mRNA_S-firma_F_contig10027.87.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10027.87.1
Unique NamemRNA_S-firma_F_contig10027.87.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10027.87.1 vs. uniprot
Match: A0A485KJJ8_9STRA (Aste57867_8161 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KJJ8_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 7.050e-21
Identity = 62/160 (38.75%), Postives = 87/160 (54.37%), Query Frame = 1
Query:    1 PLPRYTTTH-PNVVLAIGRSKNDNIVVYEFVADTSSGSVIQAYWLDIDPKYIEANRKKGKTDDRVELGMMESSMAYGVKTKPVADNT--WSVTMVAIPDKTLTLRLVDGRPQLITSING-KDAVLTRVFVATKEGWLKPTVLHVDFFGTDPDSGEAVTER 468
            P+P     H PNV+ AI R+KN N+V Y   A+   G++  A  L +D    E N   G+ D    L M+E + AYGVK  P+      +++ + ++PDKT+ L +VDG+    T ING     L RVFV +   W  P V H++ F TDP SG AV E+
Sbjct:   11 PVPHIREHHEPNVLFAIHRNKNKNVVSY--AANLVDGALNAADPLKVDWIMYE-NNPVGRED----LNMIERNTAYGVKFTPIVGKAGAFNIILSSLPDKTIELHVVDGKAVATTDINGVAGCTLNRVFVTSTTSWGMPKVQHIEMFATDP-SGAAVVEK 162          
BLAST of mRNA_S-firma_F_contig10027.87.1 vs. uniprot
Match: A0A024TPF8_9STRA (DUF4833 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TPF8_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.400e-20
Identity = 63/160 (39.38%), Postives = 84/160 (52.50%), Query Frame = 1
Query:    1 PLPRYTTTH-PNVVLAIGRSKNDNIVVYEFVADTSSGSVIQAYWLDIDPKYIEANRKKGKTDDRVELGMMESSMAYGVKTKPVADNT--WSVTMVAIPDKTLTLRLVDGRPQLITSING-KDAVLTRVFVATKEGWLKPTVLHVDFFGTDPDSGEAVTER 468
            P+    T H PNVV AI R+KN N+V Y    + ++G++     L +D    E N        R  L M+E + AYGV   P       + V + ++PDKT+ L LVDG+P   T ING     L RVFV +   W  P V H++ FGTDP SG AV E+
Sbjct:   11 PVEHIRTNHEPNVVFAIHRNKNKNVVSY--AVNHANGAIDAKEPLTVDWIMFENNPV-----GREGLNMIERNTAYGVTVTPWEGKAGVFKVVLASLPDKTIELALVDGKPIAHTDINGVAGCKLNRVFVTSTTSWGMPKVQHIEIFGTDP-SGTAVVEK 162          
BLAST of mRNA_S-firma_F_contig10027.87.1 vs. uniprot
Match: A0A6G0WPJ8_9STRA (DUF4833 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WPJ8_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.980e-20
Identity = 55/161 (34.16%), Postives = 79/161 (49.07%), Query Frame = 1
Query:    1 PLPRYTTTH-PNVVLAIGRSKNDNIVVYEFVADTSSGSVIQAYWLDIDPKYIEANRKKGKTDDRVELGMMESSMAYGVKTKPVADN--TWSVTMVAIPDKTLTLRLVDGRPQLITSING-KDAVLTRVFVATKEGWLKPTVLHVDFFGTDPDSGEAVTERV 471
            P+    ++H PNVV  I R+KN N+V Y       S  ++       DP  +E    +     R  L M+E + AYG    P      ++ V + ++PDKT+ L LVDG+P     ING     LTRVFV +   W  P V H++ FGTDP     V +++
Sbjct:   11 PVEHVRSSHEPNVVFCIHRNKNKNVVSY-------SAKIVDGALDSKDPLNVEWIMFENNPIGREGLNMIERNTAYGTNVTPWEGKAGSYKVVLASLPDKTIELHLVDGKPVATAEINGVAGCTLTRVFVTSTTSWGMPKVQHIEMFGTDPSGAPVVEKKI 164          
BLAST of mRNA_S-firma_F_contig10027.87.1 vs. uniprot
Match: A0A255ZPM2_9FLAO (DUF4833 domain-containing protein n=1 Tax=Flavobacterium cyanobacteriorum TaxID=2022802 RepID=A0A255ZPM2_9FLAO)

