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Homology
BLAST of mRNA_S-ischiensis_contig15.3839.1 vs. uniprot
Match: A0A6H5KZ97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ97_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 4.250e-19 Identity = 56/122 (45.90%), Postives = 77/122 (63.11%), Query Frame = 2
Query: 1022 EQARANLLARLSDGKGVKVLKHSRNGKSVVRVIKSTDG-LQTITWGSEKYEMAALIEVRHGADSDPTAPGARGTSLLRRSKSARVAMGRSFSLIFPKRSLDFTTDTEEE--AEQLVAGFRAC 1378
E AR L ARL +GV++LKH RNGKS+ R ++ D T+TWG +++ + EVR G + DP+ P GTS LRRSK+ R A+ RSFSL+FP RSLDFT ++ + A + + R C
Sbjct: 233 ETARKYLTARLLSDEGVRLLKHGRNGKSMHRTLRCPDQECGTLTWGKTLHDLRLMQEVRRGTEVDPSEPNYTGTSELRRSKAGRAALDRSFSLLFPSRSLDFTVASKGKTNANKWCSASRPC 354
BLAST of mRNA_S-ischiensis_contig15.3839.1 vs. uniprot
Match: A0A7S1B9G8_9STRA (Hypothetical protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B9G8_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 6.140e-6 Identity = 44/125 (35.20%), Postives = 68/125 (54.40%), Query Frame = 2
Query: 1040 LLARLSDGKGVKVLKHSRNG--KSVVRVIKSTDGLQTITW--------GSEK---YEMAALIEVRHGADSDPTAPGARGTSLLRRSKSARVAMGRSFSLIFPKRSLDFTTDTEEEAEQLVAGFRA 1375
+ARL G + V+KH R+ KS +R++ ++I+W S+K +++ +EVRH DP PG GTS+LR +K +SFSLIFPKR++D T T ++ + L+ G A
Sbjct: 517 FVARLRSG--ITVVKHGRSRWCKSRLRILHVHIDGKSISWKPALGEPHSSKKPPRLDLSTCLEVRHAWSPDPECPGLVGTSILR-AKCELQNAHKSFSLIFPKRTVDVTAITADQCKLLMEGMSA 638
BLAST of mRNA_S-ischiensis_contig15.3839.1 vs. uniprot
Match: A0A7S2KZD6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KZD6_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 1.290e-5 Identity = 41/125 (32.80%), Postives = 65/125 (52.00%), Query Frame = 2
Query: 1040 LLARLSDGKGVKVLKHSRNG--KSVVRVIKSTDGLQTITWGSE-----------KYEMAALIEVRHGADSDPTAPGARGTSLLRRSKSARVAMGRSFSLIFPKRSLDFTTDTEEEAEQLVAGFRA 1375
+ARL G + V+KH R+ KS +R++ ++++W K +++ EVRH DP P GT++LR SK V +SFSL+FPKR++D T T ++ + L+ G A
Sbjct: 400 FVARLRSG--ITVVKHGRSRWCKSRLRILHVHPDGRSLSWKPAVGEPTSSKRPPKLDLSTCQEVRHAWSGDPLHPNYTGTTILR-SKCEPVNAHKSFSLVFPKRTVDITAITADQCKVLMEGLSA 521
BLAST of mRNA_S-ischiensis_contig15.3839.1 vs. uniprot
Match: A0A7S0CHF7_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CHF7_9STRA) HSP 1 Score: 52.8 bits (125), Expect = 4.570e-5 Identity = 25/71 (35.21%), Postives = 42/71 (59.15%), Query Frame = 2
Query: 1169 EMAALIEVRHGADSDPTAPGARGTSLLRRSKSARVAMGRSFSLIFPKRSLDFTTDTEEEAEQLVAGFRACL 1381
++ + E+R + DPT+ RGT +LR+ + RSFSLIFP R++D T +++ + L+ GF A +
Sbjct: 8 DLTSCTEIRRASSPDPTSSNMRGTPILRQKCTNTDMASRSFSLIFPDRTVDITALNDDQYKMLLDGFSALI 78
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 69.7 |
