mRNA_S-firma_F_contig1005.113.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1005.113.1
Unique NamemRNA_S-firma_F_contig1005.113.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig1005.113.1 vs. uniprot
Match: D8LTR6_ECTSI (Developmental regulator FlbA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTR6_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 6.730e-49
Identity = 110/286 (38.46%), Postives = 161/286 (56.29%), Query Frame = 2
Query:   20 GVTRTANLVTTIRAWLVLAVGLSAACFGCLLRHVHDSTNLSRDIGQIGRVFAGLLCVYAVVQLTPMSPLIYKYAHIALLTAIHPPLVYIINIRPVREILRAVPGYRHNVFGAML-APAPRNFTDDIEQQAGGQGPGRA------VLVDSNRLSVIMSLPPLRAAFGEFCRRALCSESFEFLVEVSKYRT-IASSSGDGDDEISQNFARYLVIVMCFIKHDSHLEINIGADIKHDIMDYIRFEAYLSLERERRNEIFTRAEEEICKLLTLNLLDKFLASAEYTVALD 853
            GV+RT  ++ T+  +      ++    G  L  V D  ++S DI  +G +   + CV+A +    MSP+ YKY  I L+   HPP+V++ NIRPVRE+ R +P  R +     L +P  R  T +I           +      V +D NRL+ IM+  PLR AFGEFCRR+LC ESF+FLV+V +++  IA S+ +  ++    F  YL +V  +IK  SH E+NI +  K  IM +++F AY +L+ E R +IF  AE EI  +L  NLL+KFL S  YT  +D
Sbjct:  149 GVSRTGGVLATLELFSGSTTVVAGVLVGGRLNKVDDLLHMSTDIRVVGMLLLLMSCVHAGLHYVSMSPMEYKYYTIVLMALSHPPIVWLTNIRPVREVERNIPARRRSRKDFQLPSPYRRWSTKNIRVGVAADENNNSLPWNGEVYLDDNRLTSIMNFQPLREAFGEFCRRSLCGESFQFLVDVEEFKDLIADSAAEETEKSFGGFGGYLAVVNDYIKDGSHSEVNIASTTKRSIMQHMKFTAYAALKLEDRKDIFGPAEREIKIVLADNLLNKFLVSDPYTKVVD 434          
BLAST of mRNA_S-firma_F_contig1005.113.1 vs. uniprot
Match: A0A6H5KX00_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX00_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 7.080e-48
Identity = 110/287 (38.33%), Postives = 159/287 (55.40%), Query Frame = 2
Query:   20 GVTRTANLVTTIRAWLVLAVGLSAACFGCLLRHVHDSTNLSRDIGQIGRVFAGLLCVYAVVQLTPMSPLIYKYAHIALLTAIHPPLVYIINIRPVREILRAVPGYRHNVFGAML-APAPRNFTDDIEQQAGGQGP-------GRAVLVDSNRLSVIMSLPPLRAAFGEFCRRALCSESFEFLVEVSKYRT-IASSSGDGDDEISQNFARYLVIVMCFIKHDSHLEINIGADIKHDIMDYIRFEAYLSLERERRNEIFTRAEEEICKLLTLNLLDKFLASAEYTVALD 853
            G++RT  ++ T+  +      ++    G  L  V D  ++S DI  +G +   + CV+  +    MSP  Y+Y  I L   +HPP+V++INIRPV E+ R +P  R +     L +P  R  T +I                G A L D NRL+ IM+  PLR AFGEFCRR+LC ESF+FLV+V +++  IA S+ +  ++    F  YL IV  +IK  SH E+NI +  K  IM Y++F AY +L+ E R ++F  AE EI  +L  NLL+KFL S  YT  +D
Sbjct:  149 GLSRTVGVLVTLELFTGSTTVVAGVLLGGRLNKVDDLLHMSTDIRVVGTILLLMTCVHKGLPYLSMSPTEYQYCKITLTALLHPPIVWLINIRPVLEVGRNIPARRRSRKSFHLPSPFRRRSTKNIRVGVAADEDINTLPWNGEAYLND-NRLTSIMNFQPLREAFGEFCRRSLCGESFQFLVDVEEFKDLIADSAAETSEKSFGGFGGYLAIVNDYIKDGSHSEVNIASTTKRSIMQYMKFAAYAALQLEERKDLFGPAEREIKIVLADNLLNKFLVSDPYTKVVD 434          
BLAST of mRNA_S-firma_F_contig1005.113.1 vs. uniprot
