Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 729 |
| Cds size | 408 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815524.6631985-UTR-S-firma_F_contig10008:2706..2713 | 1622815524.6631985-UTR-S-firma_F_contig10008:2706..2713 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig10008 2707..2713 + |
| 1696949387.244084-UTR-S-firma_F_contig10008:2706..2713 | 1696949387.244084-UTR-S-firma_F_contig10008:2706..2713 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig10008 2707..2713 + |
| 1622815524.6891332-UTR-S-firma_F_contig10008:3121..3435 | 1622815524.6891332-UTR-S-firma_F_contig10008:3121..3435 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig10008 3122..3435 + |
| 1696949387.2711532-UTR-S-firma_F_contig10008:3121..3435 | 1696949387.2711532-UTR-S-firma_F_contig10008:3121..3435 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig10008 3122..3435 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815524.6767478-CDS-S-firma_F_contig10008:2713..3121 | 1622815524.6767478-CDS-S-firma_F_contig10008:2713..3121 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10008 2714..3121 + |
| 1696949387.2620614-CDS-S-firma_F_contig10008:2713..3121 | 1696949387.2620614-CDS-S-firma_F_contig10008:2713..3121 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10008 2714..3121 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10008.70.1 >prot_S-firma_F_contig10008.70.1 ID=prot_S-firma_F_contig10008.70.1|Name=mRNA_S-firma_F_contig10008.70.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=136bp
MGDGNGAGGAGATSAAMGETDMLMFMPMPRSAPSDGDVATAGDVGDVGDA
ALGAAGAGVETPLSALPLRSPSPAGEVPSLASSPMPSLSMRSMRCCRRGR
SSPDRRQEETREAVGGEKRPRTNTGKQATHQQQQS* back to topmRNA from alignment at S-firma_F_contig10008:2707..3435+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-firma_F_contig10008.70.1 ID=mRNA_S-firma_F_contig10008.70.1|Name=mRNA_S-firma_F_contig10008.70.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=729bp|location=Sequence derived from alignment at S-firma_F_contig10008:2707..3435+ (Sphaerotrichia firma ET2_F female)
CGCGGGCATGGGTGATGGCAACGGTGCTGGTGGTGCCGGTGCTACCTCCG
CGGCCATGGGAGAGACGGACATGCTCATGTTCATGCCCATGCCCCGCTCT
GCCCCCTCAGACGGAGATGTCGCCACCGCCGGAGACGTCGGAGATGTCGG
AGATGCTGCGCTTGGCGCGGCCGGTGCCGGGGTGGAAACGCCGCTGTCGG
CGTTGCCGTTGCGGTCGCCGTCGCCGGCGGGAGAGGTTCCCTCGCTCGCT
TCTTCTCCAATGCCGAGCCTTTCCATGCGCTCGATGAGGTGCTGCAGGCG
AGGCCGGTCGTCGCCTGACCGAAGACAAGAGGAGACAAGAGAAGCCGTGG
GGGGTGAGAAAAGGCCGCGAACGAACACCGGCAAACAGGCGACACACCAA
CAACAGCAGTCGTAAGGCCGAAGGCGACAGGATGCCACTGATGCGGATGG
TGTGTCGCGAACATCGAAACGTAGGCTGCAGCAAACCACAACCTGGCAGA
GGCTGTCTCGTAGCAAGGTTGTTCAAGACTGAAGGTTACGCTCAACATGT
TGCCATGTCGCTGTTGACGCCAAGAGAGTGCCGGTAGAAAGCATGCACCG
TCGGCTCAATCCCGACAGAGGCAAACAGGAACCAAATCGATTGAAGTGGC
ATACCGTGGAAGGTGGGGCATTAAAGAACAAAAAAGAGGGGAAAAGCCCC
AGTGTTCGCCCCCTCCTGTGTGACCCCGG back to topCoding sequence (CDS) from alignment at S-firma_F_contig10008:2707..3435+ >mRNA_S-firma_F_contig10008.70.1 ID=mRNA_S-firma_F_contig10008.70.1|Name=mRNA_S-firma_F_contig10008.70.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=816bp|location=Sequence derived from alignment at S-firma_F_contig10008:2707..3435+ (Sphaerotrichia firma ET2_F female)
ATGGGTGATGGCAACGGTGCTGGTGGTGCCGGTGCTACCTCCGCGGCCAT
GGGAGAGACGGACATGCTCATGTTCATGCCCATGCCCCGCTCTGCCCCCT
CAGACGGAGATGTCGCCACCGCCGGAGACGTCGGAGATGTCGGAGATGCT
GCGCTTGGCGCGGCCGGTGCCGGGGTGGAAACGCCGCTGTCGGCGTTGCC
GTTGCGGTCGCCGTCGCCGGCGGGAGAGGTTCCCTCGCTCGCTTCTTCTC
CAATGCCGAGCCTTTCCATGCGCTCGATGAGGTGCTGCAGGCGAGGCCGG
TCGTCGCCTGACCGAAGACAAGAGGAGACAAGAGAAGCCGTGGGGGGTGA
GAAAAGGCCGCGAACGAACACCGGCAAACAGGCGACACACCAACAACAGC
AGTCGTAAATGGGTGATGGCAACGGTGCTGGTGGTGCCGGTGCTACCTCC
GCGGCCATGGGAGAGACGGACATGCTCATGTTCATGCCCATGCCCCGCTC
TGCCCCCTCAGACGGAGATGTCGCCACCGCCGGAGACGTCGGAGATGTCG
GAGATGCTGCGCTTGGCGCGGCCGGTGCCGGGGTGGAAACGCCGCTGTCG
GCGTTGCCGTTGCGGTCGCCGTCGCCGGCGGGAGAGGTTCCCTCGCTCGC
TTCTTCTCCAATGCCGAGCCTTTCCATGCGCTCGATGAGGTGCTGCAGGC
GAGGCCGGTCGTCGCCTGACCGAAGACAAGAGGAGACAAGAGAAGCCGTG
GGGGGTGAGAAAAGGCCGCGAACGAACACCGGCAAACAGGCGACACACCA
ACAACAGCAGTCGTAA back to top
|