mRNA_S-ischiensis_contig15.3648.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig15.3648.1
Unique NamemRNA_S-ischiensis_contig15.3648.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig15.3648.1 vs. uniprot
Match: A0A6H5KF56_9PHAE (TRAF-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF56_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 8.490e-22
Identity = 53/108 (49.07%), Postives = 63/108 (58.33%), Query Frame = 1 
Query:   34 CMHGCGLMVRVQDGKDHEEICPRAPTLCLLHTEGCSWSGPRGTLGQHLAACRAWSVKCPICGCFLARWEYGEHVLAHSLLQSELPALFPPECHLRAYGCRARRPPPAA 357
            C   CG   +++D +DH E+CP AP  CLL  +GC W G R    +HLAAC  W V CP C   +   E+G H+L HS   SE PAL PP C LRAYGC A R  P A
Sbjct:  691 CRLQCGAAPKIEDAEDHLEVCPLAPVDCLLRADGCVWKGTRRQRRRHLAACPMWQVMCPGCCRAVHVAEFGRHLLGHSAA-SESPALNPPGCPLRAYGCLACRAAPPA 797
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig15.3648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KF56_9PHAE8.490e-2249.07TRAF-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig15contigS-ischiensis_contig15:1228670..1232367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size846
Cds size846
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig15.3648.1prot_S-ischiensis_contig15.3648.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig15 1228670..1232367 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815736.1337533-CDS-S-ischiensis_contig15:1228669..12287591622815736.1337533-CDS-S-ischiensis_contig15:1228669..1228759Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 1228670..1228759 +
1695739884.2902102-CDS-S-ischiensis_contig15:1228669..12287591695739884.2902102-CDS-S-ischiensis_contig15:1228669..1228759Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 1228670..1228759 +
1622815736.1444595-CDS-S-ischiensis_contig15:1229661..12298091622815736.1444595-CDS-S-ischiensis_contig15:1229661..1229809Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 1229662..1229809 +
1695739884.2985506-CDS-S-ischiensis_contig15:1229661..12298091695739884.2985506-CDS-S-ischiensis_contig15:1229661..1229809Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 1229662..1229809 +
1622815736.154155-CDS-S-ischiensis_contig15:1230636..12310301622815736.154155-CDS-S-ischiensis_contig15:1230636..1231030Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 1230637..1231030 +
1695739884.3081799-CDS-S-ischiensis_contig15:1230636..12310301695739884.3081799-CDS-S-ischiensis_contig15:1230636..1231030Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 1230637..1231030 +