Match: A0A6H5JIZ3_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIZ3_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 4.860e-45
Identity = 112/318 (35.22%), Postives = 177/318 (55.66%), Query Frame = 2
Query:    2 LAAWTQGVTRTANLVTTIRAWLVLAVGLSAACFGCLLRHVHDSTNLSRDIGQIGRVFAGLLCVYAVVQLTPMSPLIYKYAHIALLTAIHPPLVYIINIRPVREILRAVPGYRHNV---FGAMLAPAPRN------------FTDDIEQQAGGQGPGRAVLVDSNRLSVIMSLPPLRAAFGEFCRRALCSESFEFLVEVSKYRTI---------ASSSGDGDDEI---SQNFARYLVIVMCFIKHDSHLEINIGADIKHDIMDYIRFEAYLSLERERRNEIFTRAEEEICKLLTLNLLDKFLASAEYTVALDHGNG*AR 874
            LAA  QG  R A ++T +         ++  C G  L+ +HD +N+ RDI  +G +    L V+  +++   S L +KY  +  +T  HPP+V+I+NIRP++E+L   P  R+++      +LA + R              T D+ Q        R   V+SNRL+ IM+  PLR AFGEFC+++LCSESF+FL++ S++R +         A+ S + ++E    +        +V  +IK  +  EINIG+D K DIM+  + EA+ SL+++ R  IF +AE EI ++L  NL+ +FLASA+Y  A+D G+G  R
Sbjct:  134 LAAAMQGTKRVAVVMTNLAPLSAFVTLMAVVCLGRQLKRIHDLSNMGRDIRLVGIILLICLPVFTAIRVLWGSILAFKYFFVIFITISHPPIVWILNIRPIQEVLHHAP--RNSIPKGVQVLLALSSRRRGGITSTIVGEAVTPDVSQNPSRHS--RESYVESNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEGPVDGDANGSAEEENEAPTHTSGLGDVATMVNEYIKDGAPSEINIGSDTKRDIMELAKVEAFASLDQDARLLIFVQAEREIRRILEDNLMARFLASAQYKRAVD-GDGHGR 446          
BLAST of mRNA_S-firma_F_contig1005.113.1 vs. uniprot
Match: D7G0P5_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P5_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 2.550e-43
Identity = 103/290 (35.52%), Postives = 162/290 (55.86%), Query Frame = 2
Query:   86 SAACFGCLLRHVHDSTNLSRDIGQIGRVFAGLLCVYAVVQLTPMSPLIYKYAHIALLTAIHPPLVYIINIRPVREILRAVPGYRHNV---------------FGAMLAPAPRNFTDDIEQQAGGQGPGRAVLVDSNRLSVIMSLPPLRAAFGEFCRRALCSESFEFLVEVSKYRTI---------ASSSGDGDDEI---SQNFARYLVIVMCFIKHDSHLEINIGADIKHDIMDYIRFEAYLSLERERRNEIFTRAEEEICKLLTLNLLDKFLASAEYTVALDHGNG*AR 874
            +  C G  L+ +HD +N+ RDI  +G +    + V+  +Q+ P+S L +KY  +  +T  HP +V+I+NIRP++E+L   P  R+++                G+  A      T D+ Q     G  R   VDSNRL+ IM+  PLR AFGEFC+++ CSE   FL++ S++R +         A+ S + ++E    +        +V  +IK  +  EINIG+D KHDIM+  + EA+ SL+++ R  IF +AE EI ++L  NL+ +FLASA+Y  A+D G+G  R
Sbjct:   15 AVVCLGRQLKRIHDLSNMGRDIRLVGIILLICVPVFTAIQVLPLSTLAFKYFSVVSMTLSHPAIVWILNIRPIQEVLHHAP--RNSIPKGVQMLLALSSRRRGGSSSAIGGEAVTTDVTQNPSQHG--RESYVDSNRLAGIMNYLPLREAFGEFCQKSFCSE---FLLDASEFRGVIVEGPVEGDANGSAEEENEAPTRTSGLGDVAAMVNEYIKDGAPSEINIGSDTKHDIMELAKVEAFTSLDQDARRLIFGKAEREIRRILEDNLMARFLASAQYKRAVD-GDGHGR 296          
BLAST of mRNA_S-firma_F_contig1005.113.1 vs. uniprot
Match: D7G3E2_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E2_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 8.620e-28
