Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 159749.K0R0F1 |
| PFAMs | VWA_2 |
| Max annot lvl | 2836|Bacillariophyta |
| Evalue | 5.02e-05 |
| EggNOG OGs | KOG2353@1|root,KOG2353@2759|Eukaryota,2XEN6@2836|Bacillariophyta |
| Description | von Willebrand factor type A domain |
| COG category | PT |
| Hectar predicted targeting category | no signal peptide or anchor |
| Exons | 2 |
| Model size | 171 |
| Cds size | 168 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815528.8372583-CDS-S-firma_F_contig10040:2158..2247 | 1622815528.8372583-CDS-S-firma_F_contig10040:2158..2247 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10040 2159..2247 + |
| 1696949391.40946-CDS-S-firma_F_contig10040:2158..2247 | 1696949391.40946-CDS-S-firma_F_contig10040:2158..2247 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10040 2159..2247 + |
| 1622815528.8486862-CDS-S-firma_F_contig10040:4085..4164 | 1622815528.8486862-CDS-S-firma_F_contig10040:4085..4164 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10040 4086..4164 + |
| 1696949391.4239902-CDS-S-firma_F_contig10040:4085..4164 | 1696949391.4239902-CDS-S-firma_F_contig10040:4085..4164 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10040 4086..4164 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10040.108.1 >prot_S-firma_F_contig10040.108.1 ID=prot_S-firma_F_contig10040.108.1|Name=mRNA_S-firma_F_contig10040.108.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=56bp
RVEHPDRPGERQGRCIGPQRRGSHSVREPLYVAASSGPKDVVIIVDISGS
MEKNDR back to topmRNA from alignment at S-firma_F_contig10040:2159..4165+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-firma_F_contig10040.108.1 ID=mRNA_S-firma_F_contig10040.108.1|Name=mRNA_S-firma_F_contig10040.108.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2007bp|location=Sequence derived from alignment at S-firma_F_contig10040:2159..4165+ (Sphaerotrichia firma ET2_F female)
CGGGTTGAACATCCAGACCGTCCTGGAGAGCGCCAGGGGCGTTGCATTGG
ACCTCAGCGCCGCGGCAGTCACAGCGTACGAGAGCCGTTGCGTTCTTACC
AAGGGCGAATGCGAGGGTCTTCACTACTCCGGCTGCAGGAGCCGCCTGCC
CAGGGGCGAGTGCACCAGCAACACCATGACAGTCGTCGACTGTCTCGAAG
CAGAGTGTGGTAGCGTGCAAGATTTCTCCAACCCAGTCTGTGAGTCGGTC
GACGCTGCTTTTTTCGGTAGAAGCGCCGGTGGTCTGACATACATGCCGTC
GGACGCAACGAAGACGATATATCTTTCTGACGTTTCCAGTGCCACATAGA
GGTTGTGCGTCCAGCCTCTTGTGAGAAGAAATAATTGTCTCTCCAGATAG
ATGCAGACACGCCGTTCACCACCCCGGCAACCCCCGGCCACAATGAGCGA
