mRNA_S-firma_F_contig1005.113.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1005.113.1 vs. uniprot
Match: D8LTR6_ECTSI (Developmental regulator FlbA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTR6_ECTSI) HSP 1 Score: 179 bits (455), Expect = 6.730e-49 Identity = 110/286 (38.46%), Postives = 161/286 (56.29%), Query Frame = 2
Query: 20 GVTRTANLVTTIRAWLVLAVGLSAACFGCLLRHVHDSTNLSRDIGQIGRVFAGLLCVYAVVQLTPMSPLIYKYAHIALLTAIHPPLVYIINIRPVREILRAVPGYRHNVFGAML-APAPRNFTDDIEQQAGGQGPGRA------VLVDSNRLSVIMSLPPLRAAFGEFCRRALCSESFEFLVEVSKYRT-IASSSGDGDDEISQNFARYLVIVMCFIKHDSHLEINIGADIKHDIMDYIRFEAYLSLERERRNEIFTRAEEEICKLLTLNLLDKFLASAEYTVALD 853
GV+RT ++ T+ + ++ G L V D ++S DI +G + + CV+A + MSP+ YKY I L+ HPP+V++ NIRPVRE+ R +P R + L +P R T +I + V +D NRL+ IM+ PLR AFGEFCRR+LC ESF+FLV+V +++ IA S+ + ++ F YL +V +IK SH E+NI + K IM +++F AY +L+ E R +IF AE EI +L NLL+KFL S YT +D
Sbjct: 149 GVSRTGGVLATLELFSGSTTVVAGVLVGGRLNKVDDLLHMSTDIRVVGMLLLLMSCVHAGLHYVSMSPMEYKYYTIVLMALSHPPIVWLTNIRPVREVERNIPARRRSRKDFQLPSPYRRWSTKNIRVGVAADENNNSLPWNGEVYLDDNRLTSIMNFQPLREAFGEFCRRSLCGESFQFLVDVEEFKDLIADSAAEETEKSFGGFGGYLAVVNDYIKDGSHSEVNIASTTKRSIMQHMKFTAYAALKLEDRKDIFGPAEREIKIVLADNLLNKFLVSDPYTKVVD 434
BLAST of mRNA_S-firma_F_contig1005.113.1 vs. uniprot
Match: A0A6H5KX00_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX00_9PHAE) HSP 1 Score: 177 bits (448), Expect = 7.080e-48 Identity = 110/287 (38.33%), Postives = 159/287 (55.40%), Query Frame = 2
Query: 20 GVTRTANLVTTIRAWLVLAVGLSAACFGCLLRHVHDSTNLSRDIGQIGRVFAGLLCVYAVVQLTPMSPLIYKYAHIALLTAIHPPLVYIINIRPVREILRAVPGYRHNVFGAML-APAPRNFTDDIEQQAGGQGP-------GRAVLVDSNRLSVIMSLPPLRAAFGEFCRRALCSESFEFLVEVSKYRT-IASSSGDGDDEISQNFARYLVIVMCFIKHDSHLEINIGADIKHDIMDYIRFEAYLSLERERRNEIFTRAEEEICKLLTLNLLDKFLASAEYTVALD 853
G++RT ++ T+ + ++ G L V D ++S DI +G + + CV+ + MSP Y+Y I L +HPP+V++INIRPV E+ R +P R + L +P R T +I G A L D NRL+ IM+ PLR AFGEFCRR+LC ESF+FLV+V +++ IA S+ + ++ F YL IV +IK SH E+NI + K IM Y++F AY +L+ E R ++F AE EI +L NLL+KFL S YT +D
Sbjct: 149 GLSRTVGVLVTLELFTGSTTVVAGVLLGGRLNKVDDLLHMSTDIRVVGTILLLMTCVHKGLPYLSMSPTEYQYCKITLTALLHPPIVWLINIRPVLEVGRNIPARRRSRKSFHLPSPFRRRSTKNIRVGVAADEDINTLPWNGEAYLND-NRLTSIMNFQPLREAFGEFCRRSLCGESFQFLVDVEEFKDLIADSAAETSEKSFGGFGGYLAIVNDYIKDGSHSEVNIASTTKRSIMQYMKFAAYAALQLEERKDLFGPAEREIKIVLADNLLNKFLVSDPYTKVVD 434
BLAST of mRNA_S-firma_F_contig1005.113.1 vs. uniprot
Match: A0A6H5JIZ3_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIZ3_9PHAE) HSP 1 Score: 169 bits (429), Expect = 4.860e-45 Identity = 112/318 (35.22%), Postives = 177/318 (55.66%), Query Frame = 2
