mRNA_S-firma_F_contig10001.64.1 (mRNA) Sphaerotrichia firma ET2_F female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_S-firma_F_contig10001.64.1 vs. uniprot
Match: A0A5A8CS72_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CS72_CAFRO) HSP 1 Score: 207 bits (528), Expect = 1.030e-62 Identity = 134/279 (48.03%), Postives = 167/279 (59.86%), Query Frame = 1 Query: 4 MSQLAVVTGASSGIGAALTKHFAHRGITVVACARR-LALLEAVRDACPPGSVVVCEADVRTPDGRAAIAGAAEGAPGALRYLVHNAGILGPTAPAEAIAPEDWGVVVSTNVDAPLFLTQALLPQLRKSGPGARILHIGSGAAKSPVVGWTAYCVTKAAFAMLHSCMQEELKAGPVPVLVGSVRPGIIDTPMQEEVRGSSPTAFPALDTFVGFKTLADERAAAAAAPTAPGPHTPPTDALDTPENVAYFLHWLLTVASDEFFVKEEHDIRDDSHHGEWLV 837 +S++A++TGA +GIG AL A G+ ++A RR L E RDA V ADV + DGRAAI AA+G G + +LV NAG + P A I P +W + NV PLFL QAL +LR+ PGAR+LHIGSGAA V GWTAYC TKAAF ++ M EL+ P VLVGSVRPGI++TPMQ +R + A P + F G + AAA PG PP+ +LDTPENVA FL +LLT + D+ F EE DIRD SHH W Sbjct: 6 VSRVAIITGAGTGIGRALALRLAADGVHILAVGRRETPLTELQRDAGGAEHVTPVVADVASADGRAAIVSAAKGH-GPIDFLVQNAGTIAPIAALADIKPSEWEQAFAVNVHGPLFLLQALNERLRR--PGARVLHIGSGAASKAVGGWTAYCATKAAFLSVYRSMAAELR--PEGVLVGSVRPGIVNTPMQVAIRDADEAAMPDVSFFKGLHAAMEPGAAA------PG-SAPPSGSLDTPENVAAFLSFLLTRSGDDEFGAEEWDIRDASHHHRWTT 272
BLAST of mRNA_S-firma_F_contig10001.64.1 vs. uniprot
Match: A0A7S2N1Q3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N1Q3_9STRA) HSP 1 Score: 194 bits (492), Expect = 2.060e-57 Identity = 124/281 (44.13%), Postives = 158/281 (56.23%), Query Frame = 1 Query: 1 HMSQLAVVTGASSGIGAALTKHFAHRGITVVACARRLALLEAVRDACPPGSVVVCEADVRTPDGRAAIAGAAEGAPGA-LRYLVHNAGILGPTAPAEAIAPEDWGVVVSTNVDAPLFLTQALLPQLRKS---GPGARILHIGSGAAKSPVVGWTAYCVTKAAFAMLHSCMQEELKAGPVPVLVGSVRPGIIDTPMQEEVRGSSPTAFPALDTFVGFKTLADERAAAAAAPTAPGPHTPPTDALDTPENVAYFLHWLLTVASDEFFVKEEHDIRDDSHHGEW 831 M ++V+TG +GIGAAL K A G V+ RR LE+ + A P S+ AD+ T +GR A+ A + AP L LVHNAG L P P I ++W ++ NVDAPLFLTQALLP+L+ + G GAR+LHI SGA++ P GW AYC +KAA M++ +++ELK P+ + VGSVRPG++DTPMQ+ VR S P AFP L F K T L PE VA FL WLL + E F EE DIRD H W Sbjct: 6 EMVGVSVITGGGTGIGAALAKRLASHGQRVLIVGRRSGPLESTK-ASNPESIQYVVADIATTEGRHAVVQAVDTAPYTHLSSLVHNAGTLDPVKPLSDITEKEWRDAMAINVDAPLFLTQALLPKLKANPNDGVGARVLHISSGASQKPYRGWGAYCTSKAALNMVYRVLRDELK--PLNIHVGSVRPGVVDTPMQDNVRESDPQAFPDLPRFKNLKE---------------------TGKLLLPEQVAIFLDWLLHKTTPEEFTHEEWDIRDHQHQHRW 262
BLAST of mRNA_S-firma_F_contig10001.64.1 vs. uniprot