TGCTTTCCACACCAACAACCCGCACAGTTTGTGGGTTCTTGTTTGTTTAT
ATTGGGGCATGGTCATACGGAGTACATAATGAAATGCCTCGTTCTTGGCA
AGTCACGGTTCTCCTCCGTCCTCTGTTATGCTGTGATGCATACATCATCG
TTTTCGCAAGCAGCTTCAAAACAATATTCCGCGTTGTTGTCCAATACCTC
GCAGTCGCTGAGGACGTTCGGGAGTCGCTCGTGACTATATCGTGGACACC
TATGGATGGCCTACCATCGCCGTAGAATCACTTGAGAACGTCCCGGTCAG
AAACAGGGGAATTTTTCGCTTTTGCCTCCTCCGCGGGTGGTTTGGCGCTG
TCACCCCTCTATACCTTTGAGAACGTCCGGGGTTGGTGTTTGGACCACTT
TTGTTTACCACGGTACTTTCACCCCGCCGGGCGTTCTGAAGGAATATCAC
GGCACTCCCAAATACATTGCTCCGCATTTGCACCTAACCTGTTCGCCTTT
TTGTCGTCCTTGCACACGGTGCTAAACCGAACCCCCTAAACTGCTGTGCT
GCGCCGTGTCACTCTACTCACGAAATCACGCACCCGGATTATTGTTTACG
AAACGTCATCCGCGCAGTGCGCATCCCCGAAAGTATCCAGGGCGTCGACG
GCATTATCACCGACCTCGACGTGATCGAGACGGTCTGCTACGGTATCATC
CTGGACGGTCCTCTATCCGATGGGTACGAGGGCTCGCAGTCGCCCGACGC
CGTGTCTTCGGTCTTCACGTACTTCGGCTCCTGGAACGGCGTGATGAGGC
AGTACCCTGGAGCGAGCTACAGCAGCGAGTGCGGGAACTACGACCCTCGT
GTTCGCCCTTGGTCAGTTGTTGGCTATGATCTCCCTGTTTTGTTTCATAC
TGCCGAAGCGGAGGACTAACTTACAGCGTCGTGCAATGACCAACACCGTG
CCATGCCGATATGCTGCTATTATGCTGTTATCGTCCCGGCGACAATACTC
GCACAATGATAGTTCATGTGGCTGTTACGTACGTTAAGGCTCGGTACGTC
GGCCTTTTTTGTTGAGCTAGCAGACAACCTCCGTCTTCGACTAACTCGGC
CTTTGTGCAGCAACAGCGACTATCCTAAAGATTGCAGGCCTACTCAATGT
AGGGAGAACGCCCCCGTCCCTCCCAAACACATGGCGTACTCCACGATTGG
GGCTATCTCACGTTTGGCGATAGTGATCCACTTTTTAAGCTGTTGAGTGA
ATGCGGCAAGTGTTTCGATTAATAAGCAGGATGCGTTTCCACAAGAGCTT
ATTCGCTGTGGCCATACTCCTGCTCCTACGACACCCCATGAGTGTATGTG
TAACCAGGGTATGTGGCAAGGCGTTACATCCTCAGAAATCGTTCGTACCA
CAAAATAGTACACGGCTGACGAATAATGTAGAAAATTTATTAAAAATAAT
AAAACATGCTTATTCCATCTCCTGAAGGTATGTAGCAGCTTCGAGTGGCC
CGAAGGACGTCGTGATCATCGTGGACATCAGCGGTTCCATGGAGAAGAAT
GACAGGT back to topCoding sequence (CDS) from alignment at S-firma_F_contig10040:2159..4165+ >mRNA_S-firma_F_contig10040.108.1 ID=mRNA_S-firma_F_contig10040.108.1|Name=mRNA_S-firma_F_contig10040.108.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=336bp|location=Sequence derived from alignment at S-firma_F_contig10040:2159..4165+ (Sphaerotrichia firma ET2_F female)
CGGGTTGAACATCCAGACCGTCCTGGAGAGCGCCAGGGGCGTTGCATTGG
ACCTCAGCGCCGCGGCAGTCACAGCGTACGAGAGCCGTTCGGGTTGAACA
TCCAGACCGTCCTGGAGAGCGCCAGGGGCGTTGCATTGGACCTCAGCGCC
GCGGCAGTCACAGCGTACGAGAGCCGTTGTATGTAGCAGCTTCGAGTGGC
CCGAAGGACGTCGTGATCATCGTGGACATCAGCGGTTCCATGGAGAAGAA
TGACAGGGTATGTAGCAGCTTCGAGTGGCCCGAAGGACGTCGTGATCATC
GTGGACATCAGCGGTTCCATGGAGAAGAATGACAGG back to top
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