mRNA_S-firma_F_contig10018.79.1 (mRNA) Sphaerotrichia firma ET2_F female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10018.79.1 vs. uniprot
Match: A0A6H5KB05_9PHAE (UDENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB05_9PHAE) HSP 1 Score: 326 bits (835), Expect = 7.550e-99 Identity = 177/241 (73.44%), Postives = 188/241 (78.01%), Query Frame = 2 Query: 35 VPLPVPGVCAMSANAFGKLFAACPEPEFSLPGVRELPALSFPLGLLLR----------SLRPKGVLQLFAAILQEGRILLHSTKPALLAAVAEGVFALMYPLQWPYAYVPVLPNCLIEHVESPQPFILGVHTDWLSDISPDALEE-----------LIIVDCDLGTVDGPEMEQLPPPVRRSLTKAVRAVLHGNLGNLDAPVRLSKPELSAAXXXXXXXXXXXXXXXNTSSSRRAGKGGAL 694
VPLPVPGVC MS AFG+ F+ACPEPEF+LPG+RELPALSFPLGLLLR SLRPKGVL+LFAA+LQEGRILLHS KPALLAAVAEGVFALMYPLQWPYAYVPVLPNCLIEHVESPQPFILGVHTDWLSDI+PDAL E LIIVDCDLG VDG MEQLPPPVRRSLTKAVRAVLHGNLG LDAP RLSKPE +A ++SSS A K G+L
Sbjct: 575 VPLPVPGVCTMSIKAFGERFSACPEPEFALPGIRELPALSFPLGLLLRQGGSVFEDLASLRPKGVLELFAAVLQEGRILLHSAKPALLAAVAEGVFALMYPLQWPYAYVPVLPNCLIEHVESPQPFILGVHTDWLSDIAPDALGEVTHHMMLXXXXLIIVDCDLGIVDGQGMEQLPPPVRRSLTKAVRAVLHGNLGGLDAPARLSKPEAAAGAKATGSKVAKGRAPPSSSSS--AQKSGSL 813
BLAST of mRNA_S-firma_F_contig10018.79.1 vs. uniprot
Match: D8LB83_ECTSI (WD-40 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB83_ECTSI) HSP 1 Score: 266 bits (679), Expect = 6.750e-78 Identity = 133/146 (91.10%), Postives = 139/146 (95.21%), Query Frame = 2 Query: 170 LLRSLRPKGVLQLFAAILQEGRILLHSTKPALLAAVAEGVFALMYPLQWPYAYVPVLPNCLIEHVESPQPFILGVHTDWLSDISPDALEELIIVDCDLGTVDGPEMEQLPPPVRRSLTKAVRAVLHGNLGNLDAPVRLSKPELSAA 607
++RSLRPKGVL+LFAAILQEGRILLHS KPALLAAVAEGVFALMYPLQWPYAYVPVLPNCLIEHVESPQPFILGVHTDWLSDI+PDALEELIIVDCDLG VDG MEQLPPPVRRSLTKAVRAVLHGNLG LDAP RLSKPE ++A
Sbjct: 603 MVRSLRPKGVLELFAAILQEGRILLHSAKPALLAAVAEGVFALMYPLQWPYAYVPVLPNCLIEHVESPQPFILGVHTDWLSDIAPDALEELIIVDCDLGIVDGQGMEQLPPPVRRSLTKAVRAVLHGNLGGLDAPARLSKPEAASA 748
BLAST of mRNA_S-firma_F_contig10018.79.1 vs. uniprot
Match: A0A4D9DBD8_9STRA (UDENN domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DBD8_9STRA) HSP 1 Score: 128 bits (322), Expect = 4.380e-30 Identity = 79/204 (38.73%), Postives = 115/204 (56.37%), Query Frame = 2 Query: 2 LDAAVFQLTLEVPLPVPGVCAMSANAFGKLFAACPEPEFSLPGVRELPALSFPLGLLLRSLRPKGVLQLFAAILQEGRILLHSTKPALLAAVAEGVFALMYPLQWPYAYVPVLPNCLIEHVESPQPFILGVHTDWLSDISPDALEELIIVDCDLGTVDGPEME----QLPPPVRRSLTKAVRAVLHGNLGNLD-APVRLSKPEL 598