HSP 1 Score: 73.9 bits (180), Expect = 1.700e-13
Identity = 51/150 (34.00%), Postives = 83/150 (55.33%), Query Frame = 1
Query:   28 PNVVLAIGRSKNDNIVVYEFVADTSSGSVIQAYW-LDIDPKYIEANRKKGKTDDRVELGMMESSMAYGVKTKPVADNTWSVTMVAIPDKTLTLRL-VDGRPQLITSINGKDAVLTRVFVATK-EGWLKPTVLHVDFFGTDPDSGEAVTER 468
            P+ +  I  ++N N  VY+  A+  +   + A   +DI   Y  A  K GK +   EL  M+  +AYGV    +++ T+   +V+ PDK L L+   DGR  + T+ING++ +L R+F+ATK +  L P + + DF+G  P +G  + ER
Sbjct:   30 PDRLFYIQHNRNHNTFVYD--ANVGANKTLNAKEPIDI---YRIAYTKGGKKE---ELSGMQRKLAYGVTCSRLSNGTFEFCLVSFPDKKLYLKHGSDGRYVVTTTINGREMILHRIFLATKNDSLLSPKLDYADFYGKCPKTGREIKER 171          
BLAST of mRNA_S-firma_F_contig10027.87.1 vs. uniprot
Match: A0A1F9SKF0_9BACT (DUF4833 domain-containing protein n=1 Tax=Elusimicrobia bacterium GWB2_63_22 TaxID=1797929 RepID=A0A1F9SKF0_9BACT)

HSP 1 Score: 69.7 bits (169), Expect = 1.060e-11
Identity = 44/151 (29.14%), Postives = 78/151 (51.66%), Query Frame = 1
Query:   37 VLAIGRSKNDNIVVYEFVADTSSGSV-----IQAYWLDIDPKYIEANRKKGKTDDRVELGMMESSMAYGVKTKPVADNT-WSVTMVAIPDKTLTLRLVDGRPQLITSINGKDAVLTRVFVATKEGWLKPTVLHVDFFGTDPDSGEAVTERV 471
            +  IGR+KN N++ YE   D   G +     + AYW+     + E  R+K       +L  +E   AYG+K KP +    +++T+ A P   + +R       +   ING+ AVL ++F+  ++  L P V +++ FG D  +G+A +E++
Sbjct:   58 LFVIGRNKNANVIHYEANLDPD-GELNPKWPVIAYWV----LHAEDGRRK-------KLNWLEKKKAYGIKIKPASSRDGYTLTLAAAPWMPMAVRKAGDAVHVEAKINGRTAVLEKMFIQARDKLLGPKVEYIELFGKDLLTGQACSEKI 196          
BLAST of mRNA_S-firma_F_contig10027.87.1 vs. uniprot
Match: A0A7T7JIE6_9SPHI (DUF4833 domain-containing protein n=1 Tax=Mucilaginibacter ginkgonis TaxID=2682091 RepID=A0A7T7JIE6_9SPHI)

HSP 1 Score: 66.2 bits (160), Expect = 1.910e-10
Identity = 46/156 (29.49%), Postives = 76/156 (48.72%), Query Frame = 1
Query:   25 HPNVVLAIGRSKNDNIVVYEFV---ADTSSGSVIQAYWLDIDPKYIEANRKKGKTDDRVELGMMESSMAYGVKTKPVADNTWSVTMVAIPDKTLTLRLV---DGRPQLITSINGKDAVLTRVFVATKEG--WLKPTVLHVDFFGTDPDSGEAVTER 468
            +PN +  + R  N N  +YE        +    I  YW+    KY +    KG+ +   EL  ++   AYG+  K +  + W +  V+   K L + L+   DG+  +      K A+L R+FV  + G  W+ P V++V+  GTDP +G+ +TER
Sbjct:   48 NPNRMFYVQRDPNPNTAIYELNIKNGQLNEDEPIHPYWI----KYND----KGQHE---ELNYIQRKFAYGLNQKRLGTDKWDIRFVSY--KKLAMELMKGNDGKYHIFALFGQKQAILNRIFVRIEGGSFWI-PNVVYVELKGTDPSTGQELTER 189          
BLAST of mRNA_S-firma_F_contig10027.87.1 vs. uniprot
Match: UPI001C73DF87 (DUF4833 domain-containing protein n=1 Tax=Pontibacter sp. HSC-14F20 TaxID=2864136 RepID=UPI001C73DF87)

