mRNA_S-firma_F_contig10021.81.1 (mRNA) Sphaerotrichia firma ET2_F female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10021.81.1 vs. uniprot
Match: A0A6H5JZF2_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZF2_9PHAE) HSP 1 Score: 442 bits (1138), Expect = 2.370e-148 Identity = 234/288 (81.25%), Postives = 247/288 (85.76%), Query Frame = 1 Query: 1 PLADEPPSRSISHTPPLAATG---GSRPTFDPLEDFSQDTSNLDATDRCLAAACSLLQFQIAEVWTYTGDFSAAEGKPIEPMCLHVYVRPATIESFKALKLQGAWRDDNIKAKHELSPDLVGEARKQERLLWYTSMHPDTPLHSSLPLNTAVALPISLSVLRRDLCFVFFAEHDVNRQDTAVTVLTQLSKAAGVAISASFPAYAED---GSQPRKSRTPSNMSESAASPEAPLEPAPLNLDVRWDQLTHVEFMVNGSRCTIYTAFYQTTPVVVKVMRKDVQDKDIVRQ 846
PL D P SRSISHTPPL T G R TFDPLEDFS DTSNLDATD CLAA CSLLQFQIAEVWTYTGD SAAEGKP+EPMCLHVY RPATIESFK + GA RDDN A+H LSP LV EARKQERLLW+TSMHPDTPLH+SLPLNTAVALPISLSVLRRDLCFVFFAEHDV RQDTAV+VLT+LSKAAGVAISASFPAYA++ GS RKS TPS MSE+AASP P+ APLNLDVRW+QLT VEFMVNGSRCTIYTAFY TTPVVVKVMRKDVQD+D VRQ
Sbjct: 40 PLQDAPLSRSISHTPPLPPTDSQDGGRTTFDPLEDFSHDTSNLDATDGCLAAVCSLLQFQIAEVWTYTGDISAAEGKPLEPMCLHVYARPATIESFK--DVHGALRDDNTSARHSLSPGLVDEARKQERLLWFTSMHPDTPLHTSLPLNTAVALPISLSVLRRDLCFVFFAEHDVIRQDTAVSVLTELSKAAGVAISASFPAYAKEDGSGSPTRKSGTPSIMSENAASPNPPVGDAPLNLDVRWEQLTTVEFMVNGSRCTIYTAFYGTTPVVVKVMRKDVQDRDTVRQ 325
BLAST of mRNA_S-firma_F_contig10021.81.1 vs. uniprot
Match: A0A836C8Q0_9STRA (Serine/threonine-protein kinase CTR1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Q0_9STRA) HSP 1 Score: 226 bits (575), Expect = 9.310e-65 Identity = 121/250 (48.40%), Postives = 161/250 (64.40%), Query Frame = 1 Query: 97 FSQDTSNLDATDRCLAAACSLLQFQIAEVWTYTGDFSAAEGKPIEPMCLHVYVRPATIESFKALKLQGAWRDDNIKAKHELSPDLVGEARKQERLLWYTSMHPDTPLHSSLPLNTAVALPISLSVLRRDLCFVFFAEHDVNRQDTAVTVLTQLSKAAGVAISASFPAYAEDGS--QPRKSRTPSNMSESAASPEAPLEPAPLNLDVRWDQLTHVEFMVNGSRCTIYTAFYQTTPVVVKVMRKDVQDKDIV 840
FS D N+ A DRCL AAC+ L F + EVW++ G+ GK +EP+CL Y RPATIE++ + +++ +++ +H LSP LV +AR+ E LW+TS HPDTP+H LPLNTAVA+P+SL +D+ VFF+ DV RQ+TA+ +LT LS+AA A SFPA+ D + QP +R E EP NLD+RWD L EF+VNGSRCTIYTAFY+ PV VK++RKD+ DK V
Sbjct: 4 FSMDAMNMSAVDRCLDAACASLGFDLGEVWSFCGEVQ--RGKALEPVCLRAYARPATIETYGS-RVKLGLDHESVSQRHSLSPILVKQARQNEAPLWFTSSHPDTPMHEDLPLNTAVAIPLSLDATHKDMVAVFFSMDDVQRQETALALLTALSRAACTACMRSFPAFDSDAAHQQPPLARL-----------EDFTEP---NLDMRWDSLQDAEFLVNGSRCTIYTAFYKNLPVAVKLVRKDIPDKKTV 236
BLAST of mRNA_S-firma_F_contig10021.81.1 vs. uniprot