| Seed ortholog evalue | 3.6e-09 |
| Seed eggNOG ortholog | 2880.D7FVZ1 |
| EggNOG OGs | 2E84P@1,2SEN4@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-17_002480.1 |
| Exons | 4 |
| Model size | 1390 |
| Cds size | 1248 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815771.6577342-UTR-S-ischiensis_contig15:2589626..2589632 | 1622815771.6577342-UTR-S-ischiensis_contig15:2589626..2589632 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig15 2589627..2589632 - |
| 1695739906.963556-UTR-S-ischiensis_contig15:2589626..2589632 | 1695739906.963556-UTR-S-ischiensis_contig15:2589626..2589632 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig15 2589627..2589632 - |
| 1622815771.7271771-UTR-S-ischiensis_contig15:2592888..2593024 | 1622815771.7271771-UTR-S-ischiensis_contig15:2592888..2593024 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig15 2592889..2593024 - |
| 1695739907.014764-UTR-S-ischiensis_contig15:2592888..2593024 | 1695739907.014764-UTR-S-ischiensis_contig15:2592888..2593024 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig15 2592889..2593024 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815771.676261-CDS-S-ischiensis_contig15:2589632..2589827 | 1622815771.676261-CDS-S-ischiensis_contig15:2589632..2589827 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig15 2589633..2589827 - |
| 1695739906.9753408-CDS-S-ischiensis_contig15:2589632..2589827 | 1695739906.9753408-CDS-S-ischiensis_contig15:2589632..2589827 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig15 2589633..2589827 - |
| 1622815771.6899054-CDS-S-ischiensis_contig15:2591248..2591512 | 1622815771.6899054-CDS-S-ischiensis_contig15:2591248..2591512 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig15 2591249..2591512 - |
| 1695739906.9850936-CDS-S-ischiensis_contig15:2591248..2591512 | 1695739906.9850936-CDS-S-ischiensis_contig15:2591248..2591512 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig15 2591249..2591512 - |
| 1622815771.7046494-CDS-S-ischiensis_contig15:2591956..2592472 | 1622815771.7046494-CDS-S-ischiensis_contig15:2591956..2592472 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig15 2591957..2592472 - |
| 1695739906.9950564-CDS-S-ischiensis_contig15:2591956..2592472 | 1695739906.9950564-CDS-S-ischiensis_contig15:2591956..2592472 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig15 2591957..2592472 - |
| 1622815771.7170875-CDS-S-ischiensis_contig15:2592615..2592888 | 1622815771.7170875-CDS-S-ischiensis_contig15:2592615..2592888 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig15 2592616..2592888 - |