L + QLTLEVPLP+PG + + G+ L G LP+L +PL LR+ + VL L AA L E ++LLHS ++L +AE + +L+YPLQW + Y+ LP L+ VE+P +ILGVHT+WL+D+ D+L++++ VDCD G V P PP V L + +R ++ L LD A R+S +L
Sbjct: 538 LRTHIVQLTLEVPLPIPGALGVQFDFLGRPITC------RLAGPGALPSLCYPLSPFLRTFSARNVLALVAAALTESKVLLHSHDLSVLPVMAESLLSLIYPLQWQHPYLVPLPRELLVVVETPTNYILGVHTEWLADVPRDSLKDVVCVDCDSGAVRLPPRPFNPPSFPPSVLYPLLRRLRGTVYPMLTRLDSASSRVSLDDL 735
BLAST of mRNA_S-firma_F_contig10018.79.1 vs. uniprot
Match: A0A7S2RME7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RME7_9STRA) HSP 1 Score: 102 bits (255), Expect = 3.090e-21 Identity = 58/145 (40.00%), Postives = 86/145 (59.31%), Query Frame = 2 Query: 38 PLPVPGVCAMSANAFGKLFAACPEPEFSLPGVRELPALSFPLGLLLRSLRPKGVLQLFAAILQEGRILLHSTKPALLAAVAEGVFALMYPLQWPYAYVPVLPNCLIEHVESPQPFILGVHTDWLSDISPDALEELIIVDCDLGTV 472
PLPV ++ +AF + C S+ +PA +F L L+ L ++L + L E ++L HS A LA V E V LMYPLQW + YVPVLP ++E +ESPQPFI+G+H+DWL ++ P+ LE++++ D D G +
Sbjct: 234 PLPVTDRMMVTFHAFERQEIQC-----SVCAPYGMPASTFGLPEPLKCLGSDVGVELLSYALGERKLLFHSADSAALAPVTEAVCTLMYPLQWIHTYVPVLPRSMLEVLESPQPFIIGIHSDWLPEVRPEVLEDILVFDVDRGVL 373
BLAST of mRNA_S-firma_F_contig10018.79.1 vs. uniprot
Match: A0A151Z4L2_9MYCE (WD40 repeat-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z4L2_9MYCE) HSP 1 Score: 100 bits (250), Expect = 1.590e-20 Identity = 61/197 (30.96%), Postives = 107/197 (54.31%), Query Frame = 2 Query: 2 LDAAVFQLTLEVPLPVPGVCAMSANAFGKLFAACPEPEFSLPGVRELPALSFPLGLLLRSLRPKGVLQLFAAILQEGRILLHSTKPALLAAVAEGVFALMYPLQWPYAYVPVLPNCLIEHVESPQPFILGVHTDWLSDISPDA--LEELIIVDCDLGTVDGPEME----QLPPPVRRSLTKAVRAVLHGNLGNLDAP 574
++ + L E+PLP P + ++ G+ A P + LP P +L + L K +L L +++ E ++++ S++ +LL + E +++L+YPLQ+P+ YVP+LP L+E++ SP PFI+GVH + +I + L E+++VD D TV P + QLP + L +R V+H + + D P
Sbjct: 627 IERYIHHLVQELPLPQPSMNTITYTLGGQNLIALKRPSECM-----LPMSDLPFSILFKCLDIKNLLALVKSVILEEKVIIISSQYSLLTCITEILYSLIYPLQYPHVYVPILPELLLEYIYSPFPFIMGVHRSYAQNILSEESLLSEIVLVDLDNNTVHLPPTQSKDVQLPEKEVQQLINQLRKVVHYEILSSDLP 818
BLAST of mRNA_S-firma_F_contig10018.79.1 vs. uniprot
Match: A0A8J4PTI3_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PTI3_9MYCE) HSP 1 Score: 100 bits (249), Expect = 2.160e-20 Identity = 66/197 (33.50%), Postives = 104/197 (52.79%), Query Frame = 2 Query: 2 LDAAVFQLTLEVPLPVPGVCAMSANAFGKLFAACPEPEFSLPGVRELPALSFPLGLLLRSLRPKGVLQLFAAILQEGRILLHSTKPALLAAVAEGVFALMYPLQWPYAYVPVLPNCLIEHVESPQPFILGVHTDWLSDI--SPDALEELIIVDCDLGTVDGPEME----QLPPPVRRSLTKAVRAVLHGNLGNLDAP 574