Query: 2 LAAWTQGVTRTANLVTTIRAWLVLAVGLSAACFGCLLRHVHDSTNLSRDIGQIGRVFAGLLCVYAVVQLTPMSPLIYKYAHIALLTAIHPPLVYIINIRPVREILRAVPGYRHNV---FGAMLAPAPRN------------FTDDIEQQAGGQGPGRAVLVDSNRLSVIMSLPPLRAAFGEFCRRALCSESFEFLVEVSKYRTI---------ASSSGDGDDEI---SQNFARYLVIVMCFIKHDSHLEINIGADIKHDIMDYIRFEAYLSLERERRNEIFTRAEEEICKLLTLNLLDKFLASAEYTVALDHGNG*AR 874
LAA QG R A ++T + ++ C G L+ +HD +N+ RDI +G + L V+ +++ S L +KY + +T HPP+V+I+NIRP++E+L P R+++ +LA + R T D+ Q R V+SNRL+ IM+ PLR AFGEFC+++LCSESF+FL++ S++R + A+ S + ++E + +V +IK + EINIG+D K DIM+ + EA+ SL+++ R IF +AE EI ++L NL+ +FLASA+Y A+D G+G R
Sbjct: 134 LAAAMQGTKRVAVVMTNLAPLSAFVTLMAVVCLGRQLKRIHDLSNMGRDIRLVGIILLICLPVFTAIRVLWGSILAFKYFFVIFITISHPPIVWILNIRPIQEVLHHAP--RNSIPKGVQVLLALSSRRRGGITSTIVGEAVTPDVSQNPSRHS--RESYVESNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEGPVDGDANGSAEEENEAPTHTSGLGDVATMVNEYIKDGAPSEINIGSDTKRDIMELAKVEAFASLDQDARLLIFVQAEREIRRILEDNLMARFLASAQYKRAVD-GDGHGR 446
BLAST of mRNA_S-firma_F_contig1005.113.1 vs. uniprot
Match: D7G0P5_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P5_ECTSI) HSP 1 Score: 161 bits (407), Expect = 2.550e-43 Identity = 103/290 (35.52%), Postives = 162/290 (55.86%), Query Frame = 2
Query: 86 SAACFGCLLRHVHDSTNLSRDIGQIGRVFAGLLCVYAVVQLTPMSPLIYKYAHIALLTAIHPPLVYIINIRPVREILRAVPGYRHNV---------------FGAMLAPAPRNFTDDIEQQAGGQGPGRAVLVDSNRLSVIMSLPPLRAAFGEFCRRALCSESFEFLVEVSKYRTI---------ASSSGDGDDEI---SQNFARYLVIVMCFIKHDSHLEINIGADIKHDIMDYIRFEAYLSLERERRNEIFTRAEEEICKLLTLNLLDKFLASAEYTVALDHGNG*AR 874
+ C G L+ +HD +N+ RDI +G + + V+ +Q+ P+S L +KY + +T HP +V+I+NIRP++E+L P R+++ G+ A T D+ Q G R VDSNRL+ IM+ PLR AFGEFC+++ CSE FL++ S++R + A+ S + ++E + +V +IK + EINIG+D KHDIM+ + EA+ SL+++ R IF +AE EI ++L NL+ +FLASA+Y A+D G+G R
Sbjct: 15 AVVCLGRQLKRIHDLSNMGRDIRLVGIILLICVPVFTAIQVLPLSTLAFKYFSVVSMTLSHPAIVWILNIRPIQEVLHHAP--RNSIPKGVQMLLALSSRRRGGSSSAIGGEAVTTDVTQNPSQHG--RESYVDSNRLAGIMNYLPLREAFGEFCQKSFCSE---FLLDASEFRGVIVEGPVEGDANGSAEEENEAPTRTSGLGDVAAMVNEYIKDGAPSEINIGSDTKHDIMELAKVEAFTSLDQDARRLIFGKAEREIRRILEDNLMARFLASAQYKRAVD-GDGHGR 296
BLAST of mRNA_S-firma_F_contig1005.113.1 vs. uniprot
Match: D7G3E2_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E2_ECTSI) HSP 1 Score: 117 bits (293), Expect = 8.620e-28 Identity = 72/176 (40.91%), Postives = 106/176 (60.23%), Query Frame = 2
Query: 383 TDDIEQQAGGQGPGRAVLVDSNRLSVIMSLPPLRAAFGEFCRRALCSESFEFLVEVSKYRTI---------ASSSGDGDDEI---SQNFARYLVIVMCFIKHDSHLEINIGADIKHDIMDYIRFEAYLSLERERRNEIFTRAEEEICKLLTLNLLDKFLASAEYTVALDHGNG*AR 874
T D+ Q + R VDSNRL+ IM+ PLR AFGEFC+++LC ESF+FL + S++R + A+ S + + E + +V +IK + EINIG+DIKHDIM+ + E + SL+++ R IF +AE EI ++L NL+ +FLASA+Y A+D G+G R
