Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 316 |
| Cds size | 315 |
| Stop | 1 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815525.3601396-CDS-S-firma_F_contig10016:3223..3291 | 1622815525.3601396-CDS-S-firma_F_contig10016:3223..3291 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10016 3224..3291 - |
| 1696949388.039304-CDS-S-firma_F_contig10016:3223..3291 | 1696949388.039304-CDS-S-firma_F_contig10016:3223..3291 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10016 3224..3291 - |
| 1622815525.3750935-CDS-S-firma_F_contig10016:3540..3787 | 1622815525.3750935-CDS-S-firma_F_contig10016:3540..3787 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10016 3541..3787 - |
| 1696949388.0530772-CDS-S-firma_F_contig10016:3540..3787 | 1696949388.0530772-CDS-S-firma_F_contig10016:3540..3787 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10016 3541..3787 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10016.77.1 >prot_S-firma_F_contig10016.77.1 ID=prot_S-firma_F_contig10016.77.1|Name=mRNA_S-firma_F_contig10016.77.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=105bp
STANERRRHSSWVSRENLPSGCSRGCRTASASCAATRSATRCCSCSAIRT
MATAPRARGREATPGARENVGLRLVSTRPSDEAHEGTGTQRAQGEAPPVV
GEEW* back to topmRNA from alignment at S-firma_F_contig10016:3224..3787- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-firma_F_contig10016.77.1 ID=mRNA_S-firma_F_contig10016.77.1|Name=mRNA_S-firma_F_contig10016.77.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=564bp|location=Sequence derived from alignment at S-firma_F_contig10016:3224..3787- (Sphaerotrichia firma ET2_F female)
TCAACAGCCAATGAAAGGCGCCGACACAGCAGTTGGGTCTCCCGCGAGAA
CCTCCCTTCTGGTTGCTCACGCGGTTGCCGTACGGCCTCGGCCTCCTGCG
CGGCGACACGCTCCGCCACCCGCTGCTGCTCGTGTTCGGCAATCCGCACC
ATGGCGACGGCTCCGAGAGCGAGAGGACGCGAAGCAACCCCCGGAGCTAG
GGAAAACGTGGGGCTTCGACTCGTCTCGACACGACCCAGCGACGAGGGTG
AGCATGGCGTACTATTTGCTGTCGTTCTTGCACTTGCATGCATCCGCCCG
TTCCCTCGTGGCAGAGAACGAACGTTTCCGCCCTTTCAGTCCACGACGTT
TCGCTTGCTGGCGAGACTGTCAATTTGCCGGAGGACGGTGTCAAGCCCTT
GTCCTATTTGCGTCAGCTGTTGTTGATGTTCTCCCCCTCCCGCGCCTCCC
GAATCTCTCATTGTTGCGCACGTGTGTGTGTGATTTCACCCGGCAGCCCA
CGAAGGGACCGGCACCCAACGAGCGCAAGGAGAAGCCCCGCCGGTCGTGG
GGGAGGAGTGGTGA back to topCoding sequence (CDS) from alignment at S-firma_F_contig10016:3224..3787- >mRNA_S-firma_F_contig10016.77.1 ID=mRNA_S-firma_F_contig10016.77.1|Name=mRNA_S-firma_F_contig10016.77.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=630bp|location=Sequence derived from alignment at S-firma_F_contig10016:3224..3787- (Sphaerotrichia firma ET2_F female)
TCAACAGCCAATGAAAGGCGCCGACACAGCAGTTGGGTCTCCCGCGAGAA
CCTCCCTTCTGGTTGCTCACGCGGTTGCCGTACGGCCTCGGCCTCCTGCG
CGGCGACACGCTCCGCCACCCGCTGCTGCTCGTGTTCGGCAATCCGCACC
ATGGCGACGGCTCCGAGAGCGAGAGGACGCGAAGCAACCCCCGGAGCTAG
GGAAAACGTGGGGCTTCGACTCGTCTCGACACGACCCAGCGACGAGGTCA
ACAGCCAATGAAAGGCGCCGACACAGCAGTTGGGTCTCCCGCGAGAACCT
CCCTTCTGGTTGCTCACGCGGTTGCCGTACGGCCTCGGCCTCCTGCGCGG
CGACACGCTCCGCCACCCGCTGCTGCTCGTGTTCGGCAATCCGCACCATG
GCGACGGCTCCGAGAGCGAGAGGACGCGAAGCAACCCCCGGAGCTAGGGA
AAACGTGGGGCTTCGACTCGTCTCGACACGACCCAGCGACGAGGCCCACG
AAGGGACCGGCACCCAACGAGCGCAAGGAGAAGCCCCGCCGGTCGTGGGG
GAGGAGTGGTGACCCACGAAGGGACCGGCACCCAACGAGCGCAAGGAGAA
GCCCCGCCGGTCGTGGGGGAGGAGTGGTGA back to top
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