Identity = 72/176 (40.91%), Postives = 106/176 (60.23%), Query Frame = 2
Query:  383 TDDIEQQAGGQGPGRAVLVDSNRLSVIMSLPPLRAAFGEFCRRALCSESFEFLVEVSKYRTI---------ASSSGDGDDEI---SQNFARYLVIVMCFIKHDSHLEINIGADIKHDIMDYIRFEAYLSLERERRNEIFTRAEEEICKLLTLNLLDKFLASAEYTVALDHGNG*AR 874
            T D+ Q    +   R   VDSNRL+ IM+  PLR AFGEFC+++LC ESF+FL + S++R +         A+ S + + E    +        +V  +IK  +  EINIG+DIKHDIM+  + E + SL+++ R  IF +AE EI ++L  NL+ +FLASA+Y  A+D G+G  R
Sbjct:   23 TSDVTQNPSQRS--RESYVDSNRLAGIMNYLPLREAFGEFCQKSLCGESFQFLRDASEFRGVIVEGPVDGDANGSAEEEQEAPVHTSGLGDVAAMVNEYIKDGAPSEINIGSDIKHDIMELAKVETFASLDQDARLLIFVKAEREIRRILEDNLMARFLASAQYKRAVD-GDGDGR 195          
BLAST of mRNA_S-firma_F_contig1005.113.1 vs. uniprot
Match: A0A6H5J8W8_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8W8_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.210e-27
Identity = 83/218 (38.07%), Postives = 122/218 (55.96%), Query Frame = 2
Query:  290 NIRPVREIL-----RAVPGYRHNVFGAMLAPAPRN--------FTDDIEQQAGGQGPGRAVLVDSNRLSVIMSLPPLRAAFGEFCRRALCSESFEFLVEVSKYR-TIASSSGDGD-----DEISQNFARYL----VIVMCFIKHDSHLEINIGADIKHDIMDYIRFEAYLSLERERRNEIFTRAEEEICKLLTLNLLDKFLASAEYTVALDHGNG*AR 874
            NIRP++E+L       +P     +         R+         T D+ Q        R   +DSNRL+ IM+  PLR AFGEFC+++LCSESF+FL++ S++R  I     DGD     +E ++   R L     +V  +IK  +  EINIG+D KHDIM+  + EA+ SL+++ R  IF +AE EI ++L  NL+ +FL SA+Y  A+D G+G  R
Sbjct:  129 NIRPIQEVLYHARRNGIPKGVQMLLALSSRARRRSTSTIGGEEVTSDVTQNPSQHS--REPYIDSNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEGPVDGDANGSAEEENEAPTRRLGDVATMVNEYIKDGAPSEINIGSDTKHDIMELAKAEAFASLDQDARKLIFVKAEREIKRILEDNLMARFLVSAQYKRAVD-GDGDGR 343          
BLAST of mRNA_S-firma_F_contig1005.113.1 vs. uniprot
Match: D7G0P6_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P6_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 7.290e-26
Identity = 86/237 (36.29%), Postives = 127/237 (53.59%), Query Frame = 2
Query:  290 NIRPVREILRAVPGYRHNV---FGAMLAPAPRN------------FTDDIEQQAGGQGPGRAVLVDSNRLSVIMSLPPLRAAFGEFCRRALCSESFEFLVEVSKYRTI---------ASSSGDGDDEI---SQNFARYLVIVMCFIKHDSHLEINIGADIKHDIMDYIRFEAYLSLERER---------------RNEIFTRAEEEICKLLTLNLLDKFLASAEYTVALDHGNG*AR 874
            NIRP++E+L   P  R+++      +LA + R              T D+ Q     G  R   VDSNRL+ IM+  PLR AFGEFC+++LCSESF+FL++ S++R +         A+ S + ++E    +        +V  +IK  +  EINIG+D KH IM+  + EA+ SLE+ R               R  IF +AE EI ++L  NL+ +FLASA+Y  A+D G+G  R
Sbjct:  144 NIRPIQEVLHHAP--RNSIPKGVQMLLALSSRRRGGSSSPIGGEAVTTDVTQNPSQHG--RESYVDSNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEGPVEGDANGSAEEENEAPAHTSGLGDVAAMVNEYIKDGAPSEINIGSDTKHAIMELAKVEAFASLEQGRQGGRLEAFALLDQDARKLIFVKAEREIRRILEDNLMARFLASAQYKRAVD-GDGDGR 375          