| 1695739907.004599-CDS-S-ischiensis_contig15:2592615..2592888 | 1695739907.004599-CDS-S-ischiensis_contig15:2592615..2592888 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig15 2592616..2592888 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig15.3839.1 >prot_S-ischiensis_contig15.3839.1 ID=prot_S-ischiensis_contig15.3839.1|Name=mRNA_S-ischiensis_contig15.3839.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=416bp
MPLFSCCSLMTADDGKDFDADYGDDEVPDASDGEPEPLDANSIVIHKKVL SLDPNALPVADVVKEPPMSPRALAAHKAAEEAAIAKAKAEMVAAAAAAAE EQRRLDQETSNRVAQAAHEAREEAEAAAAAASARAEKAKKLAEEEAAAAR EARRVALAEATALAAAQAMDATDGFTPGNTFQMTRRNVDDAEDSDMEDGF EELEAARLALEEAAAAENEAREAAENLEALRREEEAAKEAAQMAEEGARR AHEETETAKVGEKTAEAKAAEWAEHEAREATRIAAEDAEKAKRACEQARA NLLARLSDGKGVKVLKHSRNGKSVVRVIKSTDGLQTITWGSEKYEMAALI EVRHGADSDPTAPGARGTSLLRRSKSARVAMGRSFSLIFPKRSLDFTTDT EEEAEQLVAGFRACL* back to topmRNA from alignment at S-ischiensis_contig15:2589627..2593024- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig15.3839.1 ID=mRNA_S-ischiensis_contig15.3839.1|Name=mRNA_S-ischiensis_contig15.3839.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3398bp|location=Sequence derived from alignment at S-ischiensis_contig15:2589627..2593024- (Schizocladia ischiensis KU_0333) CTTACATTGAGCGTCAGCAAGCATAGCGTGTGAGTAGGAGTGAGCAAGCT
GGGTGCAAGACCGCTGGGGGGTGGACGTGGATTGCCCGTAGAACGACGTG
AAACGCGGGGCTGGGAGGCGCCCCTCGAGCGGAATCATGCCTCTCTTCTC
GTGCTGTTCGCTCATGACGGCCGACGACGGCAAGGACTTCGACGCAGACT
ACGGGGACGACGAAGTTCCCGACGCCAGCGATGGCGAGCCAGAGCCATTG
GACGCAAATAGTATCGTGATTCACAAAAAGGTGTTGTCGCTCGACCCCAA
CGCCTTACCGGTCGCCGACGTTGTCAAGGAACCTCCGATGAGCCCCAGGG
CCCTGGCGGCTCACAAGGCGGCAGAAGAGGCAGCTATCGCCAAGGCAAAG
GCTGAGATGGTAAGGATCAGTCTCTCGAGTACATATGCCATGCTTTCGCA
ACAGGTTCCCCACTTTGCCCGGCCATGTTTTCCCAGGCCATGCCCCACAT
GCATTTTGTGGCCTATTGCCCCCTAACATCGGGCCACGGACGCCATTTGC
AGGTGGCCGCGGCCGCAGCTGCCGCAGAGGAGCAGCGGCGATTGGACCAG
GAGACTTCCAATCGCGTGGCGCAGGCAGCTCACGAGGCCCGTGAGGAGGC
GGAGGCCGCAGCGGCTGCCGCCTCCGCTAGGGCTGAGAAGGCCAAGAAGC
TGGCGGAGGAGGAGGCTGCAGCCGCGCGGGAGGCCCGGCGGGTGGCCTTG
GCCGAGGCGACGGCCCTGGCGGCCGCGCAGGCGATGGACGCAACGGACGG
CTTCACCCCGGGAAACACCTTCCAGATGACGCGGCGCAACGTCGACGATG
CGGAGGACAGCGACATGGAGGACGGGTTTGAGGAGCTCGAGGCGGCGCGG
CTGGCACTGGAGGAAGCTGCAGCGGCTGAAAACGAGGCGCGCGAGGCGGC
TGAGAACCTGGAAGCCCTGCGGCGGGAGGAGGAGGCCGCGAAGGAGGCAG
CGCAAATGGCGGAGGAGGGCGCGAGGCGGGCCCACGAGGAGACGGAAACT
GCCAAGGTCGGGGAAAAGGTGTCGTGGTTACCCCGAGCGTACTCTGCAGT
GTGATTGCCAGTATGTACATAGTGCAGGCACCGGCGGCGCAATCGACTGA
CAGCGTGCGTGCGTGGGTGCGTGGGTGCTTGTGTGTTGGCGGCGGTCCCG
TTCGGGCGCAGCAGCGCCGTCCCTTGCCCCGGTTACCGGAAGACACACCC
CTACGAGTACTCGTACATGTTTCGGCAGGGTCCCTGTCCTTGTGAAGCGG