Match: A0A2K9L6N0_9RHOO (Uncharacterized protein n=3 Tax=Rhodocyclales TaxID=206389 RepID=A0A2K9L6N0_9RHOO) HSP 1 Score: 192 bits (487), Expect = 9.730e-57 Identity = 122/276 (44.20%), Postives = 155/276 (56.16%), Query Frame = 1 Query: 4 MSQLAVVTGASSGIGAALTKHFAHRGITVVACARRLALLEAVRDACPPGSVVVCEADVRTPDGRAAIAGAAEGAPGALRYLVHNAGILGPTAPAEAIAPEDWGVVVSTNVDAPLFLTQALLPQLRKSGPGARILHIGSGAAKSPVVGWTAYCVTKAAFAMLHSCMQEELKAGPVPVLVGSVRPGIIDTPMQEEVRGSSPTAFPALDTFVGFKTLADERAAAAAAPTAPGPHTPPTDALDTPENVAYFLHWLLTVASDEFFVKEEHDIRDDSHHGEW 831 ++ +A+VTGA SGIGAALT RG+TV+A RR ALL+A+ A PG V D+ T + AA+ A P L YLVHNA +LGPT P +A + TN+ APLFLTQALLP + GARILH+ SGAA P+VGW YC+ K+A ML+ C +EEL+A +LVGS RPG++DTPMQ E+R FP +DTF K L +P+ V FL WLL A E F +E+DIRD + W Sbjct: 11 LNSIAIVTGAGSGIGAALTAQLVARGMTVLAIGRRAALLDALA-ARHPGQVEPLAVDLSTEEAPAAVRAALGDRP--LHYLVHNAAVLGPTGPLAGVARAAFRQHWETNLAAPLFLTQALLPSM---AAGARILHVSSGAAHRPLVGWGPYCIAKSALHMLYQCWREELRAR--HILVGSARPGVVDTPMQAEIRALDEATFPEVDTFRKLKDNGQ---------------------LSSPDTVGRFLTWLLLEADAEQFCAQENDIRDAALARRW 257
BLAST of mRNA_S-firma_F_contig10001.64.1 vs. uniprot
Match: A0A2E2WGM0_9DELT (Short-chain dehydrogenase n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A2E2WGM0_9DELT) HSP 1 Score: 188 bits (477), Expect = 2.440e-55 Identity = 121/276 (43.84%), Postives = 158/276 (57.25%), Query Frame = 1 Query: 4 MSQLAVVTGASSGIGAALTKHFAHRGITVVACARRLALLEAVRDACPPGSVVVCEADVRTPDGRAAIAGAAEGAPGALRYLVHNAGILGPTAPAEAIAPEDWGVVVSTNVDAPLFLTQALLPQLRKSGPGARILHIGSGAAKSPVVGWTAYCVTKAAFAMLHSCMQEELKAGPVPVLVGSVRPGIIDTPMQEEVRGSSPTAFPALDTFVGFKTLADERAAAAAAPTAPGPHTPPTDALDTPENVAYFLHWLLTVASDEFFVKEEHDIRDDSHHGEW 831 M + A++TGA +GIG AL++ G+ V+A RR LE++R A P +VV ADV T GR AIA A GA L LVHNA +L P P ++ E W + N++ PLFLTQALLP+L G+RILHI SGAA + + GW AYC++KAA M + C + EL+A VLVGSVRPG++DTPMQE +R TAFP ++ F FK + L+ PE VA FL WLL A + F +E DIRD++ W Sbjct: 1 MKKTALITGAGTGIGRALSEFLIEAGLQVIAVGRRPQPLESLR-ASHPDAVVAVSADVGTEAGRLAIAEAVSGA--VLNLLVHNAAVLEPAGPLAEMSLEAWREHQAINLEGPLFLTQALLPRLES---GSRILHISSGAAHTAIQGWAAYCMSKAALHMGYQCWRNELQAR--SVLVGSVRPGVVDTPMQEAIRDFDETAFPLVEKFRAFKADGE---------------------LEPPERVACFLGWLLLKAPEATFTAQELDIRDETLWSNW 247
BLAST of mRNA_S-firma_F_contig10001.64.1 vs. uniprot