Sbjct: 23 TSDVTQNPSQRS--RESYVDSNRLAGIMNYLPLREAFGEFCQKSLCGESFQFLRDASEFRGVIVEGPVDGDANGSAEEEQEAPVHTSGLGDVAAMVNEYIKDGAPSEINIGSDIKHDIMELAKVETFASLDQDARLLIFVKAEREIRRILEDNLMARFLASAQYKRAVD-GDGDGR 195
BLAST of mRNA_S-firma_F_contig1005.113.1 vs. uniprot
Match: A0A6H5J8W8_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8W8_9PHAE) HSP 1 Score: 120 bits (302), Expect = 1.210e-27 Identity = 83/218 (38.07%), Postives = 122/218 (55.96%), Query Frame = 2
Query: 290 NIRPVREIL-----RAVPGYRHNVFGAMLAPAPRN--------FTDDIEQQAGGQGPGRAVLVDSNRLSVIMSLPPLRAAFGEFCRRALCSESFEFLVEVSKYR-TIASSSGDGD-----DEISQNFARYL----VIVMCFIKHDSHLEINIGADIKHDIMDYIRFEAYLSLERERRNEIFTRAEEEICKLLTLNLLDKFLASAEYTVALDHGNG*AR 874
NIRP++E+L +P + R+ T D+ Q R +DSNRL+ IM+ PLR AFGEFC+++LCSESF+FL++ S++R I DGD +E ++ R L +V +IK + EINIG+D KHDIM+ + EA+ SL+++ R IF +AE EI ++L NL+ +FL SA+Y A+D G+G R
Sbjct: 129 NIRPIQEVLYHARRNGIPKGVQMLLALSSRARRRSTSTIGGEEVTSDVTQNPSQHS--REPYIDSNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEGPVDGDANGSAEEENEAPTRRLGDVATMVNEYIKDGAPSEINIGSDTKHDIMELAKAEAFASLDQDARKLIFVKAEREIKRILEDNLMARFLVSAQYKRAVD-GDGDGR 343
BLAST of mRNA_S-firma_F_contig1005.113.1 vs. uniprot
Match: D7G0P6_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P6_ECTSI) HSP 1 Score: 116 bits (291), Expect = 7.290e-26 Identity = 86/237 (36.29%), Postives = 127/237 (53.59%), Query Frame = 2
Query: 290 NIRPVREILRAVPGYRHNV---FGAMLAPAPRN------------FTDDIEQQAGGQGPGRAVLVDSNRLSVIMSLPPLRAAFGEFCRRALCSESFEFLVEVSKYRTI---------ASSSGDGDDEI---SQNFARYLVIVMCFIKHDSHLEINIGADIKHDIMDYIRFEAYLSLERER---------------RNEIFTRAEEEICKLLTLNLLDKFLASAEYTVALDHGNG*AR 874
NIRP++E+L P R+++ +LA + R T D+ Q G R VDSNRL+ IM+ PLR AFGEFC+++LCSESF+FL++ S++R + A+ S + ++E + +V +IK + EINIG+D KH IM+ + EA+ SLE+ R R IF +AE EI ++L NL+ +FLASA+Y A+D G+G R
Sbjct: 144 NIRPIQEVLHHAP--RNSIPKGVQMLLALSSRRRGGSSSPIGGEAVTTDVTQNPSQHG--RESYVDSNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEGPVEGDANGSAEEENEAPAHTSGLGDVAAMVNEYIKDGAPSEINIGSDTKHAIMELAKVEAFASLEQGRQGGRLEAFALLDQDARKLIFVKAEREIRRILEDNLMARFLASAQYKRAVD-GDGDGR 375
BLAST of mRNA_S-firma_F_contig1005.113.1 vs. uniprot
Match: A0A6H5K562_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K562_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 3.920e-14 Identity = 40/96 (41.67%), Postives = 64/96 (66.67%), Query Frame = 2
Query: 449 RLSVIMSLPPLRAAFGEFCRRALCSESFEFLVEVSKYRTIASSSGDGDDEISQNFARYLVIVMCFIKHDSHLEINIGADIKHDIMDYIRFEAYLSL 736
RL+ IM PL AFGEFCR+ALC ESF+FLV+VSK+++ ++ G ++ ++ ++VIV +I+ +S+ E+NI + K +I+ + AY SL
Sbjct: 18 RLATIMGFLPLEHAFGEFCRKALCHESFQFLVDVSKFKSSVHAAHQGGND---SYEEFIVIVDEYIEDNSNFEVNIDSRTKKEILGFGDRSAYASL 110
BLAST of mRNA_S-firma_F_contig1005.113.1 vs. uniprot
