mRNA_S-firma_F_contig10025.85.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10025.85.1 vs. uniprot
Match: A0A7S3RDB8_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RDB8_EMIHU) HSP 1 Score: 106 bits (265), Expect = 1.700e-26 Identity = 55/136 (40.44%), Postives = 68/136 (50.00%), Query Frame = 1
Query: 7 QAFDWVFHNPFCGALFRCGCTWNWAGGWDECNVHNDTGPRCPWCAATNK---FALFVINDWTVVSFMV----------AIAPRKVP---------------PAWVRLLSPAATFTVYNFVVGLLFFLATDYPYFVF 330
+ FDW HNP+CG LFRC CTW WAGG CNVH+ TGP+CPWC N + + I D VS MV + P P P R + TF + FV+GL+F+L TDYP F+F
Sbjct: 56 RLFDWALHNPYCGLLFRCHCTWPWAGGSAHCNVHHATGPKCPWCNVRNTPLHWLAWAIKDNFTVSAMVLAYVITWLAQTVGPSASPLLPKGGIVARPSVCLPILTRATAAMLTFALLGFVLGLVFYLGTDYPCFLF 191
BLAST of mRNA_S-firma_F_contig10025.85.1 vs. uniprot
Match: A0A813B4B0_9DINO (Hypothetical protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A813B4B0_9DINO) HSP 1 Score: 105 bits (261), Expect = 7.090e-26 Identity = 52/110 (47.27%), Postives = 62/110 (56.36%), Query Frame = 1
Query: 7 QAFDWVFHNPFCGALFRCGCTWNWAGGWDECNVHNDTGPRCPWCAATNKFALFVINDWTVVSFMVAI---APRKVPPAWVRLLSPAATFTVYNFVVGLLFFLATDYPYFV 327
+ F V HN FC LFRC CTW WAGGWD CNVHN TGPRCPWC A + D ++ M+ I A + ++LL P +F V VV F LAT YPYF+
Sbjct: 97 ETFQQVVHNKFCSFLFRCNCTWEWAGGWDNCNVHNATGPRCPWCVARANISW--TTDCLPLALMLLIFGEARARGCHLSLQLLLPVLSFLVVGTVVAFCFKLATGYPYFL 204
BLAST of mRNA_S-firma_F_contig10025.85.1 vs. uniprot
Match: A0A7S1A5Z6_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1A5Z6_NOCSC) HSP 1 Score: 100 bits (250), Expect = 1.650e-24 Identity = 51/117 (43.59%), Postives = 67/117 (57.26%), Query Frame = 1
Query: 7 QAFDWVFHNPFCGALFRCGCTWNWAGGWDE-----CNVHNDTGPRCPWCAATNKFA---LFVINDWTVVSFMVAIAP--RKVPPAWVRLLSPAATFTVYNFVVGLLFFLATDYPYFV 327
+AFDWV+ NPFC F CGC +NWAG W CNVHN GP+CPWC ++ LF+ N V ++A RK R + P A + VY+FV L+FF+ +DYPYF+
Sbjct: 46 KAFDWVWRNPFCNMCFSCGCWFNWAGWWGPGGTTYCNVHNKHGPQCPWCIIAMTWSPVWLFLGNHLVVAVCLLAWVHLLRKRVRIGCRTVLPMAVWFVYSFVSALIFFMGSDYPYFL 162
BLAST of mRNA_S-firma_F_contig10025.85.1 vs. uniprot
Match: A0A7S1RP47_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RP47_ALECA) HSP 1 Score: 99.8 bits (247), Expect = 7.700e-24 Identity = 52/110 (47.27%), Postives = 64/110 (58.18%), Query Frame = 1
Query: 7 QAFDWVFHNPFCGALFRCGCTWNWAGGWDECNVHNDTGPRCPWCAATNKFALFVINDWTVVSFMV-AIAPRKVPPAWVRLLS--PAATFTVYNFVVGLLFFLATDYPYFV 327
+ F VFHN +C LFRCGCTW+WAGGW CNV TGP+CPWC A + + D V++ MV A + K+ LL P F V FVV +FF+ T YPYFV
Sbjct: 87 EVFQMVFHNKWCDLLFRCGCTWDWAGGWVNCNVKG-TGPKCPWCMARHYVSW--TTDCLVIAMMVMAYSESKMRGLHPLLLPLPPVVAFLVVGFVVAGVFFIVTGYPYFV 193
BLAST of mRNA_S-firma_F_contig10025.85.1 vs. uniprot
Match: A0A813GGM6_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813GGM6_POLGL) HSP 1 Score: 98.6 bits (244), Expect = 2.970e-23 Identity = 47/110 (42.73%), Postives = 61/110 (55.45%), Query Frame = 1
Query: 7 QAFDWVFHNPFCGALFRCGCTWNWAGGWDECNVHNDTGPRCPWCAATNKFALFVINDWTVVSFMV-AIAPRKVPPAWVRLLS--PAATFTVYNFVVGLLFFLATDYPYFV 327
+ VFHN +C +FRC C W W+GGWD CNVHN +GP+C WC A + L D V++ M+ A + K V LL P F + VVG F +AT YPYF+
Sbjct: 105 EVLQLVFHNKYCNLIFRCNCAWEWSGGWDNCNVHNSSGPKCSWCVA--RHYLSWTTDCLVLAMMLLAFSEAKARGVHVLLLPIFPVVAFLLVGLVVGACFKVATGYPYFL 212
BLAST of mRNA_S-firma_F_contig10025.85.1 vs. uniprot
