mRNA_S-firma_F_contig10028.90.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10028.90.1
Unique NamemRNA_S-firma_F_contig10028.90.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10028.90.1 vs. uniprot
Match: D7G8Q9_ECTSI (Ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Q9_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 4.160e-6
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = -1 
Query:  391 LNVDQKTNEDILLNVLKRVDETEKDLRKV 477
            LNVDQKTNEDILLNVLKRVDETEKDLRK+
Sbjct:  510 LNVDQKTNEDILLNVLKRVDETEKDLRKM 538
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10028.90.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8Q9_ECTSI4.160e-696.55Ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10028contigS-firma_F_contig10028:434..910 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size477
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815526.6109338-CDS-S-firma_F_contig10028:433..7541622815526.6109338-CDS-S-firma_F_contig10028:433..754Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10028 434..754 +
1696949389.176287-CDS-S-firma_F_contig10028:433..7541696949389.176287-CDS-S-firma_F_contig10028:433..754Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10028 434..754 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815526.6243086-UTR-S-firma_F_contig10028:754..9101622815526.6243086-UTR-S-firma_F_contig10028:754..910Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10028 755..910 +
1696949389.205274-UTR-S-firma_F_contig10028:754..9101696949389.205274-UTR-S-firma_F_contig10028:754..910Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10028 755..910 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10028.90.1prot_S-firma_F_contig10028.90.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10028 434..754 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10028.90.1

>prot_S-firma_F_contig10028.90.1 ID=prot_S-firma_F_contig10028.90.1|Name=mRNA_S-firma_F_contig10028.90.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=107bp
WRSSNVSSINRQAGAQEGRKASNQCRSNTSRLGPLSVCSFEPSPAVVERN
TLTHIYQLHPNACYKEIWAVDRQRGENISVRQGNRHRLFPNLRTCWRLLT
CVEKHN*
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mRNA from alignment at S-firma_F_contig10028:434..910+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10028.90.1 ID=mRNA_S-firma_F_contig10028.90.1|Name=mRNA_S-firma_F_contig10028.90.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=477bp|location=Sequence derived from alignment at S-firma_F_contig10028:434..910+ (Sphaerotrichia firma ET2_F female)
TGGCGATCGTCGAACGTTTCATCTATCAATCGGCAGGCAGGGGCGCAGGA
AGGCAGGAAGGCAAGCAATCAATGTAGATCGAACACCAGCAGGCTCGGAC
CGCTCTCTGTATGTAGTTTCGAACCGTCGCCGGCTGTTGTTGAACGAAAT
ACACTCACACACATTTACCAGCTGCATCCCAACGCGTGCTACAAGGAAAT
CTGGGCGGTCGATCGCCAGCGAGGAGAGAACATTAGCGTGCGGCAGGGAA
ACAGACATCGTTTGTTTCCAAATTTAAGAACATGTTGGCGTCTCCTCACT
TGTGTCGAAAAACACAACTGAGGCCAAAACACGATCGCACAAGCCACCAG
AATGACTAATGATCGAATTATCGGACCCCGGAGCGCCTCACACCTTTCTG
AGGTCCTTCTCCGTCTCGTCGACCCTCTTTAACACGTTGAGAAGAATGTC
CTCATTGGTTTTTTGGTCCACGTTGAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10028:434..910+

>mRNA_S-firma_F_contig10028.90.1 ID=mRNA_S-firma_F_contig10028.90.1|Name=mRNA_S-firma_F_contig10028.90.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=642bp|location=Sequence derived from alignment at S-firma_F_contig10028:434..910+ (Sphaerotrichia firma ET2_F female)
TGGCGATCGTCGAACGTTTCATCTATCAATCGGCAGGCAGGGGCGCAGGA
AGGCAGGAAGGCAAGCAATCAATGTAGATCGAACACCAGCAGGCTCGGAC
CGCTCTCTGTATGTAGTTTCGAACCGTCGCCGGCTGTTGTTGAACGAAAT
ACACTCACACACATTTACCAGCTGCATCCCAACGCGTGCTACAAGGAAAT
CTGGGCGGTCGATCGCCAGCGAGGAGAGAACATTAGCGTGCGGCAGGGAA
ACAGACATCGTTTGTTTCCAAATTTAAGAACATGTTGGCGTCTCCTCACT
TGTGTCGAAAAACACAACTGATGGCGATCGTCGAACGTTTCATCTATCAA
TCGGCAGGCAGGGGCGCAGGAAGGCAGGAAGGCAAGCAATCAATGTAGAT
CGAACACCAGCAGGCTCGGACCGCTCTCTGTATGTAGTTTCGAACCGTCG
CCGGCTGTTGTTGAACGAAATACACTCACACACATTTACCAGCTGCATCC
CAACGCGTGCTACAAGGAAATCTGGGCGGTCGATCGCCAGCGAGGAGAGA
ACATTAGCGTGCGGCAGGGAAACAGACATCGTTTGTTTCCAAATTTAAGA
ACATGTTGGCGTCTCCTCACTTGTGTCGAAAAACACAACTGA
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