mRNA_S-firma_F_contig10039.103.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10039.103.1
Unique NamemRNA_S-firma_F_contig10039.103.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10039.103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10039contigS-firma_F_contig10039:1288..1878 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size591
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10039.103.1prot_S-firma_F_contig10039.103.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10039 1334..1651 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815527.8939893-UTR-S-firma_F_contig10039:1287..13331622815527.8939893-UTR-S-firma_F_contig10039:1287..1333Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10039 1288..1333 +
1696949390.3907719-UTR-S-firma_F_contig10039:1287..13331696949390.3907719-UTR-S-firma_F_contig10039:1287..1333Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10039 1288..1333 +
1622815527.9241216-UTR-S-firma_F_contig10039:1651..18781622815527.9241216-UTR-S-firma_F_contig10039:1651..1878Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10039 1652..1878 +
1696949390.415785-UTR-S-firma_F_contig10039:1651..18781696949390.415785-UTR-S-firma_F_contig10039:1651..1878Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10039 1652..1878 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815527.9089882-CDS-S-firma_F_contig10039:1333..16511622815527.9089882-CDS-S-firma_F_contig10039:1333..1651Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10039 1334..1651 +
1696949390.406154-CDS-S-firma_F_contig10039:1333..16511696949390.406154-CDS-S-firma_F_contig10039:1333..1651Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10039 1334..1651 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10039.103.1

>prot_S-firma_F_contig10039.103.1 ID=prot_S-firma_F_contig10039.103.1|Name=mRNA_S-firma_F_contig10039.103.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=106bp
MVIQANHDKLKLLKKRRRWKEPTASKESPESALDLKSPCWPVVACSPASG
NRHAVMHPGGHSNTASKTKSVSVPLWQLSDPQIQPSTEIEDHQVEHKTHI
NTRVT*
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mRNA from alignment at S-firma_F_contig10039:1288..1878+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10039.103.1 ID=mRNA_S-firma_F_contig10039.103.1|Name=mRNA_S-firma_F_contig10039.103.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=591bp|location=Sequence derived from alignment at S-firma_F_contig10039:1288..1878+ (Sphaerotrichia firma ET2_F female)
CACGACGGAGGACGCATGTCTAGGCGACACACACACTCGGAGGCACATGG
TGATCCAAGCGAATCATGACAAGCTCAAGCTTCTGAAAAAAAGGCGGCGG
TGGAAAGAGCCCACGGCTTCCAAAGAAAGCCCAGAATCTGCTCTCGATCT
CAAATCCCCTTGTTGGCCGGTGGTGGCGTGCTCGCCCGCATCGGGAAACA
GGCACGCGGTAATGCACCCTGGTGGACACTCCAACACAGCCTCAAAAACA
AAGAGTGTGAGCGTCCCTCTATGGCAGCTCTCTGATCCACAAATCCAGCC
TTCCACCGAGATCGAGGATCACCAGGTTGAGCACAAAACGCACATCAACA
CGCGCGTTACTTAGTACCTGGTGCTCCGTACTTCGTAGATGAAACTTGTG
CGCGTTACTTAATACCTGGTGCTCCGAACTTCGCAGATAAAACTTGTGCT
TAACTTTCAAGGGCACCCAAACAAACCACAGACGCTCTTGGCACAGCACA
CCCGGGACAGATACAAGCAGCGCACGCGCCCGAACCTGGTCGTCCGCGAA
GCTGTCGGCATAGCTCTCCGGCACCTCCGTCACGGTCACGG
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Coding sequence (CDS) from alignment at S-firma_F_contig10039:1288..1878+

>mRNA_S-firma_F_contig10039.103.1 ID=mRNA_S-firma_F_contig10039.103.1|Name=mRNA_S-firma_F_contig10039.103.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=636bp|location=Sequence derived from alignment at S-firma_F_contig10039:1288..1878+ (Sphaerotrichia firma ET2_F female)
ATGGTGATCCAAGCGAATCATGACAAGCTCAAGCTTCTGAAAAAAAGGCG
GCGGTGGAAAGAGCCCACGGCTTCCAAAGAAAGCCCAGAATCTGCTCTCG
ATCTCAAATCCCCTTGTTGGCCGGTGGTGGCGTGCTCGCCCGCATCGGGA
AACAGGCACGCGGTAATGCACCCTGGTGGACACTCCAACACAGCCTCAAA
AACAAAGAGTGTGAGCGTCCCTCTATGGCAGCTCTCTGATCCACAAATCC
AGCCTTCCACCGAGATCGAGGATCACCAGGTTGAGCACAAAACGCACATC
AACACGCGCGTTACTTAGATGGTGATCCAAGCGAATCATGACAAGCTCAA
GCTTCTGAAAAAAAGGCGGCGGTGGAAAGAGCCCACGGCTTCCAAAGAAA
GCCCAGAATCTGCTCTCGATCTCAAATCCCCTTGTTGGCCGGTGGTGGCG
TGCTCGCCCGCATCGGGAAACAGGCACGCGGTAATGCACCCTGGTGGACA
CTCCAACACAGCCTCAAAAACAAAGAGTGTGAGCGTCCCTCTATGGCAGC
TCTCTGATCCACAAATCCAGCCTTCCACCGAGATCGAGGATCACCAGGTT
GAGCACAAAACGCACATCAACACGCGCGTTACTTAG
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