mRNA_S-firma_F_contig1000.59.1 (mRNA) Sphaerotrichia firma ET2_F female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1000.59.1 vs. uniprot
Match: D7G2T2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T2_ECTSI) HSP 1 Score: 251 bits (642), Expect = 7.840e-70 Identity = 242/570 (42.46%), Postives = 292/570 (51.23%), Query Frame = 1 Query: 13 GGDNTAAAKAAAATAMTGRLERVLGRIMRRIEGARQLRVWVEREVERARGAAAEGLDDLRGRWDAQLTRLQGAERKLLRLQEQAKYGGRRAALDAREECYAKIEQVEKEKWGLRDCLVAEKRQSELLEAKASRLQEQ-----LAALSDQVERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRE---EREKERALRQQEEGRVSREQEAAVLRVSELLEDERVARDEETSRLTXXXXXXXXXXXXXXXXXXXXXXXXRETQGLLGEMSPG-SDRAARGPKGSGSRTFRGAVRERLPPATGG--ASALELQASRLERLVADTAALVKHTGRFYDRYSETHKAANS--SGEAGNPRTVPGNTPGRKGSGGD-GFVPNCGAPAGSCCKPTPSSSSKAAFFSHGVVRQSLGAGGAGSPSYRGSGSFAPTATATTSPGSQPWGGGGDEERSGNFLGRAL--RRGVAGAAAAGEGGCCAALRELDRRCYSLLESNAQLCLKLQGLGLEYAGLTRVLLAAGG 1674
GG A A A AM RLERVL RIMRR++GAR LR WV +VE A G A EGL ++RGRW+A+L RLQ AERKL+RLQEQAKYGGRRAALDAREECYAKIE+VE+EKW LRD LV+E+R+ E+L A RL++ ++A SD XXXXXXXXX +E R+KER L +Q + A R++ LLE+ER AR EE + RETQGLLGEMSP D A GP FRG+V ER + G +SAL LQAS+LER+VA+ + L++ TG FYDRYSETHK A +G+ +PG+ G G+ G N GA G+ +AA + + +S GA G SP G F+P G QPW G E S NFL R L R V E G ALRELDR CYSLLESNAQLCL++QGLGLEYAGLTR L+A+GG
Sbjct: 161 GGGAVPAGSAVDAAAMVARLERVLSRIMRRVDGARGLRAWVTGKVENAGGDAMEGLREIRGRWEAELGRLQAAERKLVRLQEQAKYGGRRAALDAREECYAKIERVEQEKWALRDSLVSEEREVEVLRAHLKRLKDATDKAAVSAESDYRAACHELEAERGHRQRLQDKTELLEGKASXXXXXXXXXSEQIDRYKTEALQQQQDKDRLLRSQETLQSQLKEEVQSVEKARREFLSNSQEISRGRDKERELEEQRDSAA-----AEAARLTCLLEEERRARREENAM------------------GEAVLREVRETQGLLGEMSPHRGDPAGTGP-------FRGSVLERGSSSDGDDPSSALGLQASKLERIVAEASDLIRRTGHFYDRYSETHKNAGGEKNGDDEASEKLPGSNSGLPGNDATAGRYQNRGAATGAGQSDRYEGRHRAAS-AEAAIERSFGANGR-SPGDPPPGVFSPQQPPAGG-GHQPWRG---REDSWNFLDRTLEHRHWV-------ETG--PALRELDRACYSLLESNAQLCLRIQGLGLEYAGLTRELMASGG 685
BLAST of mRNA_S-firma_F_contig1000.59.1 vs. uniprot
Match: A0A6H5K601_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K601_9PHAE) HSP 1 Score: 108 bits (270), Expect = 2.730e-22 Identity = 93/207 (44.93%), Postives = 114/207 (55.07%), Query Frame = 1 Query: 1072 QASRLERLVADTAALVKHTGRFYDRYSETHKAA--NSSGEAGNPRTVPGNTPGRKGSGGD-GFVPNCGAPAGSCCKPTPSSSSKAAFFSHGVVRQSLGAGGAGSPSYRGSGSFAPTATATTSPGSQPWGGGGDEERSGNFLGRAL--RRGVAGAAAAGEGGCCAALRELDRRCYSLLESNAQLCLKLQGLGLEYAGLTRVLLAAGGE 1677
QAS+LER+VA+ + L++ TG FYDRYSETHK A + +G+ +PG G+ G N G + +AA + R S GA G+ SP G F+P + G QPW G E SGN L R L R GV G ALRELDR CYSLLESNAQLCL+LQGLGLEYAGL+R LLA+G +
Sbjct: 7 QASKLERIVAEASDLIRQTGHFYDRYSETHKNAGGDKNGDDKASEKIPGGNSSLLGNDATAGRHQNRGVATAAGQSDRCEGRHRAASAGAAMER-SFGANGS-SPGNPPPGVFSPQQLSAG--GHQPWRG---REDSGNCLDRTLEHRHGV---------GAGPALRELDRACYSLLESNAQLCLRLQGLGLEYAGLSRQLLASGAK 197 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1000.59.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1000.59.1 >prot_S-firma_F_contig1000.59.1 ID=prot_S-firma_F_contig1000.59.1|Name=mRNA_S-firma_F_contig1000.59.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=684bp GGADGGDNTAAAKAAAATAMTGRLERVLGRIMRRIEGARQLRVWVEREVEback to top mRNA from alignment at S-firma_F_contig1000:12917..23531- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1000.59.1 ID=mRNA_S-firma_F_contig1000.59.1|Name=mRNA_S-firma_F_contig1000.59.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=10615bp|location=Sequence derived from alignment at S-firma_F_contig1000:12917..23531- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1000:12917..23531- >mRNA_S-firma_F_contig1000.59.1 ID=mRNA_S-firma_F_contig1000.59.1|Name=mRNA_S-firma_F_contig1000.59.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=4104bp|location=Sequence derived from alignment at S-firma_F_contig1000:12917..23531- (Sphaerotrichia firma ET2_F female)back to top |