BLAST of mRNA_S-firma_F_contig1005.113.1 vs. uniprot
Match: A0A6H5K562_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K562_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 3.920e-14
Identity = 40/96 (41.67%), Postives = 64/96 (66.67%), Query Frame = 2
Query:  449 RLSVIMSLPPLRAAFGEFCRRALCSESFEFLVEVSKYRTIASSSGDGDDEISQNFARYLVIVMCFIKHDSHLEINIGADIKHDIMDYIRFEAYLSL 736
            RL+ IM   PL  AFGEFCR+ALC ESF+FLV+VSK+++   ++  G ++   ++  ++VIV  +I+ +S+ E+NI +  K +I+ +    AY SL
Sbjct:   18 RLATIMGFLPLEHAFGEFCRKALCHESFQFLVDVSKFKSSVHAAHQGGND---SYEEFIVIVDEYIEDNSNFEVNIDSRTKKEILGFGDRSAYASL 110          
BLAST of mRNA_S-firma_F_contig1005.113.1 vs. uniprot
Match: A0A6H5K976_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K976_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 3.550e-13
Identity = 83/283 (29.33%), Postives = 127/283 (44.88%), Query Frame = 2
Query:   41 LVTTIRAWLVLAVGLSAACFGCLLRHVHDSTNLSRDIGQIGRVFAGLLCVYAVVQLTPMSPL-IYKYAHIALLTAIHPPLVYIINIRPVREILRAVPGYRHNVFG-AMLAPAPRNFT-------DDIEQQAGGQGPGRAVLVD---SNRLSVIMSLPPLRAAFGEFCRRALCSESFEFLVEVSKYRTIASSSGDGDDEISQNFARYLVIVMCFIKHDSHLEINIGADIKHDIMDYIRFEAYLSLERERRNEIFTRAEEEICKLLTLNLLDKFLASAEYTVALD 853
            ++  I   ++L +G S    G L R   D  ++S +I  +G  FA L     +  + PM P  +  +  I  LT      V+I NI+PVR++L+    +  N  G A L P     T       D + +      P  +        ++L  I+  PPL  AFGEFCR+ALCSES  FL     +     +S    D I   FAR+  IV  +I+  S  E+NI +  K  I+      ++  L  +    I   A +EI K+L  NL +KF ++ ++    D
Sbjct:  206 MIAVIAVDMLLTIGASLMLVGKLAR-TKDMFDMSVEIRSVGG-FALLALGELMGIVIPMVPATVLNFYLILFLTTRFGTAVWITNIQPVRKVLQRRADHPINAGGIASLFPYVPWTTRSGAVAIDVMNESKVFTKPSSSKFTSVKLDDKLEEILRFPPLLEAFGEFCRKALCSESLMFLTAGKDFHESLDASDADYDTI---FARFNEIVDQYIRDGSSFEVNIESKTKAQILSRTSMSSFKELPLDDAVCILDLAVKEIGKMLQENLYNKFRSTEQFKEIKD 483          
BLAST of mRNA_S-firma_F_contig1005.113.1 vs. uniprot
Match: A0A6H5JDD6_9PHAE (RGS domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDD6_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.380e-9
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 2
Query:  452 LSVIMSLPPLRAAFGEFCRRALCSESFEFLVEVSK-----YRTIASSSGDGDDEISQNFARYLVIVMCFIKHDSHLEINIGADIKHDIMDYIRFEAYLSLER 742
            L+ IM  PPLR AFG + R+ LCSESF+FLV+VS+     YRT       G D++ +    + VIV  +I  +S+ EINI +  K  +  +    AY SL++
Sbjct:    9 LAAIMEFPPLRQAFGGYFRKPLCSESFQFLVDVSEFSSLVYRTSGCDERGGKDDLDE----FNVIVGEYITDNSNSEINIDSVTKKKLTGFCERSAYASLDQ 106          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1005.113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LTR6_ECTSI6.730e-4938.46Developmental regulator FlbA n=1 Tax=Ectocarpus si... [more]
