mRNA_S-firma_F_contig10056.121.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10056.121.1
Unique NamemRNA_S-firma_F_contig10056.121.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10056.121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10056contigS-firma_F_contig10056:1624..4979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size221
Cds size219
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10056.121.1prot_S-firma_F_contig10056.121.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10056 1624..4979 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815529.9414902-CDS-S-firma_F_contig10056:1623..17081622815529.9414902-CDS-S-firma_F_contig10056:1623..1708Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10056 1624..1708 +
1696949392.2926002-CDS-S-firma_F_contig10056:1623..17081696949392.2926002-CDS-S-firma_F_contig10056:1623..1708Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10056 1624..1708 +
1622815529.9570255-CDS-S-firma_F_contig10056:2023..20701622815529.9570255-CDS-S-firma_F_contig10056:2023..2070Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10056 2024..2070 +
1696949392.3140469-CDS-S-firma_F_contig10056:2023..20701696949392.3140469-CDS-S-firma_F_contig10056:2023..2070Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10056 2024..2070 +
1622815529.9701183-CDS-S-firma_F_contig10056:4892..49791622815529.9701183-CDS-S-firma_F_contig10056:4892..4979Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10056 4893..4979 +
1696949392.3322947-CDS-S-firma_F_contig10056:4892..49791696949392.3322947-CDS-S-firma_F_contig10056:4892..4979Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10056 4893..4979 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10056.121.1

>prot_S-firma_F_contig10056.121.1 ID=prot_S-firma_F_contig10056.121.1|Name=mRNA_S-firma_F_contig10056.121.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=73bp
KGSDCQACGFDTTGTIAEGVKTMVNGVEEWTNQHVDLNQCCLLEIGRECC
EHYPSDATGIISRNDLVVTGNHM
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mRNA from alignment at S-firma_F_contig10056:1624..4979+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10056.121.1 ID=mRNA_S-firma_F_contig10056.121.1|Name=mRNA_S-firma_F_contig10056.121.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3356bp|location=Sequence derived from alignment at S-firma_F_contig10056:1624..4979+ (Sphaerotrichia firma ET2_F female)
AAGGGCAGTGACTGCCAGGCCTGCGGCTTTGACACCACTGGAACCATCGC
CGAAGGCGTGAAGACCATGGTCAACGGCGTTGAGGGTAAGTGCGTCTCTC
TCTCAATTTGTAGATTGCTGGCCTTGCGTATTTTTTTGTGAATCTGGACT
ACACCTCTGTTTTTTTGTCCTGCGTGCTGCGTGCTTCACCCTGTTCAAAC
CCTCGGAATGTCGTGGGTGGTACAATACAACCATTCGATTTTCGCCATAG
CAGCCATAACCTTAACTTGCTCTGCTAGGATGTCAACACGTCTTCATCGA
TAACTAGTCGGGGAAACGCCAATAAATCTTTTTTTACTCAGGCGCTATGT
ATAACGTTTTGTTTCGTCCTCCCTTTTCTTTTTTTTTGCTGGCTCTACAG
AATGGACCAACCAGCACGTCGACCTTAACCAGTGTTGTCTACTGGAGGTG
AATGGCACCATGCCCCGGGTAATGAAGATCAACGCCGGCAACCCTCTCAT
CAACGTGAGTGCAAAATTAATTGTGTACCTTATTGTTTTTTCCTTCCTTT
TACATACATACCACCAATTCTTCGGGTGTGTTTCAGCCCCACAGGTAACG
ACGGCTGTAACTTCAAATTGATCAGCAACCGAAAACCGTGTTACGGCTGC
TTGCACACCGTCCGTTGACTGCAAAACAACATATGTTCAAAAGCTTACAT
AAAAAAAGAGCAAATACGCAGAAATGAGGAAAACCTATCATCATACGGAA
CAAAGGCCTGCAGTACCGGCAGCCACGCATATCCACCCCCACCATAATTT
GACCGATGTACGAATCGATCGACCATTCATTTTCAAATTAAAATGGAAAT
ATCATGAAGTACGTCGTATAATCAAAACGCGTTTTTCTGTTCCCTTCCCT
CACAAATGGTATTATCAGTTACAAAAGTAGTTGTTCGTTATCATCTCACC
