mRNA_S-firma_F_contig10056.120.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10056.120.1
Unique NamemRNA_S-firma_F_contig10056.120.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10056.120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10056contigS-firma_F_contig10056:109..1508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size808
Cds size804
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815529.8878949-CDS-S-firma_F_contig10056:108..8481622815529.8878949-CDS-S-firma_F_contig10056:108..848Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10056 109..848 +
1696949392.2606494-CDS-S-firma_F_contig10056:108..8481696949392.2606494-CDS-S-firma_F_contig10056:108..848Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10056 109..848 +
1622815529.9002216-CDS-S-firma_F_contig10056:1442..15061622815529.9002216-CDS-S-firma_F_contig10056:1442..1506Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10056 1443..1506 +
1696949392.2789428-CDS-S-firma_F_contig10056:1442..15061696949392.2789428-CDS-S-firma_F_contig10056:1442..1506Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10056 1443..1506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10056.120.1prot_S-firma_F_contig10056.120.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10056 109..1506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10056.120.1

>prot_S-firma_F_contig10056.120.1 ID=prot_S-firma_F_contig10056.120.1|Name=mRNA_S-firma_F_contig10056.120.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=268bp
QSSSQRRREGSLRCQPSTLSAPRAAPRDVRTFPCLFRRRRRSRMYAARRA
RSGRRERRGRRATAVESRRFWGVGCQLHHVISEFRRIVRMHTSFNHAYVC
VCVRDEWVGVETAGGVLACWRDCEQSRVRHPTSRQMAEARAADAVSRGRR
LHHVTFCQRLQQHSSKTSFQRHCNTPTHATSKNRKQETTPLTLRKHTTQF
RGTRAHVHTTTTRSASRRCSTKGFGGVAKDADVSRFCAATATETRARNVR
RSYSAPSKVQRLGRGPAQ
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mRNA from alignment at S-firma_F_contig10056:109..1508+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10056.120.1 ID=mRNA_S-firma_F_contig10056.120.1|Name=mRNA_S-firma_F_contig10056.120.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1400bp|location=Sequence derived from alignment at S-firma_F_contig10056:109..1508+ (Sphaerotrichia firma ET2_F female)
CAATCATCAAGTCAACGGCGGAGAGAAGGCTCGTTGCGATGCCAACCCTC
GACGCTCAGCGCTCCGCGCGCGGCGCCTCGCGATGTTCGAACTTTTCCGT
GCCTTTTTCGGCGGAGGCGACGCTCCCGAATGTACGCGGCCCGGCGCGCC
CGCTCCGGGCGCCGGGAGCGGCGGGGTCGCCGAGCCACGGCGGTCGAAAG
CCGGCGTTTTTGGGGTGTCGGGTGTCAGTTGCATCACGTAATTTCGGAAT
TTCGGAGGATTGTGCGTATGCATACGAGTTTCAACCATGCATATGTATGT
GTGTGTGTGCGTGATGAATGGGTGGGTGTCGAGACTGCCGGCGGCGTGCT
GGCGTGCTGGCGTGACTGTGAGCAGAGCCGCGTGCGTCACCCGACCAGCA
GGCAGATGGCTGAAGCGAGAGCTGCTGATGCTGTATCGCGGGGACGTCGG
TTGCATCACGTGACGTTTTGTCAACGGCTACAACAACACAGCAGTAAAAC
GTCATTTCAACGTCACTGCAACACACCCACACACGCCACCAGCAAGAACC
GAAAACAAGAAACAACACCGCTGACGCTGCGAAAGCACACCACGCAATTT
CGCGGAACGCGTGCACACGTGCACACCACAACAACGCGGAGCGCGTCACG