HSP 1 Score: 65.5 bits (158), Expect = 3.360e-10
Identity = 48/149 (32.21%), Postives = 78/149 (52.35%), Query Frame = 1
Query:   46 IGRSKNDNIVVYEFVADTSSGSV-----IQAYWLDIDPKYIEANRKKGKTDDRVELGMMESSMAYGVKTKPVADNTWSVTMVAIPDKTLTLRL-VDGRPQLITSINGKDAVLTRVFVATKEG--WLKPTVLHVDFFGTDPDSGEAVTER 468
            + R  N N VVYE +  ++ G++     I  +W+    +Y +   ++       EL  ++   AYGV TK +  + + +  V+     L LR   +GR  + T+IN K+A+L RVFV  + G  W+ P VL+V+  G D  +G+AVT R
Sbjct:   48 VQRDPNANTVVYE-LNRSAQGALNETEPIHPFWI----RYADGGERR-------ELNYVQRKFAYGVNTKKLGKDNYELKFVSYGKLALYLRKDTEGRYNVYTTINKKEAILDRVFVRIEGGTFWV-PNVLYVELSGYDAATGKAVTGR 183          
BLAST of mRNA_S-firma_F_contig10027.87.1 vs. uniprot
Match: A0A3D1A3J4_9BACT (DUF4833 domain-containing protein n=1 Tax=Elusimicrobia bacterium TaxID=2030800 RepID=A0A3D1A3J4_9BACT)

HSP 1 Score: 65.5 bits (158), Expect = 4.350e-10
Identity = 44/152 (28.95%), Postives = 78/152 (51.32%), Query Frame = 1
Query:   37 VLAIGRSKNDNIVVYEFVADTSSGSVIQ------AYWLDIDPKYIEANRKKGKTDDRVELGMMESSMAYGVKTKPVADNT-WSVTMVAIPDKTLTLRLVDGRPQLITSINGKDAVLTRVFVATKEGWLKPTVLHVDFFGTDPDSGEAVTERV 471
            +  IGR+KN N++ YE  A+ +   V+       AYW+       +  RKK        L  +E   AYG++ KP A    +++T+ A P   L ++      ++   ING+ AVL ++F+  ++  L P V +++ FG D  +GEA ++++
Sbjct:   61 LFVIGRNKNANVIHYE--ANFTPEGVLNPKEPVIAYWV---LHAGDGRRKK--------LNWLEKKKAYGIRIKPAAARDGYTLTLAAAPWMPLAVKKAGADVRVEVPINGRTAVLEKMFIQARDRLLGPKVEYIELFGKDLLTGEACSQKI 199          
BLAST of mRNA_S-firma_F_contig10027.87.1 vs. uniprot
Match: A0A2W2BDG9_9BACT (CDP-alcohol phosphatidyltransferase n=1 Tax=Taibaiella soli TaxID=1649169 RepID=A0A2W2BDG9_9BACT)

HSP 1 Score: 66.6 bits (161), Expect = 7.090e-10
Identity = 44/155 (28.39%), Postives = 77/155 (49.68%), Query Frame = 1
Query:   31 NVVLAIGRSKNDNIVVYEFVADTSSGSVIQA------YWLDIDPKYIEANRKKGKTDDRVELGMMESSMAYGVKTKPVADNTWSVTMVAIPDKTLTLRLVD-GRPQLITSINGKDAVLTRVFVATKEG-WLKPTVLHVDFFGTDPDSGEAVTERV 471
            +++  + R+ N N +VY+   +   G VI        +W+    +Y E    K       EL  ++   AYG+K   + +N W +  V+     + L L + G+  + T INGK AVL R+++    G + KP VL+++  GTD ++G+   ER+
Sbjct:  294 DMMFYVQRTPNTNTIVYQL--NYKDGGVIDKDDPIHIFWI----RYQEHGEHK-------ELNYIQRKFAYGLKVDDLGNNKWKLRFVSYDKHPMYLVLAENGKYYVFTQINGKRAVLNRIYLKIDGGSFWKPNVLYIELKGTDAETGKEAIERI 435          
BLAST of mRNA_S-firma_F_contig10027.87.1 vs. uniprot
Match: UPI001FD6F237 (DUF4833 domain-containing protein n=1 Tax=Mucilaginibacter sp. RS28 TaxID=2932774 RepID=UPI001FD6F237)

