mRNA_S-firma_F_contig10025.85.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10025.85.1
Unique NamemRNA_S-firma_F_contig10025.85.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10025.85.1 vs. uniprot
Match: A0A7S3RDB8_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RDB8_EMIHU)

HSP 1 Score: 106 bits (265), Expect = 1.700e-26
Identity = 55/136 (40.44%), Postives = 68/136 (50.00%), Query Frame = 1
Query:    7 QAFDWVFHNPFCGALFRCGCTWNWAGGWDECNVHNDTGPRCPWCAATNK---FALFVINDWTVVSFMV----------AIAPRKVP---------------PAWVRLLSPAATFTVYNFVVGLLFFLATDYPYFVF 330
            + FDW  HNP+CG LFRC CTW WAGG   CNVH+ TGP+CPWC   N    +  + I D   VS MV           + P   P               P   R  +   TF +  FV+GL+F+L TDYP F+F
Sbjct:   56 RLFDWALHNPYCGLLFRCHCTWPWAGGSAHCNVHHATGPKCPWCNVRNTPLHWLAWAIKDNFTVSAMVLAYVITWLAQTVGPSASPLLPKGGIVARPSVCLPILTRATAAMLTFALLGFVLGLVFYLGTDYPCFLF 191          
BLAST of mRNA_S-firma_F_contig10025.85.1 vs. uniprot
Match: A0A813B4B0_9DINO (Hypothetical protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A813B4B0_9DINO)

HSP 1 Score: 105 bits (261), Expect = 7.090e-26
Identity = 52/110 (47.27%), Postives = 62/110 (56.36%), Query Frame = 1
Query:    7 QAFDWVFHNPFCGALFRCGCTWNWAGGWDECNVHNDTGPRCPWCAATNKFALFVINDWTVVSFMVAI---APRKVPPAWVRLLSPAATFTVYNFVVGLLFFLATDYPYFV 327
            + F  V HN FC  LFRC CTW WAGGWD CNVHN TGPRCPWC A    +     D   ++ M+ I   A  +     ++LL P  +F V   VV   F LAT YPYF+
Sbjct:   97 ETFQQVVHNKFCSFLFRCNCTWEWAGGWDNCNVHNATGPRCPWCVARANISW--TTDCLPLALMLLIFGEARARGCHLSLQLLLPVLSFLVVGTVVAFCFKLATGYPYFL 204          
BLAST of mRNA_S-firma_F_contig10025.85.1 vs. uniprot
Match: A0A7S1A5Z6_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1A5Z6_NOCSC)

HSP 1 Score: 100 bits (250), Expect = 1.650e-24
Identity = 51/117 (43.59%), Postives = 67/117 (57.26%), Query Frame = 1
Query:    7 QAFDWVFHNPFCGALFRCGCTWNWAGGWDE-----CNVHNDTGPRCPWCAATNKFA---LFVINDWTVVSFMVAIAP--RKVPPAWVRLLSPAATFTVYNFVVGLLFFLATDYPYFV 327
            +AFDWV+ NPFC   F CGC +NWAG W       CNVHN  GP+CPWC     ++   LF+ N   V   ++A     RK      R + P A + VY+FV  L+FF+ +DYPYF+
Sbjct:   46 KAFDWVWRNPFCNMCFSCGCWFNWAGWWGPGGTTYCNVHNKHGPQCPWCIIAMTWSPVWLFLGNHLVVAVCLLAWVHLLRKRVRIGCRTVLPMAVWFVYSFVSALIFFMGSDYPYFL 162          
BLAST of mRNA_S-firma_F_contig10025.85.1 vs. uniprot
Match: A0A7S1RP47_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RP47_ALECA)

HSP 1 Score: 99.8 bits (247), Expect = 7.700e-24
Identity = 52/110 (47.27%), Postives = 64/110 (58.18%), Query Frame = 1
Query:    7 QAFDWVFHNPFCGALFRCGCTWNWAGGWDECNVHNDTGPRCPWCAATNKFALFVINDWTVVSFMV-AIAPRKVPPAWVRLLS--PAATFTVYNFVVGLLFFLATDYPYFV 327
            + F  VFHN +C  LFRCGCTW+WAGGW  CNV   TGP+CPWC A +  +     D  V++ MV A +  K+      LL   P   F V  FVV  +FF+ T YPYFV
Sbjct:   87 EVFQMVFHNKWCDLLFRCGCTWDWAGGWVNCNVKG-TGPKCPWCMARHYVSW--TTDCLVIAMMVMAYSESKMRGLHPLLLPLPPVVAFLVVGFVVAGVFFIVTGYPYFV 193          
BLAST of mRNA_S-firma_F_contig10025.85.1 vs. uniprot
Match: A0A813GGM6_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813GGM6_POLGL)