++ ++ L E+PLP PG +S N G+ P L LP +L + L + VL + IL E +I++ S++ +LL ++E + +L+YPLQ+P+ YVP+LP L+E+V SP PFI+GVH + S I + L E+++VD D TV P + QLP L +R V+ + + D P
Sbjct: 685 IERYIYNLVQEIPLPQPGANIVSFNLGGQTQIPLKRPSDCL-----LPTPDLSFNILFKCLDIRNVLLVLKCILLEEKIIIISSQYSLLTYISEIISSLLYPLQFPHVYVPILPELLLEYVYSPFPFIMGVHKSYSSTILNEENLLSEIVVVDLDNNTVHIPPTDTKDIQLPERETAQLINQLRRVVQFEILSADLP 876
BLAST of mRNA_S-firma_F_contig10018.79.1 vs. uniprot
Match: A0A7S3RYV7_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RYV7_EMIHU) HSP 1 Score: 95.5 bits (236), Expect = 7.750e-20 Identity = 60/173 (34.68%), Postives = 94/173 (54.34%), Query Frame = 2 Query: 2 LDAAVFQLTLEVPLPVPGVCAMSANAFGKLFAACPEPEFSLPGV-RELPALSFPLGLLLRSLRPKGVLQLFAAILQEGRILLHSTKPALLAAVAEGVFALMYPLQWPYAYVPVLPNCLIEHVESPQPFILGVHTDWLSD----ISPDALEELIIVDCDLGTVDGPEM-EQLPP 502
++A V L E P+P PG ++ G+ + F P + RELP PLG LL +L P+ VL LF L E R+L ++ + L A AE + +L++PL+W Y+P+LP L+E ++SP PF++G+H + + P + + + D GT+ P + EQLPP
Sbjct: 51 VEALVSSLLWEAPMPAPGHISVQLGLGGE------QMTFERPDLSRELPEPPLPLGALLHALEPRQVLSLFRGALFEHRVLFVASNLSQLTAAAEALLSLLWPLRWQGIYIPLLPGLLVEVLQSPVPFVIGIHASTFASACRALPPVLPPDAFVANLDEGTLLVPPLDEQLPP 217
BLAST of mRNA_S-firma_F_contig10018.79.1 vs. uniprot
Match: R1DGT0_EMIHU (UDENN domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DGT0_EMIHU) HSP 1 Score: 95.5 bits (236), Expect = 1.030e-18 Identity = 60/173 (34.68%), Postives = 94/173 (54.34%), Query Frame = 2 Query: 2 LDAAVFQLTLEVPLPVPGVCAMSANAFGKLFAACPEPEFSLPGV-RELPALSFPLGLLLRSLRPKGVLQLFAAILQEGRILLHSTKPALLAAVAEGVFALMYPLQWPYAYVPVLPNCLIEHVESPQPFILGVHTDWLSD----ISPDALEELIIVDCDLGTVDGPEM-EQLPP 502
++A V L E P+P PG ++ G+ + F P + RELP PLG LL +L P+ VL LF L E R+L ++ + L A AE + +L++PL+W Y+P+LP L+E ++SP PF++G+H + + P + + + D GT+ P + EQLPP
Sbjct: 323 VEALVSSLLWEAPMPAPGHISVQLGLGGE------QMTFERPDLSRELPEPPLPLGALLHALEPRQVLSLFRGALFEHRVLFVASNLSQLTAAAEALLSLLWPLRWQGIYIPLLPGLLVEVLQSPVPFVIGIHASTFASACRALPPVLPPDAFVANLDEGTLLVPPLDEQLPP 489
BLAST of mRNA_S-firma_F_contig10018.79.1 vs. uniprot
