mRNA_S-firma_F_contig10053.116.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10053.116.1
Unique NamemRNA_S-firma_F_contig10053.116.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10053.116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10053contigS-firma_F_contig10053:486..881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size396
Cds size396
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815529.6019366-CDS-S-firma_F_contig10053:485..8811622815529.6019366-CDS-S-firma_F_contig10053:485..881Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10053 486..881 +
1696949392.104632-CDS-S-firma_F_contig10053:485..8811696949392.104632-CDS-S-firma_F_contig10053:485..881Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10053 486..881 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10053.116.1prot_S-firma_F_contig10053.116.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10053 486..881 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10053.116.1

>prot_S-firma_F_contig10053.116.1 ID=prot_S-firma_F_contig10053.116.1|Name=mRNA_S-firma_F_contig10053.116.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=132bp
MRHTPIPLPYKRFLFPCLPAFHSIKILDPHAIVRCGRRQRNPQLAPLSYT
KQRWSCMAQSSNPDLTDQTYPAACTKTLCHLPLSQPPVTFVLVVSRRRPH
RQQATARHPTLTYIAQRCVLASRRPSAAALHR
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mRNA from alignment at S-firma_F_contig10053:486..881+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10053.116.1 ID=mRNA_S-firma_F_contig10053.116.1|Name=mRNA_S-firma_F_contig10053.116.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=396bp|location=Sequence derived from alignment at S-firma_F_contig10053:486..881+ (Sphaerotrichia firma ET2_F female)
ATGCGACATACTCCCATCCCTCTTCCATACAAGCGCTTCCTCTTTCCCTG
CCTTCCCGCTTTTCACTCCATCAAAATTCTTGACCCGCACGCAATCGTGC
GGTGCGGGAGGAGGCAAAGAAACCCGCAACTCGCCCCTCTATCATACACA
AAACAGCGCTGGTCGTGCATGGCACAGAGCAGCAACCCAGATCTGACCGA
TCAAACATACCCCGCAGCGTGTACAAAGACCCTCTGTCACCTTCCTCTCT
CGCAACCGCCGGTCACCTTTGTACTCGTAGTTTCAAGAAGACGCCCTCAT
CGACAACAGGCAACCGCAAGACACCCAACTCTCACATACATCGCGCAGCG
CTGTGTACTTGCTTCCCGCCGCCCTTCTGCAGCAGCACTACATAGA
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Coding sequence (CDS) from alignment at S-firma_F_contig10053:486..881+

>mRNA_S-firma_F_contig10053.116.1 ID=mRNA_S-firma_F_contig10053.116.1|Name=mRNA_S-firma_F_contig10053.116.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=792bp|location=Sequence derived from alignment at S-firma_F_contig10053:486..881+ (Sphaerotrichia firma ET2_F female)
ATGCGACATACTCCCATCCCTCTTCCATACAAGCGCTTCCTCTTTCCCTG
CCTTCCCGCTTTTCACTCCATCAAAATTCTTGACCCGCACGCAATCGTGC
GGTGCGGGAGGAGGCAAAGAAACCCGCAACTCGCCCCTCTATCATACACA
AAACAGCGCTGGTCGTGCATGGCACAGAGCAGCAACCCAGATCTGACCGA
TCAAACATACCCCGCAGCGTGTACAAAGACCCTCTGTCACCTTCCTCTCT
CGCAACCGCCGGTCACCTTTGTACTCGTAGTTTCAAGAAGACGCCCTCAT
CGACAACAGGCAACCGCAAGACACCCAACTCTCACATACATCGCGCAGCG
CTGTGTACTTGCTTCCCGCCGCCCTTCTGCAGCAGCACTACATAGAATGC
GACATACTCCCATCCCTCTTCCATACAAGCGCTTCCTCTTTCCCTGCCTT
CCCGCTTTTCACTCCATCAAAATTCTTGACCCGCACGCAATCGTGCGGTG
CGGGAGGAGGCAAAGAAACCCGCAACTCGCCCCTCTATCATACACAAAAC
AGCGCTGGTCGTGCATGGCACAGAGCAGCAACCCAGATCTGACCGATCAA
ACATACCCCGCAGCGTGTACAAAGACCCTCTGTCACCTTCCTCTCTCGCA
ACCGCCGGTCACCTTTGTACTCGTAGTTTCAAGAAGACGCCCTCATCGAC
AACAGGCAACCGCAAGACACCCAACTCTCACATACATCGCGCAGCGCTGT
GTACTTGCTTCCCGCCGCCCTTCTGCAGCAGCACTACATAGA
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