A0A6H5KX00_9PHAE7.080e-4838.33RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JIZ3_9PHAE4.860e-4535.22RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0P5_ECTSI2.550e-4335.52RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G3E2_ECTSI8.620e-2840.91RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5J8W8_9PHAE1.210e-2738.07RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0P6_ECTSI7.290e-2636.29RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K562_9PHAE3.920e-1441.67RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K976_9PHAE3.550e-1329.33RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JDD6_9PHAE1.380e-940.20RGS domain-containing protein (Fragment) n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1005contigS-firma_F_contig1005:12530..15615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LTR6
Max annot lvl2880.D8LTR6|-
Evalue2.06e-43
EggNOG OGs2D0MX@1|root,2SERP@2759|Eukaryota
DescriptionRegulator of G protein signaling domain
COG categoryS
Hectar predicted targeting categoryother localisation
Exons7
Model size1092
Cds size654
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815529.2255664-UTR-S-firma_F_contig1005:12529..127531622815529.2255664-UTR-S-firma_F_contig1005:12529..12753Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1005 12530..12753 -
1696949391.7103436-UTR-S-firma_F_contig1005:12529..127531696949391.7103436-UTR-S-firma_F_contig1005:12529..12753Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1005 12530..12753 -
1622815529.3237977-UTR-S-firma_F_contig1005:14879..149081622815529.3237977-UTR-S-firma_F_contig1005:14879..14908Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1005 14880..14908 -
1696949391.8495324-UTR-S-firma_F_contig1005:14879..149081696949391.8495324-UTR-S-firma_F_contig1005:14879..14908Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1005 14880..14908 -
1622815529.341579-UTR-S-firma_F_contig1005:15173..153281622815529.341579-UTR-S-firma_F_contig1005:15173..15328Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1005 15174..15328 -
1696949391.8598137-UTR-S-firma_F_contig1005:15173..153281696949391.8598137-UTR-S-firma_F_contig1005:15173..15328Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1005 15174..15328 -
1622815529.3587155-UTR-S-firma_F_contig1005:15585..156151622815529.3587155-UTR-S-firma_F_contig1005:15585..15615Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1005 15586..15615 -