Match: R1DQA3_EMIHU (UDENN domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DQA3_EMIHU) HSP 1 Score: 95.5 bits (236), Expect = 1.050e-18 Identity = 60/173 (34.68%), Postives = 94/173 (54.34%), Query Frame = 2 Query: 2 LDAAVFQLTLEVPLPVPGVCAMSANAFGKLFAACPEPEFSLPGV-RELPALSFPLGLLLRSLRPKGVLQLFAAILQEGRILLHSTKPALLAAVAEGVFALMYPLQWPYAYVPVLPNCLIEHVESPQPFILGVHTDWLSD----ISPDALEELIIVDCDLGTVDGPEM-EQLPP 502
++A V L E P+P PG ++ G+ + F P + RELP PLG LL +L P+ VL LF L E R+L ++ + L A AE + +L++PL+W Y+P+LP L+E ++SP PF++G+H + + P + + + D GT+ P + EQLPP
Sbjct: 262 VEALVSSLLWEAPMPAPGHISVQLGLGGE------QMTFERPDLSRELPEPPLPLGALLHALEPRQVLSLFRGALFEHRVLFVASNLSQLTAAAEALLSLLWPLRWQGIYIPLLPGLLVEVLQSPVPFVIGIHASTFASACRALPPVLPPDAFVANLDEGTLLVPPLDEQLPP 428
BLAST of mRNA_S-firma_F_contig10018.79.1 vs. uniprot
Match: A0A8B9R8E2_ASTMX (SET binding factor 2 n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9R8E2_ASTMX) HSP 1 Score: 95.1 bits (235), Expect = 1.500e-18 Identity = 57/142 (40.14%), Postives = 86/142 (60.56%), Query Frame = 2 Query: 140 LPALSFPLGLLLRSLRPKGVLQLFAAILQEGRILLHSTKPALLAAVAEGVFALMYPLQWPYAYVPVLPNCLIEHVESPQPFILGVHTDWLSDISPDALEELIIVDCDLGTVDGPE---MEQLPPPVRRSLTKAVRAVLHGNL 556
LP + + LL + L + VL LF A+L E ++L HST L + ALM+PL++ Y Y+P+LP+ L+E + SP PFI+GVH+ + S+I L ++II D D GT+ PE + QLP P+ ++ A+ VLH +L
Sbjct: 107 LPVTTKSVALLFQQLGIQNVLSLFCAVLTEHKVLFHSTSYQRLEEACRALEALMFPLKYSYPYIPILPSRLLEMLNSPTPFIMGVHSMFQSEIHE--LLDVIIADLDGGTIKIPECIHLSQLPEPLLQNTQNALSVVLHPDL 246 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10018.79.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10018.79.1 >prot_S-firma_F_contig10018.79.1 ID=prot_S-firma_F_contig10018.79.1|Name=mRNA_S-firma_F_contig10018.79.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=251bp ARRGRVPADPRGPAAGAGRVRDVRQRLREAVRGVSGARVLPAGGSGAAGAback to top mRNA from alignment at S-firma_F_contig10018:324..3572- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10018.79.1 ID=mRNA_S-firma_F_contig10018.79.1|Name=mRNA_S-firma_F_contig10018.79.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3249bp|location=Sequence derived from alignment at S-firma_F_contig10018:324..3572- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10018:324..3572- >mRNA_S-firma_F_contig10018.79.1 ID=mRNA_S-firma_F_contig10018.79.1|Name=mRNA_S-firma_F_contig10018.79.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1506bp|location=Sequence derived from alignment at S-firma_F_contig10018:324..3572- (Sphaerotrichia firma ET2_F female)back to top |