
Match: A0A7S2EKF9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EKF9_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 6.770e-14 Identity = 64/237 (27.00%), Postives = 109/237 (45.99%), Query Frame = -1 Query: 605 LVLPEVQEAMKPSAADRLGGTSGAGGQGWLTPELLKEIAEKPRLAAMLTDPRFTKAMQLMSTSPQDALAMFSSSPEARESFTELMSLLSKHFTTMGEAADKKAAAEE-----------------ADRKRVAEGPLAQEALRRAEAGVGVAATPATT-------------------EEAATVEKVLQQPELREXXXXXXXXXXXQECGDPRALARYMQHPDFGPKLQLMANAGLISFS 1207 L+ E+Q+AMK + + + SG+ W TP+L+++I++ PRL A L++P+F A++ + +P+ A+ F + PE + E +L +HFT +GE +K + R + GP+A++ L++ AT TT ++ V+ +L EL + QEC P + YMQHP+ GPKL+ + AGL+ S Sbjct: 90 LIFEEIQDAMKNTPSFDINNASGS----WATPDLMEKISKNPRLLAGLSNPKFAAALEALQKNPRMAMKKFQNHPEIMDYLHEFCGVLGEHFTKLGEEQEKXXXXXXXXXXXXXXXXXXXXXSISSRSKKNIGPIAEKVLKKH-------ATNQTTXXXXXXXXXXXXXXXXTARKDKEKVDSILANRELVDLLMDAEFQNIMQECSIPGRMQMYMQHPEHGPKLRKLLQAGLLQVS 315
BLAST of mRNA_S-firma_F_contig1006.125.1 vs. uniprot
Match: T0Q0K0_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q0K0_SAPDV) HSP 1 Score: 82.0 bits (201), Expect = 9.640e-14 Identity = 67/198 (33.84%), Postives = 99/198 (50.00%), Query Frame = -1 Query: 614 LVLPEVQEAMKPSAADRLGGTSGAGGQGWLTPELLKEIAEKPRLAAMLTDPRFTKAMQLMSTSPQDALAMFSSSPEARESFTELMSLLSKHFTTMGEAADKKAAAEEADRKRVAEGPLAQEALRRAEAGVGVAATPATTEEAATVEKVLQQPELREXXXXXXXXXXXQECGDPRALARYMQHPDFGPKLQLMANAGLI 1207 L PEVQ AM+ A + W+TP+ + ++A+ P+L L +PRFT A+Q +ST+P+ A+A + + + M + HF +G+AAD AA +A + A T +E A V+++L P XXXXXXXXXXXQ C P L RY+ P GPK++ + AGL+ Sbjct: 89 LEFPEVQAAMQGLATND-----------WMTPDFMDKLAKNPKLCVALQNPRFTTAIQELSTNPEKAMAKYQHDADVSTMLRDFMQFMGAHFEALGKAADADAA--------------------KASQRHALEAAAQTPQEQAQVQRILSDPXXXXXXXXXXXXXXXQRCTAPGVLLRYLHDPIVGPKIRKLQAAGLV 255
BLAST of mRNA_S-firma_F_contig1006.125.1 vs. uniprot
Match: F0Y4B4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4B4_AURAN) HSP 1 Score: 78.6 bits (192), Expect = 2.610e-11 Identity = 59/174 (33.91%), Postives = 84/174 (48.28%), Query Frame = -1 Query: 614 GQGWLTPELLKEIAEKPRLAAMLTDPRFTKAMQLMSTSPQDALAMFSSSPEARESFTELMSLLSKHFTTMGEAADKKAAAEEADRKRVAEGPLAQEALRRAEAGVGVAATPATT-EEAATVEKVLQQPELREXXXXXXXXXXXQECGDPRALARYMQHPDFGPKLQLMANAGLI 1132 G W+TPEL+K +AE+P LA + DPR A++ + P+ F PE ++ T+ ++ HF +G A AD K GPLA + + A G G A PA T EE V+ VL LR+ Q C DPR R M +PD ++ +A+AGL+ Sbjct: 174 GGDWVTPELVKAMAERPALARGMGDPRCQAALEALRKDPKAGAKQFDDDPELKQFLTDFCEVMGGHFEKLGAAXXXXXXT--ADEKEQL-GPLAAKVVEDAAKGQGPA--PAKTPEEIKQVDDVLNNAALRDLLMDPKTQLLMQRCADPREFQRAMMNPDERAIIRKLADAGLV 342 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1006.125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 12 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1006.125.1 >prot_S-firma_F_contig1006.125.1 ID=prot_S-firma_F_contig1006.125.1|Name=mRNA_S-firma_F_contig1006.125.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=329bp MCAYKISHHALNEIKPALAISCNLGPKSGCCMYRANARGSPHSCSTLCIPback to top mRNA from alignment at S-firma_F_contig1006:12029..13769+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1006.125.1 ID=mRNA_S-firma_F_contig1006.125.1|Name=mRNA_S-firma_F_contig1006.125.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1741bp|location=Sequence derived from alignment at S-firma_F_contig1006:12029..13769+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1006:12029..13769+ >mRNA_S-firma_F_contig1006.125.1 ID=mRNA_S-firma_F_contig1006.125.1|Name=mRNA_S-firma_F_contig1006.125.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1974bp|location=Sequence derived from alignment at S-firma_F_contig1006:12029..13769+ (Sphaerotrichia firma ET2_F female)back to top |