1696949391.8805175-UTR-S-firma_F_contig1005:15585..156151696949391.8805175-UTR-S-firma_F_contig1005:15585..15615Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1005 15586..15615 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815529.2442052-CDS-S-firma_F_contig1005:12753..128221622815529.2442052-CDS-S-firma_F_contig1005:12753..12822Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1005 12754..12822 -
1696949391.7215729-CDS-S-firma_F_contig1005:12753..128221696949391.7215729-CDS-S-firma_F_contig1005:12753..12822Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1005 12754..12822 -
1622815529.2593417-CDS-S-firma_F_contig1005:13001..130581622815529.2593417-CDS-S-firma_F_contig1005:13001..13058Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1005 13002..13058 -
1696949391.7388587-CDS-S-firma_F_contig1005:13001..130581696949391.7388587-CDS-S-firma_F_contig1005:13001..13058Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1005 13002..13058 -
1622815529.272882-CDS-S-firma_F_contig1005:13596..138121622815529.272882-CDS-S-firma_F_contig1005:13596..13812Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1005 13597..13812 -
1696949391.789443-CDS-S-firma_F_contig1005:13596..138121696949391.789443-CDS-S-firma_F_contig1005:13596..13812Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1005 13597..13812 -
1622815529.2861211-CDS-S-firma_F_contig1005:14159..143971622815529.2861211-CDS-S-firma_F_contig1005:14159..14397Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1005 14160..14397 -
1696949391.8126478-CDS-S-firma_F_contig1005:14159..143971696949391.8126478-CDS-S-firma_F_contig1005:14159..14397Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1005 14160..14397 -
1622815529.3061416-CDS-S-firma_F_contig1005:14805..148791622815529.3061416-CDS-S-firma_F_contig1005:14805..14879Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1005 14806..14879 -
1696949391.8379989-CDS-S-firma_F_contig1005:14805..148791696949391.8379989-CDS-S-firma_F_contig1005:14805..14879Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1005 14806..14879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1005.113.1prot_S-firma_F_contig1005.113.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1005 12754..14879 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1005.113.1

>prot_S-firma_F_contig1005.113.1 ID=prot_S-firma_F_contig1005.113.1|Name=mRNA_S-firma_F_contig1005.113.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=218bp
MSPLIYKYAHIALLTAIHPPLVYIINIRPVREILRAVPGYRHNVFGAMLA
PAPRNFTDDIEQQAGGQGPGRAVLVDSNRLSVIMSLPPLRAAFGEFCRRA
LCSESFEFLVEVSKYRTIASSSGDGDDEISQNFARYLVIVMCFIKHDSHL
EINIGADIKHDIMDYIRFEAYLSLERERRNEIFTRAEEEICKLLTLNLLD
KFLASAEYTVALDHGNG*