CTGAAAAATGCTTGGAAGTACAAAACACACACCACATCACGCCACACACA
CACGCGCGCGCCATGCAAACCCCACTTCCTCGGCCGCCGCCCGGTGAACC
GCACCTCTGCCCCCGTGTACATAGCTCTAGGTGTCACCGCTCCCTCGCCA
CCCCCCCCCCCTTGTGGACCGCGCCGCTCGCTCGCCCGATCCACCTTGTG
CCGCCCGAGCAGACTGCTGAGGCAAAAGCGGCGGAGTGGGCGGAACACGA
GGCCCGGGAGGCGACGCGGATTGCGGCGGAAGACGCGGAGAAGGCCAAGA
GGGCCTGCGAGCAGGCCCGGGCGAACCTGCTGGCCCGCCTGTCCGACGGC
AAGGGCGTGAAGGTGCTCAAGCACAGCCGCAACGGCAAGTCCGTGGTGCG
CGTGATCAAGAGCACGGACGGGCTGCAGACCATCACGTGGGGGAGCGAGA
AGTACGAGATGGCGGCGCTCATCGAGGTGTGTGTGTGTGTGCGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGCGTCTCCGTGCATGCCTGCGTCTCT
CGAGTGATGAATAGTGCGCATGTACTTTGTACGAGTATGTACGCAACATA
ACCGGGGCAGCGGGGAAGGATGCGTGGACCTCGCCGGGGGGGGGAGGGGG
GGCAACGGTTTCTCCCCGTTGGTCGGACTCCAAGACTGTCTCCCACCCCC
CCCACACCCCCCCCTCTCGTTTGCTTGTGTGCTCTCTCGTTCTGCCTGTG
AAATCTTACACTGTTCACTCTTGGGCAGCCAGAGCACCCCCGGCGCGGGT
TCTAATAACTCAGGGTGCTCATGCACCCTGCCTCCCAGACGCCTGCAATG
TGTGTTACATACTGTGGGACACGAGGGAGGCGAGGGCTGAGTGGTTCTTT
ATGTGCCATACAATAGTGCAGCAACCCTTGCACATGGCCCGACAACTCCG
TGTTCAGGCAGCGAGGATAGTGGGGGCTTTCAACCCTACGCGGAGCGTGG
TGCTCAAAACTCCGAACGCCACGCCGTGAATCTTACCGCTCGGCAGTTGC
ATTGTGCAGTGAGCGCATGAAAATGATCTGGTAGAGAATTTTGTGACAGG
CATGTCACCTCTCCCGGTGTCTGGCAGGAGCCGCCAGCCGGCATGTGTGC
ACCACGCTTTGCAGCTGCCGGGGCTGTTTGTTCTTCCTCCATATACTTTT
CAAGTATAGCGCACAGCACATACTCCCAATGCTACGTAGTGTTTTGAAGT
GCAGAGCACCCTACTACAGTAGTAGCTCCCACTAGTACTGAGTATGAGCA
ACACTTTCAAGTACTTCGAAGTACTAGCTTACACACAGTGGTGAGCTTTT
TTCTATGAACACCCCTGCAAGTACTCCATCTGGATCACCAGTGTAGAACA
AGATAGGTGCTGAGTACGACAACAGACACTTTCCAACCCAGCGCGTTTCC
CGTGGAAGCGCGCGGGCAGTCGCCGCGGCGCCAGCGTTGGTTGGTTCGCC
CCGCCACTTGAGGCCCGTCGCCTCACTTGACCCAGACCCCCCACCACAGA
GGGCCTTGCAGGCCGCACGCCAAGTGCTGCAAAGCTAAAACTCTGCATGC
TTCCGAGTACAACGCGCTGCGTCAAAGCAATAATGCCCAAGCTGCCTGAA
GGGGAGAGGAGATCTCTGCGCATTCGATAGCTCTACCGTGGACGAGTCGA
TTGCTTGCAACTCTTCGGCGCTTCACGCCGTTTCACGTGTGCTGGCTCAC
GTGATTGTGCCAGCTCCAGCGACTGCTCTTTTGCCACGTCACCGCCGCTG
ACCCCGTCCCCACACTGACACCAACCCCCCCTTTTCGCCCTCCCGACCCC
GCCCCCCCCCACCCACCACCCCACAACCACCACCACCGCCTCCACAGGTG
CGCCACGGGGCGGACTCGGACCCCACCGCGCCGGGGGCCCGCGGGACCAG
CCTGCTGCGGAGGTCCAAGTCGGCCCGGGTGGCCATGGGCCGCAGCTTCT
CCCTCATCTTCCCCAAGCGCTCCCTGGACTTCACCACGGACACGGAGGAG
GAGGCGGAGCAGCTGGTGGCCGGCTTCCGGGCGTGCTTGTGATTGCGG back to topCoding sequence (CDS) from alignment at S-ischiensis_contig15:2589627..2593024- >mRNA_S-ischiensis_contig15.3839.1 ID=mRNA_S-ischiensis_contig15.3839.1|Name=mRNA_S-ischiensis_contig15.3839.