1622815736.1712224-CDS-S-ischiensis_contig15:1232153..12323671622815736.1712224-CDS-S-ischiensis_contig15:1232153..1232367Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 1232154..1232367 +
1695739884.3188527-CDS-S-ischiensis_contig15:1232153..12323671695739884.3188527-CDS-S-ischiensis_contig15:1232153..1232367Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 1232154..1232367 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig15.3648.1

>prot_S-ischiensis_contig15.3648.1 ID=prot_S-ischiensis_contig15.3648.1|Name=mRNA_S-ischiensis_contig15.3648.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=282bp
VPAPALPHWQACMHGCGLMVRVQDGKDHEEICPRAPTLCLLHTEGCSWSG
PRGTLGQHLAACRAWSVKCPICGCFLARWEYGEHVLAHSLLQSELPALFP
PECHLRAYGCRARRPPPAAGRAPWAGAEGPRADPEAGARAGPEAGARAGP
SSGHCTARCPHYRVVCKSCGEVVRRGDIESGGHGCRPRMVAVVVATEKPD
TLGAGVLRNRQWLHLVHGAGPGNCYSRGGGGSCGDIYADDDDGAFAFVNP
MCAMPLMPGRRMPTPMPPQRAEESPRAGAGA*
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mRNA from alignment at S-ischiensis_contig15:1228670..1232367+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig15.3648.1 ID=mRNA_S-ischiensis_contig15.3648.1|Name=mRNA_S-ischiensis_contig15.3648.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3698bp|location=Sequence derived from alignment at S-ischiensis_contig15:1228670..1232367+ (Schizocladia ischiensis KU_0333)
GTGCCCGCGCCGGCGTTGCCTCATTGGCAGGCGTGTATGCACGGGTGCGG
CCTGATGGTGCGGGTGCAGGACGGCAAGGATCATGAGGAGGTGAGCTGGG
CATTTGGTGCGGGCGGGTCGGGTTGTTATTTGGCGCCGGGGGCTGCATAA
GTGCTCCCCCCCTTCTCCTCCAGTGAGTACTTTGTATGCACAGTACAGTA
GTTTGCTCTGTACTACTTGCATGCACGGATATTGTCGGTGACCTAGCGGT
CGGGATCGATCATCTTGATCGTTCCTCCCGTGACCGTTAGGATGCCGGTG
CGCCCAAGCGCAACTCTGCGCAGAGACTCACACAAGTTCTCGCCGACGGC
TATGCTTTGTCGTAGTCTAGCGAGCGGCCCCTCATCCGGCTTGCCGACGC
CAAGGCGTCATGGCATTCCGGGCTTGGCCAGTGCACGGCCTGGCCGGTGC
AAACCCGGCATGCTCCGTCCCGGCCTAGTTGGGACGCGAGAGTCCATGGC
TAAATAGCTGCTCCTGTCGGAGGGCAAACCCGAAGTTTCGACTTAGGGCT
GTCGGCATTGCACGCACGGTTATGTCGCAAGACAAGCCAATGAGTACATA
TATACTACTGGCATGTACTCGTAATATGTACTGTATCCGCGTTGTGCCAC
AAGACAAGCCAATGAGCACGTAGGTACTAGTCCCGAGACCATTCACCACA
CACCTCGATCGAGACGGAGCAGCACTTACTGTTAGATCTATTCCCCAATG
ACTAACACAGACATTGGAAAGTACTTTAGCTAGGTACTGGAGTGCTAACT
TCCCTACAATCGCTACCAGCACCGTACCGTAGCCAGTATGGTGGAGGAAG
CATATGCAGCTACAGTGTGAGGGGTACAGTACCGTAGCGCAATTCCTTCA
CCGGGGATGCCATTGTCCCGGTTTCTCAGTTGTGGGCCTACCATACCCCC
CCCCTCCCCTTTCTCCCCCTTCCCCCTTCCTGCCTCCGCCAGATCTGCCC