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mRNA from alignment at S-firma_F_contig1005:12530..15615-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1005.113.1 ID=mRNA_S-firma_F_contig1005.113.1|Name=mRNA_S-firma_F_contig1005.113.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3086bp|location=Sequence derived from alignment at S-firma_F_contig1005:12530..15615- (Sphaerotrichia firma ET2_F female)
GTTGGCAGCTTGGACGCAAGGCGTGACAAGGTGAGACAGGCCTTTGTCAG CCAGTCAGAACATCGTGGGTAACGACGTCGTAGCGCCTTCGACGCTCGTG TGTTCCTCCCACGGCTCCATCATGCAGTCGGTGATCAACTGAGTCGTAGT GAAGGAGGAAAGTGTCAAAGCGAAGGAAACAGGAGTACCCACAACCCCCA ACAACAACGAGAGCTAACGACGCCGCGCGACATCGGCACCCCCGCAGCAT ATGTGCTTTCTACTTTCTCTGATCAATACGTTGGCAGGACTGCGAACTTG GTCACGACGATCCGAGCGTGGCTTGTTCTTGCCGTGGGGCTCTCAGCCGC GTGCTTCGGTTGTCTGCTGAGGCACGTTCACGACTCGACGAACCTGAGCC GGGACATCGGGCAGATAGGGAGGGTTTTCGCCGGATTGTTATGTGAGACG GAGGAATAGCGAAGCACGTACCGCCCGAAGTAGTTTAGGCGAATCTCTTC CGTCGCCGCATCCGGCATGCTCCTGTGCGTAAACAAGTCGAATCTAGCTC TATTAAAATTTTGCGAGAATTTGATAGTCCGGGACGCCGTCAGTGATCGA TGCGCAGACGCTTCCGGTCCCCACATGAAGAGCTATCCTTCGAACGGCTG CAAAAACCAGTACCACCGACTTGAACAGCGGCGTTTCGATACTTGTTGTC TCTGCAGGCGTTTATGCGGTGGTTCAGCTGACCCCGATGTCCCCGCTGAT ATACAAGTACGCCCACATCGCCCTGCTCACGGCCATCCACCCCCCCCTGG TCTACATCATGTGAGTGCCATCCTTGGCGGGTAACTCGAAGACACAATTG GCGGGCGGGGTGGCGGATGGGCTGCGTCACCGATCTACCGTACTACGTCC TGGTGAACGCTGAGCCAAACTTGATTTGCTCCAGTTTTTCATCTTTGTCG GCCCGTTCTTGGAAACAGACCGCTCTGTTTGAAATCGAAGGCGCAGACGG CGCACATGCGTGTCCATGGCGAGTTCGTTCGAATCCTCGGTGGCAGCCCA TTGCATCGGGGCCTTCGGGCTCTCGGGGTCTGTCAAAAGTAGCCTGATGT TCCCTTGAGGATTTCCCAAGCGGCTTGATAAGTGGCTTTCTCCGTATGTA CTGCCATAGCAGTAAAGATTCCATTTTCAGATCGAAATTTGCGTCGCGCC CTTTGGTCCTCGTCACAGCAACATCAGGCCGGTTCGAGAGATTCTTCGCG CTGTCCCCGGGTACAGACACAATGTTTTCGGGGCGATGCTAGCCCCGGCA CCCCGCAACTTCACGGACGACATCGAGCAGCAAGCGGGCGGCCAAGGCCC AGGCCGCGCGGTATTGGTTGATTCGAACAGGCTGTCCGTCATCATGAGCC TCCCTCCCTTAAGAGCAGCTTTCGGCGAGTTCTGCCGCAGGGCGCTATGC AGTGAGGTACGGCGTACCGTCCGTGGATGCACTTCTACTCAGCGTCGCAT ATTCCTCTGGTGATGATTTTGACAGATTGTTGGGAGTAAAACATCCGTGA ATATTCCGGCATGGAGTAGCGACCTACGCGTCCACGGGGGGTGGGCGCTA AAGAACACGTCTGCGCACTCCTGGTCACCCCTGACGAGCCGTTGCAGGAA TCGTTTGTGCGGGCTGCGGGTCCACCCATATTCATTGCGGCAGGAAGGCA TTACTCAGTCTGGTTCGGAGTCCGAGCACCATCATCTCTAATATGTTTCC ATTTCTTTTTTTTCCGCCGTCTCCCACACCATCGGGTAATTCTTCATCAT CAGTCGTTTGAATTCCTGGTCGAAGTGTCCAAGTACAGGACAATCGCATC AAGTTCAGGAGATGGGGACGACGAGATTTCGCAAAACTTCGCCAGGTACC TTGTCATCGTGATGTGCTTCATCAAACACGATTCCCATCTGGAGATCAAC ATTGGCGCCGACATCAAGCACGACATCATGGACTACATCAGGTTCGAGGC ATATCTTTCGCTGGAACGGGTGAGTCGAGCAGTGATGAGCAGATGAATAG CCGTTAAGGGCATGAGCTGAGGCTACTGTCTGGTTTCCTCGTAACGTTTC TGCCGAGTCGTCACTTTTGGGTAGCGTTGCCTGTCTCGTCAATGTTTTGA TTTTTCTTCTTTCTTGCCCCCCCACAAAGGTGATTGGTTGTTCATATCAT ACTAGAAAGCAACAAGCCCGGCGTGTTCATTGCCTCTGCACCTCCATGCT