mRNA_S-firma_F_contig10028.89.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10028.89.1 vs. uniprot
Match: D7G8Q9_ECTSI (Ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Q9_ECTSI) HSP 1 Score: 518 bits (1333), Expect = 8.000e-174 Identity = 467/604 (77.32%), Postives = 502/604 (83.11%), Query Frame = 1
Query: 1 VQQVQDYIAKGGDVNKPDRENCSPLMWACWGGHVEIVKRLLDEGAKPDTFSHQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVGQSASQKNRGKSEDIKKLLKSKMPEDDDQGLDGSYHPESGGTLMGAAMSVAKNVASNTSAMSPAGSEPAKTTP--------DKAATTANGAAKATNGDTPKTEREES--HGGVEVGPLEVSPSDQAKTTAKLEAPASSRKSSFLLNIGGKQSPERGVTDKRSFGAGGPAAVDRRASAGGAPSSRGSSPANAPSGGSGPIGGERGRKKSTINLMMADGMVSIGDGKAGNEASPSNKRRGSNFGGNNAPMAPAAASRVKRSPQGSIAGESSTKGSERDDMEEVSNEEVAYEMALEQIIADLDDLEERVENLNVDQKTNEDILLNVLKRVDETEKDLRKMKRSTIAKDFEAKQANPGGVLDRTIGSEAPLAATVVGTTGGSGADWAGNGIATDQFASKDELGELRQAMAMKVSE 1782
+Q+VQD+IAKGGDVNKPDRE+CSPLMWACWGGHVEIVKRLLDEGAKPDT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVGQSASQKNRGKSEDI KLLK+KMPEDDDQGLDGSYHPES GTLMGAAMSVAKNVAS+TS S G A TTP DKAA + +GA+KATNG++P+ +R+E+ G G ++ +P +Q KT AK +APA +RKSS L +GG + + RG+SPA APSG G GG+R RKKSTINL MADGMVSIGDGK GNEASP+NKRRGS +G P APA ASRVKRSPQGS+ GESSTKGSERDDMEEVSNEEVAYEMALEQIIADLDDLEERVENLNVDQKTNEDILLNVLKRVDETEKDLRKMKR+TIAKDFEAKQANP G LDRT+G+E PLA + GTT SGADW+GNGIA DQFASKDELGELRQA+AMK E
Sbjct: 18 LQKVQDFIAKGGDVNKPDREHCSPLMWACWGGHVEIVKRLLDEGAKPDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVGQSASQKNRGKSEDIIKLLKNKMPEDDDQGLDGSYHPESDGTLMGAAMSVAKNVASHTSTSSTTGEAAANTTPTAAADAVVDKAAVSTSGASKATNGESPRADRQETIPPSGDSNGLVDGAPPEQTKTAAKSDAPAPARKSSLLFGVGGGNAKQXXXXXXXXXXXXXXXXXXXX---------RGNSPAAAPSGAQGAGGGDRARKKSTINLTMADGMVSIGDGKPGNEASPTNKRRGSTYGMTTVPAAPAPASRVKRSPQGSVTGESSTKGSERDDMEEVSNEEVAYEMALEQIIADLDDLEERVENLNVDQKTNEDILLNVLKRVDETEKDLRKMKRTTIAKDFEAKQANPDGALDRTLGNEPPLAPNLGGTTAASGADWSGNGIAADQFASKDELGELRQAVAMKDKE 612 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10028.89.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10028.89.1 >prot_S-firma_F_contig10028.89.1 ID=prot_S-firma_F_contig10028.89.1|Name=mRNA_S-firma_F_contig10028.89.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=596bp VQQVQDYIAKGGDVNKPDRENCSPLMWACWGGHVEIVKRLLDEGAKPDTFback to top mRNA from alignment at S-firma_F_contig10028:225..4663- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10028.89.1 ID=mRNA_S-firma_F_contig10028.89.1|Name=mRNA_S-firma_F_contig10028.89.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4439bp|location=Sequence derived from alignment at S-firma_F_contig10028:225..4663- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10028:225..4663- >mRNA_S-firma_F_contig10028.89.1 ID=mRNA_S-firma_F_contig10028.89.1|Name=mRNA_S-firma_F_contig10028.89.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=3576bp|location=Sequence derived from alignment at S-firma_F_contig10028:225..4663- (Sphaerotrichia firma ET2_F female)back to top |