CAGGGCGCCCACTCTCTGCCTCCTTCACACAGAGGGGTGCTCGTGGTCTG
GGCCCCGGGGGACGCTTGGCCAACACCTGGCTGCCTGCAGGGCCTGGTCC
GTTAAGTGCCCCATATGCGGGTGTTTCCTGGCGCGGTGGGGTAAGTGGTA
ACACCCAATACACCCGCGCGTGATTGCAGGCCGCCAGGGCCTGGTCCGTT
AGGTGCCCCATGTGCGGGTGTTACCTGGCGCGGGGGGGTAAGTGCGAGGC
CCGCGTAGGTAGCCTCTGAGAAGCAGCCCAGGCCCGCCCGTGCCCATATG
CTCGGTAGCTTACGCACGCCTTGCAGGAAACTCGCTCATTGGACGCTGGC
AAGGCCAGGAGCGACGACGCTCGTACTGCTCTGCAGGTAGTGTAGCACGG
GTATCTGCTTGAGGGCAGGAGCGCTGCGTCCCGCCAGACGCTCTCTACTC
TAGAGATGAACACAGCTACGAGTACCTTTTCTACCGGCTCGGGCGGTAGA
AAAGCCTTTTTTACCGGCTTCGGCTGTTCGACCACCCCCGATGCCAACCG
CGCATGATCTGGCTGTTCATCGATGCACAGACCATGCCAACGCTGGCACC
AACAAACCAACGGCGCCAGCTTTACTGGCCAGCACATCATCTCCCGCGCA
CGCCTCCCTCCTGAAGAAGCCCCCCACTGCCCCCAGCCCCCCCTCCCTGA
CCCTCCCCGCCCCAGCCCCCTCCCCACAACACAGCCTTTCTCACCCTCCC
CCGTCCTTGTTTTTAGTTCCTCGATGTGATAGTCACCAATATAAGAACAC
TCAGTTCTTAAATGGGACAAGTACTAATACGAGAACAGTCAGTCTCACAC
ACGTGCGATTGTACTCGAGTACCTCGTTGCAATTTATATTAGTCACAACC
TTTCTCTCCCTCCCCCAATCCCCCCCCCCGGTCCTCGCCCCCTTGTTACA
CCGCTCCACCCACGCAGAGTACGGTGAGCACGTCCTGGCACACTCCCTCC
TCCAGAGCGAGTTACCGGCGCTCTTCCCGCCCGAGTGCCACCTACGGGCC
TACGGCTGCCGGGCCCGTCGCCCTCCCCCCGCTGCCGGCCGTGCACCATG
GGCAGGAGCTGAAGGGCCCAGAGCCGATCCCGAGGCCGGGGCCAGGGCCG
GTCCCGAGGCCGGGGCCAGGGCAGGGCCTTCGTCGGGCCACTGCACGGCC
CGCTGCCCCCACTACCGGGTCGTGTGCAAGTCCTGCGGGGAGGTTGTGCG
GCGGGGGGACATTGAGTCGGGCGGGCACGGGTGCCGGCCGCGGATGGTGG
CGGTGGTGGTGGCGACGGAGAAGCCCGACACTTTGGGGGCCGGGGTGCTC
CGAAACCGCCAGTGAGTCACGTACTAGTACCAGGGTTGGCACTTGACCCC
TAGGTGGTGACCTTTTAGGCCCTTAATGAGAGGTAGCTAGGGGTAGTTAG
ACCTAAAATGAAGGCTGATTAGGCCCTAGTTACCCTCTAAGTGCCAACCC
TGCGTACTACTGTACTCGAAGTGCGTGGAAGTAGAAGTACTGGTACTGTA
TGTAGTACTGCTACTGTAGCGTTGGTTCTTCGAGCGCTCTGATTTGGGGC
GTAGTGGGCTGCGGTTGTGGCTGCTGCCGCGGGAAAGTGCGAACGCGAAC
GCACGTGGCATCACCGTGACAAATGACGATTCGCGCCCGTGCGACCGACA
GGCTGCCCTAACCCTTCAAGTCCATTTATGAAAGGAAGGTGCGCAAAACG
ACAGTGAGTAGTAAAGAGCAGCGTGCTTTGACGTGCTGCAGTAGGTTGTC
CTCGAGTGCAATAGGTACAGGTTTGTAGTTGGGGTTTTATCATTATTTAC
ACGAAGCAGGTATGGTATTACTTCGAAGTATTTTTTTTTCGTACGGGATG
ATTTTGCTTCAAAGTACTGCGAAGTACTTGAGTACGGAACCTACCTTCGA
AGGTACGCTAAACGACACTGATAAGTGTGGACGTGCTCGCAAGTATCGCA
AGTACTGCAGTGGCCCTCGCAAAGAAGGTTTAGCTCTATACTTGTAGTAG
GAGGGCAAACCCGAAGGTTCGACTTAGGGCTGTCGGCATTGCACGCAAGG
TTATGCCGCAAGACAAGCCAATGAGTACATATATACTGTACTGTAGTAGG
GGATGACTGCTCTGTACCTCTGCCCCGGGTGTGGCAGTGCCCTGTGACTG
CTTCTCCAACCCATCTGAGCAGCAGGGACAATACAGAGGCTACAGTAGTG
TGGGCCACGTCACTAAAGACCAGGCTCAACAACAGTGGCGTTTCCTTCGC
TCGCCAGGGAGGCAGCGTGGCACGGAAAGGCGGGAAGGAGGAGCAGGAGG
AGGCGGAGGAAAAGAGGAAGAACCCTCCAGTACGTGGAATACCATACCGG