Match: A0A2E3MJH9_9GAMM (Short-chain dehydrogenase n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E3MJH9_9GAMM) HSP 1 Score: 187 bits (476), Expect = 4.120e-55 Identity = 120/277 (43.32%), Postives = 155/277 (55.96%), Query Frame = 1 Query: 4 MSQLAVVTGASSGIGAALTKHFAHRGITVVACARRLALLEAVRDACPPGSVVVCEADVRTPDGRAAIAGAAEGAPGALRYLVHNAGILGPTAPAEAIAPEDWGVVVSTNVDAPLFLTQALLPQLRKSGPGARILHIGSGAAKSPVVGWTAYCVTKAAFAMLHSCMQEELKAGPVPVLVGSVRPGIIDTPMQEEVRGSSPTAFPALDTFVGFKTLADERAAAAAAPTAPGPHTPPTDALDTPENVAYFLHWLLTVASDEFFVKEEHDIRDDSHHGEWL 834 MS+++VVTGA SGIG AL+ A TV+A RR L+ +++ P V + ADV P+ R AIA + YLVHNAG+L P A + DW ++ NV+APLFLTQALLPQL G RILHI SGAA P+ GW AYC +KAAF ML C++EEL++ + +GSVRPG++DTP+Q+ +R FPAL F K + L P A FL+W+LT+ E F +EE DI D SHH WL Sbjct: 1 MSKVSVVTGAGSGIGRALSVLMAENDHTVIAIGRREQPLQQLKNHYPK-RVQIIPADVSKPENRDAIASVISKYSN-IDYLVHNAGVLEPVAELRDVDLHDWRAHMAINVEAPLFLTQALLPQLA----GGRILHISSGAAHRPIHGWGAYCTSKAAFYMLFQCLREELQS--FNIGIGSVRPGVVDTPIQDRIRQLDEAVFPALKDFQDLKEY---------------------NKLIPPATCALFLYWILTMTDAENFTREEWDIYDTSHHHHWL 248
BLAST of mRNA_S-firma_F_contig10001.64.1 vs. uniprot
Match: UPI0016582CCD (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Thauera sp. CAU 1555 TaxID=2767595 RepID=UPI0016582CCD) HSP 1 Score: 179 bits (453), Expect = 9.250e-52 Identity = 120/276 (43.48%), Postives = 147/276 (53.26%), Query Frame = 1 Query: 4 MSQLAVVTGASSGIGAALTKHFAHRGITVVACARRLALLEAVRDACPPGSVVVCEADVRTPDGRAAIAGAAEGAPGALRYLVHNAGILGPTAPAEAIAPEDWGVVVSTNVDAPLFLTQALLPQLRKSGPGARILHIGSGAAKSPVVGWTAYCVTKAAFAMLHSCMQEELKAGPVPVLVGSVRPGIIDTPMQEEVRGSSPTAFPALDTFVGFKTLADERAAAAAAPTAPGPHTPPTDALDTPENVAYFLHWLLTVASDEFFVKEEHDIRDDSHHGEW 831 MS +A+VTGA SGIGAALT RG TV+A RR ALL+A+ A G V DV D AA+ A G A YLVHNA +LGP P + + TN+ APLFLTQALLP L GARILH+ SGAA P+ GW YC++K+A ML+ C +EEL+ +LVGS RPG++DTPMQ E+R AFP +D F K L +P+ V FL WLL A F + E+DIRD W Sbjct: 1 MSSIAIVTGAGSGIGAALTAQLVARGCTVLAIGRRAALLDALA-ARHAGKVETLALDVSAEDAPAAVLAALNGR--APHYLVHNAAVLGPAGPLAEVQRAAFRQHWETNLAAPLFLTQALLPVL---AAGARILHVSSGAAHHPLAGWGPYCISKSALHMLYQCWREELRER--NILVGSARPGVVDTPMQAEIRALDEAAFPDVDAFRKLKENGQ---------------------LTSPDTVGRFLAWLLLDADAAQFREHENDIRDAELARRW 247
BLAST of mRNA_S-firma_F_contig10001.64.1 vs. uniprot
Match: A0A7R9WVQ2_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WVQ2_9STRA) HSP 1 Score: 178 bits (452), Expect = 1.230e-51 Identity = 111/271 (40.96%), Postives = 148/271 (54.61%), Query Frame = 1 Query: 19 VVTGASSGIGAALTKHFAHRGITVVACARRLALLEAVRDACPPGSVVVCEADVRTPDGRAAIAGAAEGAPGALRYLVHNAGILGPTAPAEAIAPEDWGVVVSTNVDAPLFLTQALLPQLRKSGPGARILHIGSGAAKSPVVGWTAYCVTKAAFAMLHSCMQEELKAGPVPVLVGSVRPGIIDTPMQEEVRGSSPTAFPALDTFVGFKTLADERAAAAAAPTAPGPHTPPTDALDTPENVAYFLHWLLTVASDEFFVKEEHDIRDDSHHGEW 