Match: A0A835Z8J1_9STRA (Serine/threonine-protein kinase CTR1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8J1_9STRA) HSP 1 Score: 202 bits (514), Expect = 6.140e-56 Identity = 119/266 (44.74%), Postives = 160/266 (60.15%), Query Frame = 1 Query: 73 PTFDPLEDFSQDTSNLDATDRCLAAACSLLQFQIAEVWTYTGDFSAAE--GKP-IEPMCLHVYVRPATIESFKALKLQGAWRDDNIKAKHELSPDLVGEARKQERLLWYTSMHPDTPLHSSLPLNTAVALPISLSVLRRDLCFVFFAEHDVNRQDTAVTVLTQLSKAAGVAISASF----PAYAEDGSQPRKSRTPSNMSESAASPEAPLEPAP-LNLDVRWDQLTHVEFMVNGSRCTIYTAFYQTTPVVVKVMRKDVQDKDIVRQ 846
P+ P DF NL+A DRCLAAA L F IAE+WT+ D + G+P + P CL+VY +PAT+E+++A +L G W + + +H+LSP L AR+ E LW+TS DTPLH+ LPLNTAV LPI L +R+D C VFF+ DV R TA+ L ++KAA +AIS F A +D S ++ + L P LN++V+W +L+ VEF+VNGSRCTIYTA Y VVK++RKD D IVR+
Sbjct: 16 PSPSPARDFRASEKNLEAADRCLAAAAYTLNFDIAELWTFVPDPAGNHKAGEPAVTPSCLYVYAQPATLENYRA-RLVGIWNNGEREKRHKLSPGLCERARESECPLWFTSKDHDTPLHADLPLNTAVVLPIRLESMRKDCCVVFFSTADVQRDRTALDFLVHIAKAAVLAISEDFGDHSDAKEDDVSDIGLLCNAHFVTVHLNNVSVKLHPGEQLNMEVQWSELSEVEFLVNGSRCTIYTATYNHQACVVKLLRKDAVDAAIVRR 280
BLAST of mRNA_S-firma_F_contig10021.81.1 vs. uniprot
Match: A0A835Z8G5_9STRA (Serine/threonine-protein kinase CTR1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G5_9STRA) HSP 1 Score: 199 bits (505), Expect = 3.870e-54 Identity = 118/303 (38.94%), Postives = 161/303 (53.14%), Query Frame = 1 Query: 85 PLEDFSQDTSNLDATDRCLAAACSLLQFQIAEVWTYT----GDFSAAEGKPIEPMCLHVYVRPATIESFKALKLQGAWRDDNIKAKHELSPDLVGEARKQERLLWYTSMHPDTPLHSSLPLNTAVALPISLSVLRRDLCFVFFAEHDVNRQDTAVTVLTQLSKAAGVAISASFPAYAEDGSQPRKSRTPSNMSESAASPEAPLEPAPL---------------------------------------------NLDVRWDQLTHVEFMVNGSRCTIYTAFYQTTPVVVKVMRKDVQDKDIVRQ 846
P DF + NL A DRCLAAA L F IAE+WT+ G + E P++P CLHVY +PAT+E+++A KL G W + + +H+LSP L AR+ E LW+TS DTPLH+ LPLNTAV +P+ L +R+D C V+F+ DV+R TA+ L +SKAA +++S +DG Q +S +P + A P PL N V+W +L+ VEF+VNGSRCTIYTA Y+ VVK++RKDV D +VR+
Sbjct: 23 PSRDFIKSERNLAAADRCLAAAAYSLNFDIAELWTFVPDPAGKVKSGEPPPVKPACLHVYAQPATLENYRA-KLVGIWNNGEREKRHKLSPGLCERAREHECPLWFTSTDHDTPLHADLPLNTAVVVPVRLESMRKDCCVVYFSTSDVHRDRTALDFLMHISKAAILSVSGILGDAPQDG-QKEESESPHAARKRGPHAPAHTHPCPLSVTACNCRTXXXXXXQREVARKLNTLNMITKLNSVSVKMHPGEQLNTQVKWAELSDVEFLVNGSRCTIYTATYREAACVVKLLRKDVPDAALVRR 323
BLAST of mRNA_S-firma_F_contig10021.81.1 vs. uniprot
Match: A0A6H5JUQ3_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUQ3_9PHAE) HSP 1 Score: 126 bits (316), Expect = 5.050e-28 Identity = 101/305 (33.11%), Postives = 143/305 (46.89%), Query Frame = 1 Query: 130 DRCLAAACSLLQFQIAEVWTYTGDFS-------------------AAEGKPIEPMCLHVYVRPATIESFKALKLQGAWR----DDNIKAKHELSPDLVGEARKQERLLWYTSMHPDTPLHSSLPLNTAVALPISLSV-------LRRDLCFVFFAEHDVNRQDT-AVTVLTQLSKAAGVAISASFPAYAEDGSQPRKSRTPSNMS----ESAASPEAPLEPAP--------LNLDVRWDQLTHVEFMVNGSRCTIYTAFYQTTPVVVKVMRKDVQDKDIVR---QVRATLC*NSWLDNFVALLRA 906