TCTGTCTACTACTTTGTACTTACAGTATGCCCACTGCCTGCCGCCCACCC
ACCCGCCTGCCCCCGGCCCCCccctCCCCCCCAGGTGGCTTCACCTCGTG
CACGGCGCCGGCCCGGGCAACTGTTACAGCCGAGGCGGTGGCGGCAGCTG
TGGCGACATCTACGCGGACGACGACGACGGCGCCTTCGCCTTTGTCAACC
CTATGTGCGCAATGCCGCTCATGCCCGGGCGCAGGATGCCCACCCCCATG
CCACCGCAGCGCGCCGAGGAGTCCCCGCGAGCAGGCGCGGGGGCGTGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig15:1228670..1232367+

>mRNA_S-ischiensis_contig15.3648.1 ID=mRNA_S-ischiensis_contig15.3648.1|Name=mRNA_S-ischiensis_contig15.3648.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1692bp|location=Sequence derived from alignment at S-ischiensis_contig15:1228670..1232367+ (Schizocladia ischiensis KU_0333)
GTGCCCGCGCCGGCGTTGCCTCATTGGCAGGCGTGTATGCACGGGTGCGG
CCTGATGGTGCGGGTGCAGGACGGCAAGGATCATGAGGAGGTGCCCGCGC
CGGCGTTGCCTCATTGGCAGGCGTGTATGCACGGGTGCGGCCTGATGGTG
CGGGTGCAGGACGGCAAGGATCATGAGGAGATCTGCCCCAGGGCGCCCAC
TCTCTGCCTCCTTCACACAGAGGGGTGCTCGTGGTCTGGGCCCCGGGGGA
CGCTTGGCCAACACCTGGCTGCCTGCAGGGCCTGGTCCGTTAAGTGCCCC
ATATGCGGGTGTTTCCTGGCGCGGTGGGATCTGCCCCAGGGCGCCCACTC
TCTGCCTCCTTCACACAGAGGGGTGCTCGTGGTCTGGGCCCCGGGGGACG
CTTGGCCAACACCTGGCTGCCTGCAGGGCCTGGTCCGTTAAGTGCCCCAT
ATGCGGGTGTTTCCTGGCGCGGTGGGAGTACGGTGAGCACGTCCTGGCAC
ACTCCCTCCTCCAGAGCGAGTTACCGGCGCTCTTCCCGCCCGAGTGCCAC
CTACGGGCCTACGGCTGCCGGGCCCGTCGCCCTCCCCCCGCTGCCGGCCG
TGCACCATGGGCAGGAGCTGAAGGGCCCAGAGCCGATCCCGAGGCCGGGG
CCAGGGCCGGTCCCGAGGCCGGGGCCAGGGCAGGGCCTTCGTCGGGCCAC
TGCACGGCCCGCTGCCCCCACTACCGGGTCGTGTGCAAGTCCTGCGGGGA
GGTTGTGCGGCGGGGGGACATTGAGTCGGGCGGGCACGGGTGCCGGCCGC
GGATGGTGGCGGTGGTGGTGGCGACGGAGAAGCCCGACACTTTGGGGGCC
GGGGTGCTCCGAAACCGCCAAGTACGGTGAGCACGTCCTGGCACACTCCC
TCCTCCAGAGCGAGTTACCGGCGCTCTTCCCGCCCGAGTGCCACCTACGG
GCCTACGGCTGCCGGGCCCGTCGCCCTCCCCCCGCTGCCGGCCGTGCACC
ATGGGCAGGAGCTGAAGGGCCCAGAGCCGATCCCGAGGCCGGGGCCAGGG
CCGGTCCCGAGGCCGGGGCCAGGGCAGGGCCTTCGTCGGGCCACTGCACG
GCCCGCTGCCCCCACTACCGGGTCGTGTGCAAGTCCTGCGGGGAGGTTGT
GCGGCGGGGGGACATTGAGTCGGGCGGGCACGGGTGCCGGCCGCGGATGG
TGGCGGTGGTGGTGGCGACGGAGAAGCCCGACACTTTGGGGGCCGGGGTG
CTCCGAAACCGCCAGTGGCTTCACCTCGTGCACGGCGCCGGCCCGGGCAA
CTGTTACAGCCGAGGCGGTGGCGGCAGCTGTGGCGACATCTACGCGGACG
ACGACGACGGCGCCTTCGCCTTTGTCAACCCTATGTGCGCAATGCCGCTC
ATGCCCGGGCGCAGGATGCCCACCCCCATGCCACCGCAGCGCGCCGAGGA
GTCCCCGCGAGCAGGCGCGGGGGCGTGAGTGGCTTCACCTCGTGCACGGC
GCCGGCCCGGGCAACTGTTACAGCCGAGGCGGTGGCGGCAGCTGTGGCGA
CATCTACGCGGACGACGACGACGGCGCCTTCGCCTTTGTCAACCCTATGT
GCGCAATGCCGCTCATGCCCGGGCGCAGGATGCCCACCCCCATGCCACCG
CAGCGCGCCGAGGAGTCCCCGCGAGCAGGCGCGGGGGCGTGA
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