mRNA_S-ischiensis_contig1.1012.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1012.1
Unique NamemRNA_S-ischiensis_contig1.1012.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:6993488..6993943 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size456
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1012.1prot_S-ischiensis_contig1.1012.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 6993513..6993893 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815373.9674687-UTR-S-ischiensis_contig1:6993487..69935121622815373.9674687-UTR-S-ischiensis_contig1:6993487..6993512Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 6993488..6993512 +
1695739665.2516892-UTR-S-ischiensis_contig1:6993487..69935121695739665.2516892-UTR-S-ischiensis_contig1:6993487..6993512Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 6993488..6993512 +
1622815373.995423-UTR-S-ischiensis_contig1:6993893..69939431622815373.995423-UTR-S-ischiensis_contig1:6993893..6993943Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 6993894..6993943 +
1695739665.2708914-UTR-S-ischiensis_contig1:6993893..69939431695739665.2708914-UTR-S-ischiensis_contig1:6993893..6993943Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 6993894..6993943 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815373.9814363-CDS-S-ischiensis_contig1:6993512..69938931622815373.9814363-CDS-S-ischiensis_contig1:6993512..6993893Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6993513..6993893 +
1695739665.2628117-CDS-S-ischiensis_contig1:6993512..69938931695739665.2628117-CDS-S-ischiensis_contig1:6993512..6993893Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6993513..6993893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1012.1

>prot_S-ischiensis_contig1.1012.1 ID=prot_S-ischiensis_contig1.1012.1|Name=mRNA_S-ischiensis_contig1.1012.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=127bp
MGILDLPRAVPRHGEGPLTPAGPRPSRGAAPPARTLRSRGWGGYGLGHPS
ASAGAVATPSHPALPQEGGGLLHIDRGAWSMVSGLRQARLERIRLRQSIY
EQFYTWKYTSWKYTSKYTCAHVALAV*
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mRNA from alignment at S-ischiensis_contig1:6993488..6993943+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1012.1 ID=mRNA_S-ischiensis_contig1.1012.1|Name=mRNA_S-ischiensis_contig1.1012.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=456bp|location=Sequence derived from alignment at S-ischiensis_contig1:6993488..6993943+ (Schizocladia ischiensis KU_0333)
GGAGAGAGTTAAGTAGGTAGCATAGATGGGTATCTTGGATCTCCCCCGCG
CCGTGCCCCGGCACGGTGAGGGACCCCTCACCCCGGCCGGGCCCCGGCCT
AGCAGGGGAGCCGCCCCCCCCGCCCGGACTCTCAGGAGTCGGGGATGGGG
GGGATATGGACTTGGCCACCCCTCCGCCTCTGCCGGTGCAGTGGCCACTC
CCTCCCACCCTGCTCTGCCACAGGAGGGAGGGGGCCTGCTTCATATCGAT
CGAGGCGCCTGGTCAATGGTCTCGGGGCTGCGGCAAGCACGACTTGAGCG
CATACGTCTACGTCAAAGTATATACGAGCAATTCTATACTTGGAAGTATA
CTTCTTGGAAGTATACTTCGAAGTATACTTGTGCACATGTCGCGCTTGCC
GTATAGAGTGGTCCAGAAGACTGTTGGCCATGCCTCGACCGAGACGGAGG
AGCCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:6993488..6993943+

>mRNA_S-ischiensis_contig1.1012.1 ID=mRNA_S-ischiensis_contig1.1012.1|Name=mRNA_S-ischiensis_contig1.1012.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=762bp|location=Sequence derived from alignment at S-ischiensis_contig1:6993488..6993943+ (Schizocladia ischiensis KU_0333)
ATGGGTATCTTGGATCTCCCCCGCGCCGTGCCCCGGCACGGTGAGGGACC
CCTCACCCCGGCCGGGCCCCGGCCTAGCAGGGGAGCCGCCCCCCCCGCCC
GGACTCTCAGGAGTCGGGGATGGGGGGGATATGGACTTGGCCACCCCTCC
GCCTCTGCCGGTGCAGTGGCCACTCCCTCCCACCCTGCTCTGCCACAGGA
GGGAGGGGGCCTGCTTCATATCGATCGAGGCGCCTGGTCAATGGTCTCGG
GGCTGCGGCAAGCACGACTTGAGCGCATACGTCTACGTCAAAGTATATAC
GAGCAATTCTATACTTGGAAGTATACTTCTTGGAAGTATACTTCGAAGTA
TACTTGTGCACATGTCGCGCTTGCCGTATAGATGGGTATCTTGGATCTCC
CCCGCGCCGTGCCCCGGCACGGTGAGGGACCCCTCACCCCGGCCGGGCCC
CGGCCTAGCAGGGGAGCCGCCCCCCCCGCCCGGACTCTCAGGAGTCGGGG
ATGGGGGGGATATGGACTTGGCCACCCCTCCGCCTCTGCCGGTGCAGTGG
CCACTCCCTCCCACCCTGCTCTGCCACAGGAGGGAGGGGGCCTGCTTCAT
ATCGATCGAGGCGCCTGGTCAATGGTCTCGGGGCTGCGGCAAGCACGACT
TGAGCGCATACGTCTACGTCAAAGTATATACGAGCAATTCTATACTTGGA
AGTATACTTCTTGGAAGTATACTTCGAAGTATACTTGTGCACATGTCGCG
CTTGCCGTATAG
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