HSP 1 Score: 98.6 bits (244), Expect = 2.970e-23
Identity = 47/110 (42.73%), Postives = 61/110 (55.45%), Query Frame = 1
Query:    7 QAFDWVFHNPFCGALFRCGCTWNWAGGWDECNVHNDTGPRCPWCAATNKFALFVINDWTVVSFMV-AIAPRKVPPAWVRLLS--PAATFTVYNFVVGLLFFLATDYPYFV 327
            +    VFHN +C  +FRC C W W+GGWD CNVHN +GP+C WC A  +  L    D  V++ M+ A +  K     V LL   P   F +   VVG  F +AT YPYF+
Sbjct:  105 EVLQLVFHNKYCNLIFRCNCAWEWSGGWDNCNVHNSSGPKCSWCVA--RHYLSWTTDCLVLAMMLLAFSEAKARGVHVLLLPIFPVVAFLLVGLVVGACFKVATGYPYFL 212          
BLAST of mRNA_S-firma_F_contig10025.85.1 vs. uniprot
Match: A0A0L0DC83_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DC83_THETB)

HSP 1 Score: 90.9 bits (224), Expect = 1.220e-20
Identity = 31/45 (68.89%), Postives = 38/45 (84.44%), Query Frame = 1
Query:   10 AFDWVFHNPFCGALFRCGCTWNWAGGWDECNVHNDTGPRCPWCAA 144
            AFDW+FHNP CG +F+CGCT+NWAGGW +CNVH+ + P CPWC A
Sbjct:   54 AFDWIFHNPSCGVMFQCGCTFNWAGGWAKCNVHDPSTPSCPWCIA 98          
BLAST of mRNA_S-firma_F_contig10025.85.1 vs. uniprot
Match: A0A7S3GGF4_9EUKA (Hypothetical protein n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GGF4_9EUKA)

HSP 1 Score: 89.7 bits (221), Expect = 3.530e-20
Identity = 46/103 (44.66%), Postives = 54/103 (52.43%), Query Frame = 1
Query:   22 VFHNPFCGALFRCGCTWNWAGGWDECNVHNDTGPRCPWCAATNKFALFVINDWTVVSFMVAIAPRKVPPAWVRLLSPAAT-FTVYNFVVGLLFFLATDYPYFV 327
            +F N +C  LF CGCTW+W GGWD CNVH    P CPWCAAT    L    DWT  +  VA           RL   A   F VY  V    F +AT+YP+F+
Sbjct:   63 LFENVYCDILFCCGCTWDWDGGWDHCNVHVPGLPHCPWCAATYPAVLATRLDWTTAAVYVAYFIFVQGKMISRLFWSAFWGFFVYGLVCAYAFKVATNYPFFL 165          
BLAST of mRNA_S-firma_F_contig10025.85.1 vs. uniprot
Match: A0A7S4I2Q1_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4I2Q1_9EUKA)

HSP 1 Score: 70.1 bits (170), Expect = 2.510e-13
Identity = 38/95 (40.00%), Postives = 52/95 (54.74%), Query Frame = 1
Query:   64 CTWNWAGGWDECNVHNDTGPRCPWC----AATNKFALFVINDWTVVSFMV--AIAPRKVPPAWVRLLSPAATFTVYNFVVGLLFFLATDYPYFVF 330
            CTW WAGG   CN+H+ +GP+CPWC     A    A  +   +TV   ++  A A  K      R  +  ATF  + F++GL F+L TDYP F+F
Sbjct:    2 CTWPWAGGAAGCNIHHASGPKCPWCNVKQTALKWLAPAITGKFTVALMLLVYAFAWAKHSGHLGRSAAALATFVGWGFLMGLTFYLGTDYPCFLF 96          
BLAST of mRNA_S-firma_F_contig10025.85.1 vs. uniprot
Match: A0A3M1P8K5_9BACT (Uncharacterized protein n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A3M1P8K5_9BACT)

HSP 1 Score: 66.6 bits (161), Expect = 8.940e-12
Identity = 36/105 (34.29%), Postives = 56/105 (53.33%), Query Frame = 1
Query:   22 VFHNPFCGALFRCGCTWNWAGGWDECNVHNDTGPRCPWCAATNKFALFVINDWTVVS---FMVAIAPRKVPPAWVRLLSPA-ATFTVYNFVVGLLFFLATDYPYF 324
            VF  PFCG +++CGCT+ WAG  + CN+H      CPWC   N   L V+    +++   F + +  R+   + ++LL    A F +   + G +F +  DYPYF
Sbjct:   23 VFLLPFCGFMYKCGCTYLWAGSAETCNIHLSGVAHCPWCVRRNP-VLMVLPFVVILAGQGFSIHLLSRRYHLSLLQLLVVGIAVFLLLGALNGYVFKVWDDYPYF 126          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10025.85.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A7S3RDB8_EMIHU1.700e-2640.44Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A813B4B0_9DINO7.090e-2647.27Hypothetical protein n=3 Tax=Symbiodinium TaxID=29... [more]
A0A7S1A5Z6_NOCSC1.650e-2443.59Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A7S1RP47_ALECA7.700e-2447.27Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A813GGM6_POLGL2.970e-2342.73Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A0L0DC83_THETB1.220e-2068.89Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
A0A7S3GGF4_9EUKA3.530e-2044.66Hypothetical protein n=2 Tax=Palpitomonas bilix Ta... [more]
A0A7S4I2Q1_9EUKA2.510e-1340.00Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A3M1P8K5_9BACT8.940e-1234.29Uncharacterized protein n=1 Tax=Calditrichaeota ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10025contigS-firma_F_contig10025:4606..5046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog529818.AMSG_06255T0
Max annot lvl2759|Eukaryota
Evalue2.01e-21
EggNOG OGs2CCHR@1|root,2SX87@2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Model size336
Cds size336
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815526.369962-CDS-S-firma_F_contig10025:4605..47351622815526.369962-CDS-S-firma_F_contig10025:4605..4735Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10025 4606..4735 -
1696949389.0019603-CDS-S-firma_F_contig10025:4605..47351696949389.0019603-CDS-S-firma_F_contig10025:4605..4735Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10025 4606..4735 -
1622815526.386442-CDS-S-firma_F_contig10025:4840..50461622815526.386442-CDS-S-firma_F_contig10025:4840..5046Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10025 4841..5046 -
1696949389.049487-CDS-S-firma_F_contig10025:4840..50461696949389.049487-CDS-S-firma_F_contig10025:4840..5046Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10025 4841..5046 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10025.85.1prot_S-firma_F_contig10025.85.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10025 4606..5046 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10025.85.1