AATTAATAAATGGTTCACGCTTCTTCATCAATATTTTGAAATTAATGTCC
AAGTCAAGCATGCATGTAGTTGGTTATAGTGTTAACAACATTCATCCCCG
CCCGATCGTTATCCGCATTCATGTGTTCAGACACCGTGTGCGGTCGGAGA
TGAATACCCTGCCCAGATCGGCAACAACATCGACAAGACGTGCACCGGCG
CGTTCAAGGTCGGTGACATCGTGTTGAGGGCGTGGACCAGCGCCGCGACG
CCAGAACACGACGGGCTCTCGTGCCACCTCAAGTGCATGATCCGCCAGCA
TCCTCTCATGGTAAGCGCAACAAATTTTGCGCAATACCGTCATCACCGGA
GTCCCCCATCCCCCCCCTCCATTTTTTCGGCCTGGCAGCAGCATCGATTC
AACGGCAAGAAAACCGTTCCCCCCCGGTATTTTAATTCTCTCGGGGTTCG
AGTTGTGCGGTGCGTTCCCCCGGAAGGATGTTAGTACTAGCATTTTCTCA
GCCGACTTTTTTGAAATCGCGAACCAATGCCAGCATCATGAGTGGCCAAA
AAATATCTACACGAAACGGCTCGTCGAGAATATCATACATACGCGCTTCT
ATCGTTCGGATCGGGCGCTGATAAATTTACTGGGCGATCTCTTCGTTTCG
TCTTGCAATTAATTGTCTGCCGTTTGAATTGTTGCTCACAAACTTTATCC
ATCGTGCGTGGTACTCTGTGTTGTGTGTGTGTGTGGACCGCCATATTTTT
TCTCATCCAGCGAGATAACTTTCCCCCCGCCCGGTGTTTCAATTTTCCCC
CGGGGTTATCAGCGTTGAAAAAAAAAACAATCGTTCCCCCCCGGTATTTT
GATTTTCCCCCGGGGAATGAATGTGATTTTAAAACAACTTCGTATCCAAC
CCCGGGGAGAAAACTGCGGTGACTACGGTCATTCTCAAAGTGGATATTTA
AGCGGTGATGTGTGTTTGTACGTGCAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACTTGCCC
TTGGGATGGACATTGATTAACGAAATTGGCGATGGCGCCTGCCTACTTCG
ATGTTTGTCTCGGCATATCTACGGCACTCCAAACCATCATTACCACTTGA
GGCAAACACTACTTCAATTCTTATACAACAACTTAAACACACAAGTTCCT
GGTGCAGAAGCTGTCCACGGCAACAACAACATTACCTTTGGAGAAGCCAT
AAATATTGGAGTATTGAATCACGAACAGGTCGTAATACTAGGACAGCCAC
CAACTCAGTACAATTCCGTACATCACTATCTTCAACTCATGTCTCACCCG
CACGCCTACGCTACTAATATTGAGATTGCTGCATTTTTCCACGTTTTCCA
CACATACGTTCATGTCTTTACAGCCCCACACCTTAACCCTCCGCCCCCTG
TCCCGATACCCAATACCTGCTACTTATATTATACACCCGAACACTTCCAG
ACGTTGCAGTACCACCCTGTTCTTCCGTAATTCTTTTCAAGCCCTGCCGC
TACCATTCGTTTTCCGTTACAGATTGATCCCAGATGAACAACACCACGTC
CACCATCCCATCCCCGTCCAACAACGCGCATCCGACACACCATCACAATC
CCCCATCCGGGTATTCTGAACTGCCTGGACCTTGCCCAAGATGCAATCGA
CTCGACGCCTTATGCCTCGCACCTTCAGTGCACAACGCCCTCAATCGTAC
TCCAATGTGTCAATACGTCCCCGCCTGTGAATGGGTCGGACGTATTCCTG
AAGAAGACAAACAATGCCAAGCTTGCTACGGCACCATCACAGCTGGAACG
CCCGCCATGTTCACCCAGTACTATGGTGAGCTCTCCTGTAGATGCCGAAT
GTAGGTATGGTAGTTACTGTTTTCTGGATTAATCTGCAATACTTTTGCTA
TTCGTTCTCTCTACCTACCTTTCCCTTCTTTCTGCACGGTTCCCTGTTTC
TCCTTTCCTTCTCCACCTCTGTACGAAGGTCCAGATCCTGCCCAATTCAC
ATCGTGCTACGCGCATTTATACCTCTCCGAGTGCTTCTTCAAAATCAGTT
CCTCTGGACGCCTCATGCACGTTCGTCTTGCTCTTGGGGACGAGGTACGT
CTGATATACCACCTCAAACCCTTTTCCATAAACGTTTTCACAATGTACTC
AGTTTTCACGGTGACGCTTCATGATCGACTTGAGCTCAATAAATATCACC
CCGTATAACCAACTATTCTCCTTCTTTGCATCTTACCCTCGCCTGCTTCT
TGCCCTCTCTTAATTTCAGATCGGACGCGAGTGCTGCGAACATTACCCCA
GTGATGCCACGGGTATCATTTCCCGCAACGACTTAGTCGTAACAGGAAAC
CACATG
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Coding sequence (CDS) from alignment at S-firma_F_contig10056:1624..4979+

>mRNA_S-firma_F_contig10056.121.1 ID=mRNA_S-firma_F_contig10056.121.1|Name=mRNA_S-firma_F_contig10056.121.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=438bp|location=Sequence derived from alignment at S-firma_F_contig10056:1624..4979+ (Sphaerotrichia firma ET2_F female)
AAGGGCAGTGACTGCCAGGCCTGCGGCTTTGACACCACTGGAACCATCGC
CGAAGGCGTGAAGACCATGGTCAACGGCGTTGAGGAAGGGCAGTGACTGC
CAGGCCTGCGGCTTTGACACCACTGGAACCATCGCCGAAGGCGTGAAGAC
CATGGTCAACGGCGTTGAGGAATGGACCAACCAGCACGTCGACCTTAACC
AGTGTTGTCTACTGGAGAATGGACCAACCAGCACGTCGACCTTAACCAGT
GTTGTCTACTGGAGATCGGACGCGAGTGCTGCGAACATTACCCCAGTGAT
GCCACGGGTATCATTTCCCGCAACGACTTAGTCGTAACAGGAAACCACAT
GATCGGACGCGAGTGCTGCGAACATTACCCCAGTGATGCCACGGGTATCA
TTTCCCGCAACGACTTAGTCGTAACAGGAAACCACATG
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