Match: A0A0L0DC83_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DC83_THETB) HSP 1 Score: 90.9 bits (224), Expect = 1.220e-20 Identity = 31/45 (68.89%), Postives = 38/45 (84.44%), Query Frame = 1
Query: 10 AFDWVFHNPFCGALFRCGCTWNWAGGWDECNVHNDTGPRCPWCAA 144
AFDW+FHNP CG +F+CGCT+NWAGGW +CNVH+ + P CPWC A
Sbjct: 54 AFDWIFHNPSCGVMFQCGCTFNWAGGWAKCNVHDPSTPSCPWCIA 98
BLAST of mRNA_S-firma_F_contig10025.85.1 vs. uniprot
Match: A0A7S3GGF4_9EUKA (Hypothetical protein n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GGF4_9EUKA) HSP 1 Score: 89.7 bits (221), Expect = 3.530e-20 Identity = 46/103 (44.66%), Postives = 54/103 (52.43%), Query Frame = 1
Query: 22 VFHNPFCGALFRCGCTWNWAGGWDECNVHNDTGPRCPWCAATNKFALFVINDWTVVSFMVAIAPRKVPPAWVRLLSPAAT-FTVYNFVVGLLFFLATDYPYFV 327
+F N +C LF CGCTW+W GGWD CNVH P CPWCAAT L DWT + VA RL A F VY V F +AT+YP+F+
Sbjct: 63 LFENVYCDILFCCGCTWDWDGGWDHCNVHVPGLPHCPWCAATYPAVLATRLDWTTAAVYVAYFIFVQGKMISRLFWSAFWGFFVYGLVCAYAFKVATNYPFFL 165
BLAST of mRNA_S-firma_F_contig10025.85.1 vs. uniprot
Match: A0A7S4I2Q1_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4I2Q1_9EUKA) HSP 1 Score: 70.1 bits (170), Expect = 2.510e-13 Identity = 38/95 (40.00%), Postives = 52/95 (54.74%), Query Frame = 1
Query: 64 CTWNWAGGWDECNVHNDTGPRCPWC----AATNKFALFVINDWTVVSFMV--AIAPRKVPPAWVRLLSPAATFTVYNFVVGLLFFLATDYPYFVF 330
CTW WAGG CN+H+ +GP+CPWC A A + +TV ++ A A K R + ATF + F++GL F+L TDYP F+F
Sbjct: 2 CTWPWAGGAAGCNIHHASGPKCPWCNVKQTALKWLAPAITGKFTVALMLLVYAFAWAKHSGHLGRSAAALATFVGWGFLMGLTFYLGTDYPCFLF 96
BLAST of mRNA_S-firma_F_contig10025.85.1 vs. uniprot
Match: A0A3M1P8K5_9BACT (Uncharacterized protein n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A3M1P8K5_9BACT) HSP 1 Score: 66.6 bits (161), Expect = 8.940e-12 Identity = 36/105 (34.29%), Postives = 56/105 (53.33%), Query Frame = 1
Query: 22 VFHNPFCGALFRCGCTWNWAGGWDECNVHNDTGPRCPWCAATNKFALFVINDWTVVS---FMVAIAPRKVPPAWVRLLSPA-ATFTVYNFVVGLLFFLATDYPYF 324
VF PFCG +++CGCT+ WAG + CN+H CPWC N L V+ +++ F + + R+ + ++LL A F + + G +F + DYPYF
Sbjct: 23 VFLLPFCGFMYKCGCTYLWAGSAETCNIHLSGVAHCPWCVRRNP-VLMVLPFVVILAGQGFSIHLLSRRYHLSLLQLLVVGIAVFLLLGALNGYVFKVWDDYPYF 126 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10025.85.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10025.85.1 >prot_S-firma_F_contig10025.85.1 ID=prot_S-firma_F_contig10025.85.1|Name=mRNA_S-firma_F_contig10025.85.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=112bp MPQAFDWVFHNPFCGALFRCGCTWNWAGGWDECNVHNDTGPRCPWCAATNback to top mRNA from alignment at S-firma_F_contig10025:4606..5046- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10025.85.1 ID=mRNA_S-firma_F_contig10025.85.1|Name=mRNA_S-firma_F_contig10025.85.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=441bp|location=Sequence derived from alignment at S-firma_F_contig10025:4606..5046- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10025:4606..5046- >mRNA_S-firma_F_contig10025.85.1 ID=mRNA_S-firma_F_contig10025.85.1|Name=mRNA_S-firma_F_contig10025.85.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=672bp|location=Sequence derived from alignment at S-firma_F_contig10025:4606..5046- (Sphaerotrichia firma ET2_F female)back to top |