D CL+ L+F IAE+W + D S AA G ++ C HVY PAT++++ ++ G W D H LSP L +AR E LW+ S P LH SLP+NTAV LP+ ++V + D F ++ ++ ++ L +SKAA + E + K + P ++ E +A E L+ P LN V W +L V+F+VNGSRCTIYTA Y+ VVVK+MRKDVQD +VR ++ L +N V LL A
Sbjct: 27 DTCLSVGALSLKFDIAELWRFGPDSSKSGSDKAREVRGGAGSASGAAGGGTVKAHCEHVYTMPATLKTYSG-RIMGMWNSGFDDSRAPQHHVLSPQLCEQARASECPLWFKST-PARKLHPSLPINTAVVLPVHVNVDSDDEDKMTDDTYIAVFLSLTLHERNLLSLDFLEHISKAATTL-------FLEQKEKKIKMKLPCGVAKGHPEKSAFVETHLQDVPVLAHPGGMLNTSVAWAELEDVDFLVNGSRCTIYTAVYKDQQVVVKLMRKDVQDAALVRDELELELALLRRVRHENIVRLLGA 322
BLAST of mRNA_S-firma_F_contig10021.81.1 vs. uniprot
Match: A0A7S2S189_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S189_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 2.330e-9 Identity = 76/297 (25.59%), Postives = 132/297 (44.44%), Query Frame = 1 Query: 124 ATDRCLAAACSLLQFQIAEVWTYTGDFSAAEGKPIEPMCLHVYVRPATIESFKALKL----QGAWRDDNIKAKHELSPDLVGEARKQERLLWYTSM--HPDTPLHSSLP-LNTAVALPISLSVLRRDLCFVFFAEHDVNRQDTAVTVLTQLS-KAAGVAI-SASFPAYAEDGSQPRK-SRTP--------------SNMSESA---------------ASPEAPLEPAPLN-----------LDVRWDQLTHVEFMVNGSRCTIYTAFYQTTPVVVKVMRKDVQDKDI-VRQVRATL 861
A + L+AAC + F IAE+W TG P + +++P ++++ +L GA + I H LSP L A++ + ++W TS+ H L S+ + TAVA+P+ + ++ ++F+ AV L +S AA V + S + ++ +G + + TP SN+S+S + P P EP P + LD+RW L++VE++ +G I+TA PVVVK ++ + QD + + ++ A L
Sbjct: 142 AVETVLSAACETMGFDIAELWLRTG--------PKTHQLTNTHLQPTSVDNSVRKELVDVYYGARSSEGI---HTLSPALCKRAKEAQDVVWVTSLTEHGAAALRCSISDVRTAVAVPVCHKQSQTNMTILYFSVQRTAMNPLAVEFLAHMSLAAANVCVNSLAVDIFSVEGRENNNVNHTPPVTTKNIARQPVPKSNLSQSEHPLPRHHSILRKPRLSIPNVP-EPIPTSKIPRFSVTGTSLDLRWSNLSNVEYLTDGGNSWIHTAVLNRHPVVVKWLKPECQDLAVAINEIEAEL 426 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10021.81.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10021.81.1 >prot_S-firma_F_contig10021.81.1 ID=prot_S-firma_F_contig10021.81.1|Name=mRNA_S-firma_F_contig10021.81.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=211bp MCLHVYVRPATIESFKALKLQGAWRDDNIKAKHELSPDLVGEARKQERLLback to top mRNA from alignment at S-firma_F_contig10021:1415..5365+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10021.81.1 ID=mRNA_S-firma_F_contig10021.81.1|Name=mRNA_S-firma_F_contig10021.81.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3951bp|location=Sequence derived from alignment at S-firma_F_contig10021:1415..5365+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10021:1415..5365+ >mRNA_S-firma_F_contig10021.81.1 ID=mRNA_S-firma_F_contig10021.81.1|Name=mRNA_S-firma_F_contig10021.81.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1266bp|location=Sequence derived from alignment at S-firma_F_contig10021:1415..5365+ (Sphaerotrichia firma ET2_F female)back to top |