GAGATGCTCAACCAAAGGCTTTGGTGGAGTTGCGAAGGACGCGGATGTTT
CGCGGTTTTGTGCGGCGACAGCGACTGAGACAAGAGCAAGGTACAGGAAA
AAGCGAAGGTGTTGCACCCATATTTTGAGCGAAGTGTTTGCTTGACAGCA
GCAGCGTTTGTGTAGCAATCCTTGCAATATCCACAACCGATGATAGGTGT
GACAACAGTGTTGTGCTCCGTGGTTCGGTGTTTGGTCGCAAGAAGTCTAC
ACATCTCTTCGTCGTTGTGCGTGCACACAACGCCAACGTGGTGAAATTTG
GAATGTTTTGGCGTGTGTGTCCGGATGAATGTGTGTGTTTTCCCACCGCC
ATGCTGTAGCCAGTGCGGATGGTCGTAGTTCAGACACCGAACCGCCATAC
CCAAGGCTCTCCACGAAGAAAGCCAGCGGATGGTCGTAGTTCAGACACCG
AACCGCCATACCCAAGGCTCCACGCAGAAAGCCAGCGGCCGCTGTAGCTT
TCATTGCGATTTGAAAGAAACCCAAACCGCGAAATCAACTTGAAATTGAA
GACGGGGTGCATTTTCGGCGCGGGTGGAAAGTATTTTGCATCAACAACTG
CAACCATCGTTCACTCTCTCCGACCTTCGCATCTTCCGTGCTTTTCTTTT
GGCCGTCTATCCACGACAACAACATGCTCCGCAGGAACGTGCGCCGCAGC
TACTCCGCTCCATCAAAGGTCCAGCGCCTTGGGCGCGGACCTGCCCAGTG
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Coding sequence (CDS) from alignment at S-firma_F_contig10056:109..1508+

>mRNA_S-firma_F_contig10056.120.1 ID=mRNA_S-firma_F_contig10056.120.1|Name=mRNA_S-firma_F_contig10056.120.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1608bp|location=Sequence derived from alignment at S-firma_F_contig10056:109..1508+ (Sphaerotrichia firma ET2_F female)
CAATCATCAAGTCAACGGCGGAGAGAAGGCTCGTTGCGATGCCAACCCTC
GACGCTCAGCGCTCCGCGCGCGGCGCCTCGCGATGTTCGAACTTTTCCGT
GCCTTTTTCGGCGGAGGCGACGCTCCCGAATGTACGCGGCCCGGCGCGCC
CGCTCCGGGCGCCGGGAGCGGCGGGGTCGCCGAGCCACGGCGGTCGAAAG
CCGGCGTTTTTGGGGTGTCGGGTGTCAGTTGCATCACGTAATTTCGGAAT
TTCGGAGGATTGTGCGTATGCATACGAGTTTCAACCATGCATATGTATGT
GTGTGTGTGCGTGATGAATGGGTGGGTGTCGAGACTGCCGGCGGCGTGCT
GGCGTGCTGGCGTGACTGTGAGCAGAGCCGCGTGCGTCACCCGACCAGCA
GGCAGATGGCTGAAGCGAGAGCTGCTGATGCTGTATCGCGGGGACGTCGG
TTGCATCACGTGACGTTTTGTCAACGGCTACAACAACACAGCAGTAAAAC
GTCATTTCAACGTCACTGCAACACACCCACACACGCCACCAGCAAGAACC
GAAAACAAGAAACAACACCGCTGACGCTGCGAAAGCACACCACGCAATTT
CGCGGAACGCGTGCACACGTGCACACCACAACAACGCGGAGCGCGTCACG
GAGATGCTCAACCAAAGGCTTTGGTGGAGTTGCGAAGGACGCGGATGTTT
CGCGGTTTTGTGCGGCGACAGCGACTGAGACAAGAGCAAGCAATCATCAA
GTCAACGGCGGAGAGAAGGCTCGTTGCGATGCCAACCCTCGACGCTCAGC
GCTCCGCGCGCGGCGCCTCGCGATGTTCGAACTTTTCCGTGCCTTTTTCG
GCGGAGGCGACGCTCCCGAATGTACGCGGCCCGGCGCGCCCGCTCCGGGC
GCCGGGAGCGGCGGGGTCGCCGAGCCACGGCGGTCGAAAGCCGGCGTTTT
TGGGGTGTCGGGTGTCAGTTGCATCACGTAATTTCGGAATTTCGGAGGAT
TGTGCGTATGCATACGAGTTTCAACCATGCATATGTATGTGTGTGTGTGC
GTGATGAATGGGTGGGTGTCGAGACTGCCGGCGGCGTGCTGGCGTGCTGG
CGTGACTGTGAGCAGAGCCGCGTGCGTCACCCGACCAGCAGGCAGATGGC
TGAAGCGAGAGCTGCTGATGCTGTATCGCGGGGACGTCGGTTGCATCACG
TGACGTTTTGTCAACGGCTACAACAACACAGCAGTAAAACGTCATTTCAA
CGTCACTGCAACACACCCACACACGCCACCAGCAAGAACCGAAAACAAGA
AACAACACCGCTGACGCTGCGAAAGCACACCACGCAATTTCGCGGAACGC
GTGCACACGTGCACACCACAACAACGCGGAGCGCGTCACGGAGATGCTCA
ACCAAAGGCTTTGGTGGAGTTGCGAAGGACGCGGATGTTTCGCGGTTTTG
TGCGGCGACAGCGACTGAGACAAGAGCAAGGAACGTGCGCCGCAGCTACT
CCGCTCCATCAAAGGTCCAGCGCCTTGGGCGCGGACCTGCCCAGGAACGT
GCGCCGCAGCTACTCCGCTCCATCAAAGGTCCAGCGCCTTGGGCGCGGAC
CTGCCCAG
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