831 VVTGA SG+G A+ HF+ G V+ RRLA L+ + GS+ + ADV +GR AI A ++YL+HNAG+L P P + P D+ +S N++APLF TQ L P+ + + R+LH+ SGAA SP GW YC +KAA M++ + ELKA + VGSVRPG++DTPMQ VR + FP L FV K ++ L PE VA F+ WLLT + + F EE DIRDD H G+W Sbjct: 7 VVTGAGSGLGRAMAVHFSQNGFPVLGIGRRLAPLQEIES----GSISILSADVSEQEGRQAIYDAIPTGDH-IKYLIHNAGVLEPIQPLMDVKPADFRKHMSINLEAPLFCTQMLAPKFQANS--TRVLHVSSGAAVSPYEGWGTYCTSKAALNMVYRVLDLELKAK--GIRVGSVRPGVVDTPMQSVVRSADEAVFPNLQRFVDLKE---------------------SNQLLPPEKVARFMFWLLTETTPDEFAAEEWDIRDDRHQGKW 247
BLAST of mRNA_S-firma_F_contig10001.64.1 vs. uniprot
Match: F0YRH3_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YRH3_AURAN) HSP 1 Score: 178 bits (452), Expect = 1.560e-51 Identity = 118/271 (43.54%), Postives = 143/271 (52.77%), Query Frame = 1 Query: 19 VVTGASSGIGAALTKHFAHRGITVVACARRLALLEAVRDACPPGSVVVCEADVRTPDGRAAIAGAAEGAPGALRYLVHNAGILGPTAPAEAIAPEDWGVVVSTNVDAPLFLTQALLPQLRKSGPGARILHIGSGAAKSPVVGWTAYCVTKAAFAMLHSCMQEELKAGPVPVLVGSVRPGIIDTPMQEEVRGSSPTAFPALDTFVGFKTLADERAAAAAAPTAPGPHTPPTDALDTPENVAYFLHWLLTVASDEFFVKEEHDIRDDSHHGEW 831 VVTGA SGIG A RG+ VV RR A L R C G V ADV T DGRAA+A AA + +VHNA +G TAP A+ W ++TNV+ PLFLTQALLP L G G+R+LH+ SGAA G AYC +KAA ++ ++ EL GP VLVGS PG+ DTPMQ + P A F G + A AP PP LD PENVA F WLL + FV ++ DI+D +HH W Sbjct: 1 VVTGAGSGIGRATAVEICRRGVRVVGVGRRAAALAETRTVCGDGFTAVA-ADVGTEDGRAAVAAAARASTPRKTVVVHNAAAVGETAPLGALTLGGWRAAMATNVEGPLFLTQALLPGL---GAGSRVLHVSSGAAHGGAEGLAAYCASKAALKSVYESLRGEL--GPA-VLVGSAMPGVADTPMQRALVAELPAAHAMRPYFEGLR--------AEKAPAGGAGRPPPAAGLDAPENVAAFFAWLLFDCPADEFVSKDWDIQDAAHHARW 256
BLAST of mRNA_S-firma_F_contig10001.64.1 vs. uniprot
Match: A0A7S4JEB1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JEB1_9STRA) HSP 1 Score: 174 bits (440), Expect = 8.740e-50 Identity = 111/266 (41.73%), Postives = 152/266 (57.14%), Query Frame = 1 Query: 13 LAVVTGASSGIGAALTKHFAHRGITVVACARRLALLEAVRDACPPGSVVVCEADVRTPDGRAAIAGAAEGAPGALRYLVHNAGILGPTAPAEAIAPEDWGVVVSTNVDAPLFLTQALLPQLRKSGPGARILHIGSGAAKSPVVGWTAYCVTKAAFAMLHSCMQEELKAGPVPVLVGSVRPGIIDTPMQEEVRGSSPTAFPALDTFVGFKTLADERAAAAAAPTAPGPHTPPTDALDTPENVAYFLHWLLTVASDEFFVKEEHDIRD 810 L++VTG +GIGAAL++ A RG V+ RRL LE R + P G++ + ADV T +GR A+ A G + LVHNAG+L P P + ++W +STN+DAPLFLTQA+LP++ + G RILHI SGAAKS GW AYCV+KA M++ + +EL+ P + VGSVRPG++DTPMQ+ VR + FP L F+ K + +L P + A F+ WLL E F +E DIR+ Sbjct: 5 LSIVTGGGTGIGAALSRRLAARG-PVLIVGRRLGPLEETRKSDPHGNIRIVAADVSTAEGRDAVLDAVAGKE-LVSALVHNAGMLEPVMPLAEVGAKEWRNAISTNLDAPLFLTQAVLPRMSRGG---RILHISSGAAKSAYEGWGAYCVSKAGLNMMYRVLAKELE--PRGIYVGSVRPGVVDTPMQDHVREADERVFPMLAKFLTLKE---------------------SGSLMKPADTARFVDWLLNGVDGEEFSAQEWDIRE 242