>prot_S-firma_F_contig10025.85.1 ID=prot_S-firma_F_contig10025.85.1|Name=mRNA_S-firma_F_contig10025.85.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=112bp
MPQAFDWVFHNPFCGALFRCGCTWNWAGGWDECNVHNDTGPRCPWCAATN
KFALFVINDWTVVSFMVAIAPRKVPPAWVRLLSPAATFTVYNFVVGLLFF
LATDYPYFVFK*
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mRNA from alignment at S-firma_F_contig10025:4606..5046-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10025.85.1 ID=mRNA_S-firma_F_contig10025.85.1|Name=mRNA_S-firma_F_contig10025.85.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=441bp|location=Sequence derived from alignment at S-firma_F_contig10025:4606..5046- (Sphaerotrichia firma ET2_F female)
ATGCCGCAGGCCTTCGACTGGGTGTTCCACAACCCCTTCTGTGGGGCGCT GTTTCGGTGCGGCTGTACATGGAACTGGGCAGGAGGGTGGGACGAATGCA ACGTACACAACGACACTGGGCCAAGGTGCCCGTGGTGTGCTGCTACCAAC AAGTTCGCTCTCTTTGTCATCAACGACTGGACCGTGGTCAGCTTTATGGT TGCGATGTGGCTGTTCCTCGCCCGCCGCCCCCTCTTGGCCTGCATCTTCA ACCGCCCCCTGCCCGGCACGTACCTGCCACTGCCGTCGCACACTTCCCGT GCGACGGGTAGAGCCCCAAGAAAAGTGCCGCCGGCGTGGGTGAGGCTACT CAGCCCCGCTGCCACCTTCACCGTGTACAACTTTGTAGTAGGGCTGCTGT TTTTTCTAGCGACAGACTACCCGTATTTCGTCTTCAAATGA
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Coding sequence (CDS) from alignment at S-firma_F_contig10025:4606..5046-

>mRNA_S-firma_F_contig10025.85.1 ID=mRNA_S-firma_F_contig10025.85.1|Name=mRNA_S-firma_F_contig10025.85.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=672bp|location=Sequence derived from alignment at S-firma_F_contig10025:4606..5046- (Sphaerotrichia firma ET2_F female)
ATGCCGCAGGCCTTCGACTGGGTGTTCCACAACCCCTTCTGTGGGGCGCT
GTTTCGGTGCGGCTGTACATGGAACTGGGCAGGAGGGTGGGACGAATGCA
ACGTACACAACGACACTGGGCCAAGGTGCCCGTGGTGTGCTGCTACCAAC
AAGTTCGCTCTCTTTGTCATCAACGACTGGACCGTGGTCAGCTTTATGGT
TGCGATATGCCGCAGGCCTTCGACTGGGTGTTCCACAACCCCTTCTGTGG
GGCGCTGTTTCGGTGCGGCTGTACATGGAACTGGGCAGGAGGGTGGGACG
AATGCAACGTACACAACGACACTGGGCCAAGGTGCCCGTGGTGTGCTGCT
ACCAACAAGTTCGCTCTCTTTGTCATCAACGACTGGACCGTGGTCAGCTT
TATGGTTGCGATAGCCCCAAGAAAAGTGCCGCCGGCGTGGGTGAGGCTAC
TCAGCCCCGCTGCCACCTTCACCGTGTACAACTTTGTAGTAGGGCTGCTG
TTTTTTCTAGCGACAGACTACCCGTATTTCGTCTTCAAATGAAGCCCCAA
GAAAAGTGCCGCCGGCGTGGGTGAGGCTACTCAGCCCCGCTGCCACCTTC
ACCGTGTACAACTTTGTAGTAGGGCTGCTGTTTTTTCTAGCGACAGACTA
CCCGTATTTCGTCTTCAAATGA
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