mRNA_S-ischiensis_contig1.1106.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1106.1
Unique NamemRNA_S-ischiensis_contig1.1106.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7533242..7533634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size393
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1106.1prot_S-ischiensis_contig1.1106.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7533271..7533609 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815376.594336-UTR-S-ischiensis_contig1:7533241..75332701622815376.594336-UTR-S-ischiensis_contig1:7533241..7533270Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7533242..7533270 +
1695739665.7190523-UTR-S-ischiensis_contig1:7533241..75332701695739665.7190523-UTR-S-ischiensis_contig1:7533241..7533270Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7533242..7533270 +
1622815376.6213152-UTR-S-ischiensis_contig1:7533609..75336341622815376.6213152-UTR-S-ischiensis_contig1:7533609..7533634Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7533610..7533634 +
1695739665.7386081-UTR-S-ischiensis_contig1:7533609..75336341695739665.7386081-UTR-S-ischiensis_contig1:7533609..7533634Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7533610..7533634 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815376.6078522-CDS-S-ischiensis_contig1:7533270..75336091622815376.6078522-CDS-S-ischiensis_contig1:7533270..7533609Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7533271..7533609 +
1695739665.7303278-CDS-S-ischiensis_contig1:7533270..75336091695739665.7303278-CDS-S-ischiensis_contig1:7533270..7533609Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7533271..7533609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1106.1

>prot_S-ischiensis_contig1.1106.1 ID=prot_S-ischiensis_contig1.1106.1|Name=mRNA_S-ischiensis_contig1.1106.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=113bp
MQQLSCMCRALLCGNIGVFVGASADRAQSSLFLRWDLIFRQRSEADAAHV
FSPQGPATPLLTRLCTCLPESLPLPVCLPAFLPRWGSPLLVLDTPHAGHL
ACAPGSANRGFP*
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mRNA from alignment at S-ischiensis_contig1:7533242..7533634+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1106.1 ID=mRNA_S-ischiensis_contig1.1106.1|Name=mRNA_S-ischiensis_contig1.1106.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=393bp|location=Sequence derived from alignment at S-ischiensis_contig1:7533242..7533634+ (Schizocladia ischiensis KU_0333)
CGGGGGAGTGCTCTTTGGGGGGGGTGAGTATGCAACAGCTCTCATGCATG
TGCAGGGCACTTTTGTGTGGGAACATTGGAGTGTTTGTGGGAGCCTCTGC
GGACAGAGCCCAGTCTAGTCTTTTCCTGCGGTGGGACCTGATATTTCGCC
AAAGAAGCGAGGCAGATGCCGCGCATGTCTTCTCTCCCCAAGGCCCCGCC
ACCCCCCTGCTTACGCGCCTGTGTACCTGCCTGCCTGAGAGTTTGCCCCT
GCCCGTCTGCCTGCCCGCATTTTTGCCGCGCTGGGGCAGTCCCCTCCTCG
TTTTGGACACTCCACACGCTGGCCACCTCGCCTGTGCCCCTGGCTCAGCA
AACAGAGGCTTCCCCTGATTGGCCATCGGCCGCGGAAATTCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7533242..7533634+

>mRNA_S-ischiensis_contig1.1106.1 ID=mRNA_S-ischiensis_contig1.1106.1|Name=mRNA_S-ischiensis_contig1.1106.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=678bp|location=Sequence derived from alignment at S-ischiensis_contig1:7533242..7533634+ (Schizocladia ischiensis KU_0333)
ATGCAACAGCTCTCATGCATGTGCAGGGCACTTTTGTGTGGGAACATTGG
AGTGTTTGTGGGAGCCTCTGCGGACAGAGCCCAGTCTAGTCTTTTCCTGC
GGTGGGACCTGATATTTCGCCAAAGAAGCGAGGCAGATGCCGCGCATGTC
TTCTCTCCCCAAGGCCCCGCCACCCCCCTGCTTACGCGCCTGTGTACCTG
CCTGCCTGAGAGTTTGCCCCTGCCCGTCTGCCTGCCCGCATTTTTGCCGC
GCTGGGGCAGTCCCCTCCTCGTTTTGGACACTCCACACGCTGGCCACCTC
GCCTGTGCCCCTGGCTCAGCAAACAGAGGCTTCCCCTGAATGCAACAGCT
CTCATGCATGTGCAGGGCACTTTTGTGTGGGAACATTGGAGTGTTTGTGG
GAGCCTCTGCGGACAGAGCCCAGTCTAGTCTTTTCCTGCGGTGGGACCTG
ATATTTCGCCAAAGAAGCGAGGCAGATGCCGCGCATGTCTTCTCTCCCCA
AGGCCCCGCCACCCCCCTGCTTACGCGCCTGTGTACCTGCCTGCCTGAGA
GTTTGCCCCTGCCCGTCTGCCTGCCCGCATTTTTGCCGCGCTGGGGCAGT
CCCCTCCTCGTTTTGGACACTCCACACGCTGGCCACCTCGCCTGTGCCCC
TGGCTCAGCAAACAGAGGCTTCCCCTGA
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