mRNA_S-firma_F_contig10038.101.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10038.101.1
Unique NamemRNA_S-firma_F_contig10038.101.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10038.101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10038contigS-firma_F_contig10038:3630..4262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LFX5
Max annot lvl2880.D8LFX5|-
Evalue0.000225
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Model size633
Cds size633
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815527.7873251-CDS-S-firma_F_contig10038:3629..42621622815527.7873251-CDS-S-firma_F_contig10038:3629..4262Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10038 3630..4262 +
1696949390.292154-CDS-S-firma_F_contig10038:3629..42621696949390.292154-CDS-S-firma_F_contig10038:3629..4262Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10038 3630..4262 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10038.101.1prot_S-firma_F_contig10038.101.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10038 3630..4262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10038.101.1

>prot_S-firma_F_contig10038.101.1 ID=prot_S-firma_F_contig10038.101.1|Name=mRNA_S-firma_F_contig10038.101.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=211bp
CQYPKCRLSRSFGLAGQKAAYCAKHKIDGMVNVASRKCAALGCARGPSFG
QPGDKKPVFCSGHRLPGYINVVSRRCAHDGCRKGPSFGSIGTGNRATYCA
KHKIAGMVNVVSKSCKEEGCTSVPFFGFEGGRAMFCGKHKRNGQRNLTSR
RCSGPDCSTVPSYGKPGDPRPTCCTHHKPPGAINLLSPRCAAPGCRKGSG
SKAFAGCTACD
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mRNA from alignment at S-firma_F_contig10038:3630..4262+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10038.101.1 ID=mRNA_S-firma_F_contig10038.101.1|Name=mRNA_S-firma_F_contig10038.101.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=633bp|location=Sequence derived from alignment at S-firma_F_contig10038:3630..4262+ (Sphaerotrichia firma ET2_F female)
TGCCAGTATCCGAAATGCCGCCTCAGCCGCAGCTTTGGCCTGGCCGGACA
GAAGGCGGCGTATTGTGCCAAGCACAAGATTGACGGAATGGTCAACGTCG
CTTCCCGCAAGTGCGCGGCGCTCGGATGTGCCAGAGGGCCCAGCTTCGGT
CAACCAGGAGACAAGAAGCCCGTCTTCTGCTCCGGGCACCGCCTGCCGGG
CTACATCAACGTCGTCTCGCGGAGGTGCGCTCATGACGGATGCCGCAAAG
GCCCGTCGTTCGGGAGCATCGGAACCGGGAACAGGGCCACCTACTGCGCA
AAGCACAAGATTGCCGGGATGGTCAACGTGGTCTCGAAGAGCTGCAAGGA
AGAGGGCTGTACCAGCGTCCCGTTCTTTGGATTCGAGGGAGGGCGGGCAA
TGTTCTGCGGCAAGCACAAGCGGAACGGCCAGCGGAACCTTACCAGTCGG
CGCTGCTCCGGCCCCGACTGCAGCACGGTCCCGTCTTACGGGAAGCCTGG
GGACCCGCGGCCGACGTGCTGCACGCACCATAAGCCACCCGGAGCGATCA
ATCTCCTGAGCCCCCGGTGCGCTGCCCCTGGCTGCCGCAAGGGATCGGGA
AGCAAAGCTTTTGCCGGGTGCACAGCCTGTGAT
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Coding sequence (CDS) from alignment at S-firma_F_contig10038:3630..4262+

>mRNA_S-firma_F_contig10038.101.1 ID=mRNA_S-firma_F_contig10038.101.1|Name=mRNA_S-firma_F_contig10038.101.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1266bp|location=Sequence derived from alignment at S-firma_F_contig10038:3630..4262+ (Sphaerotrichia firma ET2_F female)
TGCCAGTATCCGAAATGCCGCCTCAGCCGCAGCTTTGGCCTGGCCGGACA
GAAGGCGGCGTATTGTGCCAAGCACAAGATTGACGGAATGGTCAACGTCG
CTTCCCGCAAGTGCGCGGCGCTCGGATGTGCCAGAGGGCCCAGCTTCGGT
CAACCAGGAGACAAGAAGCCCGTCTTCTGCTCCGGGCACCGCCTGCCGGG
CTACATCAACGTCGTCTCGCGGAGGTGCGCTCATGACGGATGCCGCAAAG
GCCCGTCGTTCGGGAGCATCGGAACCGGGAACAGGGCCACCTACTGCGCA
AAGCACAAGATTGCCGGGATGGTCAACGTGGTCTCGAAGAGCTGCAAGGA
AGAGGGCTGTACCAGCGTCCCGTTCTTTGGATTCGAGGGAGGGCGGGCAA
TGTTCTGCGGCAAGCACAAGCGGAACGGCCAGCGGAACCTTACCAGTCGG
CGCTGCTCCGGCCCCGACTGCAGCACGGTCCCGTCTTACGGGAAGCCTGG
GGACCCGCGGCCGACGTGCTGCACGCACCATAAGCCACCCGGAGCGATCA
ATCTCCTGAGCCCCCGGTGCGCTGCCCCTGGCTGCCGCAAGGGATCGGGA
AGCAAAGCTTTTGCCGGGTGCACAGCCTGTGATTGCCAGTATCCGAAATG
CCGCCTCAGCCGCAGCTTTGGCCTGGCCGGACAGAAGGCGGCGTATTGTG
CCAAGCACAAGATTGACGGAATGGTCAACGTCGCTTCCCGCAAGTGCGCG
GCGCTCGGATGTGCCAGAGGGCCCAGCTTCGGTCAACCAGGAGACAAGAA
GCCCGTCTTCTGCTCCGGGCACCGCCTGCCGGGCTACATCAACGTCGTCT
CGCGGAGGTGCGCTCATGACGGATGCCGCAAAGGCCCGTCGTTCGGGAGC
ATCGGAACCGGGAACAGGGCCACCTACTGCGCAAAGCACAAGATTGCCGG
GATGGTCAACGTGGTCTCGAAGAGCTGCAAGGAAGAGGGCTGTACCAGCG
TCCCGTTCTTTGGATTCGAGGGAGGGCGGGCAATGTTCTGCGGCAAGCAC
AAGCGGAACGGCCAGCGGAACCTTACCAGTCGGCGCTGCTCCGGCCCCGA
CTGCAGCACGGTCCCGTCTTACGGGAAGCCTGGGGACCCGCGGCCGACGT
GCTGCACGCACCATAAGCCACCCGGAGCGATCAATCTCCTGAGCCCCCGG
TGCGCTGCCCCTGGCTGCCGCAAGGGATCGGGAAGCAAAGCTTTTGCCGG
GTGCACAGCCTGTGAT
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