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2496bp|location=Sequence derived from alignment at S-ischiensis_contig15:2589627..2593024- (Schizocladia ischiensis KU_0333) ATGCCTCTCTTCTCGTGCTGTTCGCTCATGACGGCCGACGACGGCAAGGA CTTCGACGCAGACTACGGGGACGACGAAGTTCCCGACGCCAGCGATGGCG AGCCAGAGCCATTGGACGCAAATAGTATCGTGATTCACAAAAAGGTGTTG TCGCTCGACCCCAACGCCTTACCGGTCGCCGACGTTGTCAAGGAACCTCC GATGAGCCCCAGGGCCCTGGCGGCTCACAAGGCGGCAGAAGAGGCAGCTA TCGCCAAGGCAAAGGCTGAGATGATGCCTCTCTTCTCGTGCTGTTCGCTC ATGACGGCCGACGACGGCAAGGACTTCGACGCAGACTACGGGGACGACGA AGTTCCCGACGCCAGCGATGGCGAGCCAGAGCCATTGGACGCAAATAGTA TCGTGATTCACAAAAAGGTGTTGTCGCTCGACCCCAACGCCTTACCGGTC GCCGACGTTGTCAAGGAACCTCCGATGAGCCCCAGGGCCCTGGCGGCTCA CAAGGCGGCAGAAGAGGCAGCTATCGCCAAGGCAAAGGCTGAGATGGTGG CCGCGGCCGCAGCTGCCGCAGAGGAGCAGCGGCGATTGGACCAGGAGACT TCCAATCGCGTGGCGCAGGCAGCTCACGAGGCCCGTGAGGAGGCGGAGGC CGCAGCGGCTGCCGCCTCCGCTAGGGCTGAGAAGGCCAAGAAGCTGGCGG AGGAGGAGGCTGCAGCCGCGCGGGAGGCCCGGCGGGTGGCCTTGGCCGAG GCGACGGCCCTGGCGGCCGCGCAGGCGATGGACGCAACGGACGGCTTCAC CCCGGGAAACACCTTCCAGATGACGCGGCGCAACGTCGACGATGCGGAGG ACAGCGACATGGAGGACGGGTTTGAGGAGCTCGAGGCGGCGCGGCTGGCA CTGGAGGAAGCTGCAGCGGCTGAAAACGAGGCGCGCGAGGCGGCTGAGAA CCTGGAAGCCCTGCGGCGGGAGGAGGAGGCCGCGAAGGAGGCAGCGCAAA TGGCGGAGGAGGGCGCGAGGCGGGCCCACGAGGAGACGGAAACTGCCAAG GTCGGGGAAAAGGTGGCCGCGGCCGCAGCTGCCGCAGAGGAGCAGCGGCG ATTGGACCAGGAGACTTCCAATCGCGTGGCGCAGGCAGCTCACGAGGCCC GTGAGGAGGCGGAGGCCGCAGCGGCTGCCGCCTCCGCTAGGGCTGAGAAG GCCAAGAAGCTGGCGGAGGAGGAGGCTGCAGCCGCGCGGGAGGCCCGGCG GGTGGCCTTGGCCGAGGCGACGGCCCTGGCGGCCGCGCAGGCGATGGACG CAACGGACGGCTTCACCCCGGGAAACACCTTCCAGATGACGCGGCGCAAC GTCGACGATGCGGAGGACAGCGACATGGAGGACGGGTTTGAGGAGCTCGA GGCGGCGCGGCTGGCACTGGAGGAAGCTGCAGCGGCTGAAAACGAGGCGC GCGAGGCGGCTGAGAACCTGGAAGCCCTGCGGCGGGAGGAGGAGGCCGCG AAGGAGGCAGCGCAAATGGCGGAGGAGGGCGCGAGGCGGGCCCACGAGGA GACGGAAACTGCCAAGGTCGGGGAAAAGACTGCTGAGGCAAAAGCGGCGG AGTGGGCGGAACACGAGGCCCGGGAGGCGACGCGGATTGCGGCGGAAGAC GCGGAGAAGGCCAAGAGGGCCTGCGAGCAGGCCCGGGCGAACCTGCTGGC CCGCCTGTCCGACGGCAAGGGCGTGAAGGTGCTCAAGCACAGCCGCAACG GCAAGTCCGTGGTGCGCGTGATCAAGAGCACGGACGGGCTGCAGACCATC ACGTGGGGGAGCGAGAAGTACGAGATGGCGGCGCTCATCGAGACTGCTGA GGCAAAAGCGGCGGAGTGGGCGGAACACGAGGCCCGGGAGGCGACGCGGA TTGCGGCGGAAGACGCGGAGAAGGCCAAGAGGGCCTGCGAGCAGGCCCGG GCGAACCTGCTGGCCCGCCTGTCCGACGGCAAGGGCGTGAAGGTGCTCAA GCACAGCCGCAACGGCAAGTCCGTGGTGCGCGTGATCAAGAGCACGGACG GGCTGCAGACCATCACGTGGGGGAGCGAGAAGTACGAGATGGCGGCGCTC ATCGAGGTGCGCCACGGGGCGGACTCGGACCCCACCGCGCCGGGGGCCCG CGGGACCAGCCTGCTGCGGAGGTCCAAGTCGGCCCGGGTGGCCATGGGCC GCAGCTTCTCCCTCATCTTCCCCAAGCGCTCCCTGGACTTCACCACGGAC ACGGAGGAGGAGGCGGAGCAGCTGGTGGCCGGCTTCCGGGCGTGCTTGTG AGTGCGCCACGGGGCGGACTCGGACCCCACCGCGCCGGGGGCCCGCGGGA CCAGCCTGCTGCGGAGGTCCAAGTCGGCCCGGGTGGCCATGGGCCGCAGC TTCTCCCTCATCTTCCCCAAGCGCTCCCTGGACTTCACCACGGACACGGA GGAGGAGGCGGAGCAGCTGGTGGCCGGCTTCCGGGCGTGCTTGTGA back to top
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