HSP 1 Score: 64.7 bits (156), Expect = 7.820e-10
Identity = 46/162 (28.40%), Postives = 80/162 (49.38%), Query Frame = 1
Query:    4 LPRYTTTHPNVVLAIGRSKNDNIVVYEFVADTS----SGSVIQAYWLDIDPKYIEANRKKGKTDDRVELGMMESSMAYGVKTKPVADNTWSVTMVAIPDKTLTL-RLVDGRPQLITSINGKDAVLTRVFVATKEG--WLKPTVLHVDFFGTDPDSGEAVTER 468
             P   T+ P +   I R  N N +VYE    +     + + +  YW+    KY E  +K+       EL  ++   AYG+  K + +  + + +V+     +TL +  DG+  +  +I  K  +L R+FV  + G  W+ P VL+V+  G+DP +G+ VT+R
Sbjct:   46 FPALPTSLPRLFY-IQRDPNTNTIVYELNVGSDGQLDNETPVHPYWI----KYNEKGQKE-------ELNFIQRKFAYGLVQKELGNGKYDIRLVSYKKYPMTLMKANDGKYHIFATIAQKQVILHRIFVRIEGGSFWV-PNVLYVEIKGSDPVTGQEVTDR 194          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10027.87.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A485KJJ8_9STRA7.050e-2138.75Aste57867_8161 protein n=1 Tax=Aphanomyces stellat... [more]
A0A024TPF8_9STRA1.400e-2039.38DUF4833 domain-containing protein n=2 Tax=Aphanomy... [more]
A0A6G0WPJ8_9STRA1.980e-2034.16DUF4833 domain-containing protein n=1 Tax=Aphanomy... [more]
A0A255ZPM2_9FLAO1.700e-1334.00DUF4833 domain-containing protein n=1 Tax=Flavobac... [more]
A0A1F9SKF0_9BACT1.060e-1129.14DUF4833 domain-containing protein n=1 Tax=Elusimic... [more]
A0A7T7JIE6_9SPHI1.910e-1029.49DUF4833 domain-containing protein n=1 Tax=Mucilagi... [more]
UPI001C73DF873.360e-1032.21DUF4833 domain-containing protein n=1 Tax=Pontibac... [more]
A0A3D1A3J4_9BACT4.350e-1028.95DUF4833 domain-containing protein n=1 Tax=Elusimic... [more]
A0A2W2BDG9_9BACT7.090e-1028.39CDP-alcohol phosphatidyltransferase n=1 Tax=Taibai... [more]
UPI001FD6F2377.820e-1028.40DUF4833 domain-containing protein n=1 Tax=Mucilagi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10027contigS-firma_F_contig10027:2677..3156 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog157072.XP_008875341.1
PFAMsDUF4833
Max annot lvl2759|Eukaryota
Evalue2.3e-21
EggNOG OGs2CDX3@1|root,2RZJE@2759|Eukaryota
DescriptionDomain of unknown function (DUF4833)
COG categoryS
Hectar predicted targeting categoryother localisation
Exons1
Model size480
Cds size480
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815526.4815395-CDS-S-firma_F_contig10027:2676..31561622815526.4815395-CDS-S-firma_F_contig10027:2676..3156Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10027 2677..3156 -
1696949389.0849073-CDS-S-firma_F_contig10027:2676..31561696949389.0849073-CDS-S-firma_F_contig10027:2676..3156Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10027 2677..3156 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10027.87.1prot_S-firma_F_contig10027.87.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10027 2677..3156 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10027.87.1