BLAST of mRNA_S-firma_F_contig10001.64.1 vs. uniprot
Match: UPI001EE871D4 (SDR family NAD(P)-dependent oxidoreductase n=3 Tax=Ectothiorhodospiraceae TaxID=72276 RepID=UPI001EE871D4) HSP 1 Score: 172 bits (437), Expect = 2.840e-49 Identity = 106/276 (38.41%), Postives = 150/276 (54.35%), Query Frame = 1 Query: 7 SQLAVVTGASSGIGAALTKHFAHRGITVVACARRLALLEAVRDACPPGSVVVCEADVRTPDGRAAIAGAAEGAPGALRYLVHNAGILGPTAPAEAIAPEDWGVVVSTNVDAPLFLTQALLPQLRKSGPGARILHIGSGAAKSPVVGWTAYCVTKAAFAMLHSCMQEEL-KAGPVPVLVGSVRPGIIDTPMQEEVRGSSPTAFPALDTFVGFKTLADERAAAAAAPTAPGPHTPPTDALDTPENVAYFLHWLLTVASDEFFVKEEHDIRDDSHHGEW 831 + L +VTG SG+G AL + A G V+ RR L P + AD+ P+ RA I AA+G +R +VHNAG+L P P + E W ++ NV+AP+FLTQ LLP++ + G+RILHI SGAA P +GW AYC +KAA M++ ++EL + G +LVGSVRPG++DTPMQ+ +R +P FPA+D F+ K L TPE+ A F+ W L D+ F+++E +I D+ H W Sbjct: 6 NDLVLVTGGGSGLGRALVRGLARDGAQVLTVGRRAEPLGETASVAPE-RIRTLSADIANPEDRARIVDAAQG--WRVRAVVHNAGLLDPVGPLREVDLEAWRQAMAVNVEAPVFLTQGLLPRMER---GSRILHISSGAAHKPSMGWGAYCTSKAALFMIYQVYRDELWRDG---ILVGSVRPGVVDTPMQDHIRTQTPERFPAVDRFIKLKQNGQ---------------------LHTPEDAADFVQWTLLETGDKQFIEQEWNISDEDHAQRW 251 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10001.64.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10001.64.1 >prot_S-firma_F_contig10001.64.1 ID=prot_S-firma_F_contig10001.64.1|Name=mRNA_S-firma_F_contig10001.64.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=280bp MSQLAVVTGASSGIGAALTKHFAHRGITVVACARRLALLEAVRDACPPGSback to top mRNA from alignment at S-firma_F_contig10001:2359..3201- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10001.64.1 ID=mRNA_S-firma_F_contig10001.64.1|Name=mRNA_S-firma_F_contig10001.64.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=843bp|location=Sequence derived from alignment at S-firma_F_contig10001:2359..3201- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10001:2359..3201- >mRNA_S-firma_F_contig10001.64.1 ID=mRNA_S-firma_F_contig10001.64.1|Name=mRNA_S-firma_F_contig10001.64.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1680bp|location=Sequence derived from alignment at S-firma_F_contig10001:2359..3201- (Sphaerotrichia firma ET2_F female)back to top |