AATGTATCCGTGCACCAGTATGATCAGGCTCACAATAGCGAATCGTCCTT GACGATTTGTGGATATGGTACTACGGTCGCATGTTTTTGCGGCGGCTGTG GTGCTATCTATGGCATGGCGTACTTCGGGATTTTTCCTCTCAGTTGTAGG TTGTACGGCGGCCCTTTCATGCTTGGGTGGTGGTTCGCCGCAGCTTCTTT AGAGCCTCGTCCACAGATAAACGCTTGTGGGAGGACGCTCTGTCTGAGGA GAAACGCTTACCCCTCATCATCACCGTCGTTGTGCGCACCAAACAACACT TGTTCAGGAAAGGCGGAACGAAATCTTCACCCGTGCCGAAGAAGAAATCT GCAAGTTGCTGACGGTGAGACTACGCTGTGTTCCCACGTGTGATTGCCTC TATCGCACAATAGAGAGCTAGCCTCTAGCTATAGCTCCCTGAAAAATTCC CCCGTTGGCTATCCCCCAGGTACCTCACCCGACGCCGCCACCCTCTGGTA CACCTACCTCCCCGTGACCACACCACACCCGCTGTTGTCGCAGCTAAATC TTCTGGACAAGTTTCTTGCCTCGGCAGAGTACACCGTGGCTTTGGACCAC GGAAATGGATGAGCCCGACGACGGCAGAACTACATTGTTCTCCTGTCTGT ATGGATTGCGGGAAGCTGGGTAATAAGGGGGTCGAGTATGGTGCAAGCGT GTCTGGGAGGCAACCCTGAACACGGCATGTAGGCTAGTCATTTAATTGCC TGAAAGACGTGCGAGATGCGGGGGGGTGACGGTCTCTGCGATATAAAAAA CTGATTGTTTAGGTGCTACAGCCTTCGTCTGCTGTG
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Coding sequence (CDS) from alignment at S-firma_F_contig1005:12530..15615-

>mRNA_S-firma_F_contig1005.113.1 ID=mRNA_S-firma_F_contig1005.113.1|Name=mRNA_S-firma_F_contig1005.113.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1308bp|location=Sequence derived from alignment at S-firma_F_contig1005:12530..15615- (Sphaerotrichia firma ET2_F female)
ATGTCCCCGCTGATATACAAGTACGCCCACATCGCCCTGCTCACGGCCAT
CCACCCCCCCCTGGTCTACATCATATGTCCCCGCTGATATACAAGTACGC
CCACATCGCCCTGCTCACGGCCATCCACCCCCCCCTGGTCTACATCATCA
ACATCAGGCCGGTTCGAGAGATTCTTCGCGCTGTCCCCGGGTACAGACAC
AATGTTTTCGGGGCGATGCTAGCCCCGGCACCCCGCAACTTCACGGACGA
CATCGAGCAGCAAGCGGGCGGCCAAGGCCCAGGCCGCGCGGTATTGGTTG
ATTCGAACAGGCTGTCCGTCATCATGAGCCTCCCTCCCTTAAGAGCAGCT
TTCGGCGAGTTCTGCCGCAGGGCGCTATGCAGTGAGCAACATCAGGCCGG
TTCGAGAGATTCTTCGCGCTGTCCCCGGGTACAGACACAATGTTTTCGGG
GCGATGCTAGCCCCGGCACCCCGCAACTTCACGGACGACATCGAGCAGCA
AGCGGGCGGCCAAGGCCCAGGCCGCGCGGTATTGGTTGATTCGAACAGGC
TGTCCGTCATCATGAGCCTCCCTCCCTTAAGAGCAGCTTTCGGCGAGTTC
TGCCGCAGGGCGCTATGCAGTGAGTCGTTTGAATTCCTGGTCGAAGTGTC
CAAGTACAGGACAATCGCATCAAGTTCAGGAGATGGGGACGACGAGATTT
CGCAAAACTTCGCCAGGTACCTTGTCATCGTGATGTGCTTCATCAAACAC
GATTCCCATCTGGAGATCAACATTGGCGCCGACATCAAGCACGACATCAT
GGACTACATCAGGTTCGAGGCATATCTTTCGCTGGAACGGTCGTTTGAAT
TCCTGGTCGAAGTGTCCAAGTACAGGACAATCGCATCAAGTTCAGGAGAT
GGGGACGACGAGATTTCGCAAAACTTCGCCAGGTACCTTGTCATCGTGAT
GTGCTTCATCAAACACGATTCCCATCTGGAGATCAACATTGGCGCCGACA
TCAAGCACGACATCATGGACTACATCAGGTTCGAGGCATATCTTTCGCTG
GAACGGGAAAGGCGGAACGAAATCTTCACCCGTGCCGAAGAAGAAATCTG
CAAGTTGCTGACGGAAAGGCGGAACGAAATCTTCACCCGTGCCGAAGAAG
AAATCTGCAAGTTGCTGACGCTAAATCTTCTGGACAAGTTTCTTGCCTCG
GCAGAGTACACCGTGGCTTTGGACCACGGAAATGGATGACTAAATCTTCT
GGACAAGTTTCTTGCCTCGGCAGAGTACACCGTGGCTTTGGACCACGGAA
ATGGATGA
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