>prot_S-firma_F_contig10027.87.1 ID=prot_S-firma_F_contig10027.87.1|Name=mRNA_S-firma_F_contig10027.87.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=160bp
PLPRYTTTHPNVVLAIGRSKNDNIVVYEFVADTSSGSVIQAYWLDIDPKY
IEANRKKGKTDDRVELGMMESSMAYGVKTKPVADNTWSVTMVAIPDKTLT
LRLVDGRPQLITSINGKDAVLTRVFVATKEGWLKPTVLHVDFFGTDPDSG
EAVTERVNK*
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mRNA from alignment at S-firma_F_contig10027:2677..3156-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10027.87.1 ID=mRNA_S-firma_F_contig10027.87.1|Name=mRNA_S-firma_F_contig10027.87.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=480bp|location=Sequence derived from alignment at S-firma_F_contig10027:2677..3156- (Sphaerotrichia firma ET2_F female)
CCCCTCCCAAGGTACACCACCACCCACCCCAACGTCGTGCTCGCCATCGG GCGTTCCAAGAACGACAACATTGTGGTGTACGAGTTCGTGGCGGACACCA GCTCCGGGTCTGTCATCCAGGCGTACTGGCTGGACATTGACCCCAAGTAC ATTGAGGCCAACCGGAAGAAGGGCAAGACGGACGACCGGGTGGAGCTGGG CATGATGGAGTCCTCCATGGCATACGGCGTCAAGACCAAGCCCGTCGCGG ACAACACGTGGTCCGTCACCATGGTGGCCATCCCGGACAAGACCCTGACG CTGCGCCTGGTGGACGGCCGTCCCCAGCTCATCACGTCCATCAACGGCAA GGACGCCGTGCTGACGCGGGTGTTTGTGGCCACCAAGGAAGGCTGGCTGA AGCCCACCGTGCTGCACGTGGACTTTTTCGGCACGGATCCGGACTCCGGG GAGGCCGTCACGGAGCGCGTGAACAAGTAA
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Coding sequence (CDS) from alignment at S-firma_F_contig10027:2677..3156-

>mRNA_S-firma_F_contig10027.87.1 ID=mRNA_S-firma_F_contig10027.87.1|Name=mRNA_S-firma_F_contig10027.87.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=960bp|location=Sequence derived from alignment at S-firma_F_contig10027:2677..3156- (Sphaerotrichia firma ET2_F female)
CCCCTCCCAAGGTACACCACCACCCACCCCAACGTCGTGCTCGCCATCGG
GCGTTCCAAGAACGACAACATTGTGGTGTACGAGTTCGTGGCGGACACCA
GCTCCGGGTCTGTCATCCAGGCGTACTGGCTGGACATTGACCCCAAGTAC
ATTGAGGCCAACCGGAAGAAGGGCAAGACGGACGACCGGGTGGAGCTGGG
CATGATGGAGTCCTCCATGGCATACGGCGTCAAGACCAAGCCCGTCGCGG
ACAACACGTGGTCCGTCACCATGGTGGCCATCCCGGACAAGACCCTGACG
CTGCGCCTGGTGGACGGCCGTCCCCAGCTCATCACGTCCATCAACGGCAA
GGACGCCGTGCTGACGCGGGTGTTTGTGGCCACCAAGGAAGGCTGGCTGA
AGCCCACCGTGCTGCACGTGGACTTTTTCGGCACGGATCCGGACTCCGGG
GAGGCCGTCACGGAGCGCGTGAACAAGTAACCCCTCCCAAGGTACACCAC
CACCCACCCCAACGTCGTGCTCGCCATCGGGCGTTCCAAGAACGACAACA
TTGTGGTGTACGAGTTCGTGGCGGACACCAGCTCCGGGTCTGTCATCCAG
GCGTACTGGCTGGACATTGACCCCAAGTACATTGAGGCCAACCGGAAGAA
GGGCAAGACGGACGACCGGGTGGAGCTGGGCATGATGGAGTCCTCCATGG
CATACGGCGTCAAGACCAAGCCCGTCGCGGACAACACGTGGTCCGTCACC
ATGGTGGCCATCCCGGACAAGACCCTGACGCTGCGCCTGGTGGACGGCCG
TCCCCAGCTCATCACGTCCATCAACGGCAAGGACGCCGTGCTGACGCGGG
TGTTTGTGGCCACCAAGGAAGGCTGGCTGAAGCCCACCGTGCTGCACGTG
GACTTTTTCGGCACGGATCCGGACTCCGGGGAGGCCGTCACGGAGCGCGT
GAACAAGTAA
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