Match: A0A6H5K976_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K976_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 3.550e-13 Identity = 83/283 (29.33%), Postives = 127/283 (44.88%), Query Frame = 2
Query: 41 LVTTIRAWLVLAVGLSAACFGCLLRHVHDSTNLSRDIGQIGRVFAGLLCVYAVVQLTPMSPL-IYKYAHIALLTAIHPPLVYIINIRPVREILRAVPGYRHNVFG-AMLAPAPRNFT-------DDIEQQAGGQGPGRAVLVD---SNRLSVIMSLPPLRAAFGEFCRRALCSESFEFLVEVSKYRTIASSSGDGDDEISQNFARYLVIVMCFIKHDSHLEINIGADIKHDIMDYIRFEAYLSLERERRNEIFTRAEEEICKLLTLNLLDKFLASAEYTVALD 853
++ I ++L +G S G L R D ++S +I +G FA L + + PM P + + I LT V+I NI+PVR++L+ + N G A L P T D + + P + ++L I+ PPL AFGEFCR+ALCSES FL + +S D I FAR+ IV +I+ S E+NI + K I+ ++ L + I A +EI K+L NL +KF ++ ++ D
Sbjct: 206 MIAVIAVDMLLTIGASLMLVGKLAR-TKDMFDMSVEIRSVGG-FALLALGELMGIVIPMVPATVLNFYLILFLTTRFGTAVWITNIQPVRKVLQRRADHPINAGGIASLFPYVPWTTRSGAVAIDVMNESKVFTKPSSSKFTSVKLDDKLEEILRFPPLLEAFGEFCRKALCSESLMFLTAGKDFHESLDASDADYDTI---FARFNEIVDQYIRDGSSFEVNIESKTKAQILSRTSMSSFKELPLDDAVCILDLAVKEIGKMLQENLYNKFRSTEQFKEIKD 483
BLAST of mRNA_S-firma_F_contig1005.113.1 vs. uniprot
Match: A0A6H5JDD6_9PHAE (RGS domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDD6_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 1.380e-9 Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 2
Query: 452 LSVIMSLPPLRAAFGEFCRRALCSESFEFLVEVSK-----YRTIASSSGDGDDEISQNFARYLVIVMCFIKHDSHLEINIGADIKHDIMDYIRFEAYLSLER 742
L+ IM PPLR AFG + R+ LCSESF+FLV+VS+ YRT G D++ + + VIV +I +S+ EINI + K + + AY SL++
Sbjct: 9 LAAIMEFPPLRQAFGGYFRKPLCSESFQFLVDVSEFSSLVYRTSGCDERGGKDDLDE----FNVIVGEYITDNSNSEINIDSVTKKKLTGFCERSAYASLDQ 106 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1005.113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1005.113.1 >prot_S-firma_F_contig1005.113.1 ID=prot_S-firma_F_contig1005.113.1|Name=mRNA_S-firma_F_contig1005.113.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=218bp MSPLIYKYAHIALLTAIHPPLVYIINIRPVREILRAVPGYRHNVFGAMLAback to top mRNA from alignment at S-firma_F_contig1005:12530..15615- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1005.113.1 ID=mRNA_S-firma_F_contig1005.113.1|Name=mRNA_S-firma_F_contig1005.113.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3086bp|location=Sequence derived from alignment at S-firma_F_contig1005:12530..15615- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1005:12530..15615- >mRNA_S-firma_F_contig1005.113.1 ID=mRNA_S-firma_F_contig1005.113.1|Name=mRNA_S-firma_F_contig1005.113.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1308bp|location=Sequence derived from alignment at S-firma_F_contig1005:12530..15615- (Sphaerotrichia firma ET2_F female)back to top |