mRNA_S-ischiensis_contig14.3399.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig14.3399.1
Unique NamemRNA_S-ischiensis_contig14.3399.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig14.3399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig14contigS-ischiensis_contig14:2500998..2501830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size833
Cds size585
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815707.585352-UTR-S-ischiensis_contig14:2500997..25012451622815707.585352-UTR-S-ischiensis_contig14:2500997..2501245Schizocladia ischiensis KU_0333UTRS-ischiensis_contig14 2500998..2501245 +
1695739864.7559025-UTR-S-ischiensis_contig14:2500997..25012451695739864.7559025-UTR-S-ischiensis_contig14:2500997..2501245Schizocladia ischiensis KU_0333UTRS-ischiensis_contig14 2500998..2501245 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815707.595865-CDS-S-ischiensis_contig14:2501245..25018301622815707.595865-CDS-S-ischiensis_contig14:2501245..2501830Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2501246..2501830 +
1695739864.7644584-CDS-S-ischiensis_contig14:2501245..25018301695739864.7644584-CDS-S-ischiensis_contig14:2501245..2501830Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2501246..2501830 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig14.3399.1prot_S-ischiensis_contig14.3399.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig14 2501246..2501830 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig14.3399.1

>prot_S-ischiensis_contig14.3399.1 ID=prot_S-ischiensis_contig14.3399.1|Name=mRNA_S-ischiensis_contig14.3399.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=195bp
MPSTASTVAAAMLQLIQVQPLLYTTRTPRYVLSQAAPPKNKKMDSSSFEF
SDDRLPPPGPRGKMHWDAQAATTGPGTANLVRDNVKYIPGHTYVACARYY
KNARESQRGKGKKVPDRRYFARVVPVIPGSIQSAILLPGSSQKPRGRHGT
FRMCSRALQSTSDLPVRTLTRTLVRSAAAAAITVAATGPPDLRCL
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mRNA from alignment at S-ischiensis_contig14:2500998..2501830+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig14.3399.1 ID=mRNA_S-ischiensis_contig14.3399.1|Name=mRNA_S-ischiensis_contig14.3399.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=833bp|location=Sequence derived from alignment at S-ischiensis_contig14:2500998..2501830+ (Schizocladia ischiensis KU_0333)
CCTGAATCGCATGTAGTCCGCTAGCCCGCGTACTCATTGACAAGTACGTG
GGGTGCATCGATAAAGCGGTCGCAAAATGCTTCCAAGTACAATTATTGAA
TTGTTGTGACGGTATGCGATACAATACAATTTCCAAGAGCACGCCTGACG
GACTCTAGCAACTGTGGTGTCTCCACTGGTAACTCAATGTACTACTGGAA
CTGCAGAGCATACACCGGCAGAGCTTTGGGGAAGCTGCTGCCGTGGCGAT
GCCAAGCACAGCGTCCACAGTTGCAGCTGCTATGCTACAGTTAATTCAAG
TACAACCGTTGCTCTACACCACCAGGACGCCCCGGTATGTACTATCCCAG
GCAGCCCCCCCAAAAAACAAGAAAATGGACAGTAGCTCTTTCGAGTTCAG
CGACGATCGACTCCCGCCCCCCGGCCCGCGTGGCAAAATGCACTGGGATG
CACAGGCGGCGACAACTGGACCAGGCACAGCTAATTTAGTGCGTGACAAT
GTGAAATATATACCGGGACATACCTATGTGGCATGTGCCCGTTACTACAA
AAATGCGCGCGAGTCGCAACGAGGAAAAGGAAAAAAGGTCCCGGACCGCC
GATACTTCGCCCGAGTCGTGCCAGTGATCCCAGGCAGCATACAGAGTGCT
ATACTCCTGCCCGGCAGCTCGCAGAAGCCGCGCGGCCGCCACGGAACCTT
CCGGATGTGCTCACGAGCGCTGCAAAGCACCTCAGACCTGCCCGTACGTA
CGTTAACCAGGACTCTCGTAAGATCGGCCGCCGCCGCCGCCATCACCGTG
GCCGCCACCGGGCCACCCGACCTCCGGTGCCTC
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Coding sequence (CDS) from alignment at S-ischiensis_contig14:2500998..2501830+

>mRNA_S-ischiensis_contig14.3399.1 ID=mRNA_S-ischiensis_contig14.3399.1|Name=mRNA_S-ischiensis_contig14.3399.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1170bp|location=Sequence derived from alignment at S-ischiensis_contig14:2500998..2501830+ (Schizocladia ischiensis KU_0333)
ATGCCAAGCACAGCGTCCACAGTTGCAGCTGCTATGCTACAGTTAATTCA
AGTACAACCGTTGCTCTACACCACCAGGACGCCCCGGTATGTACTATCCC
AGGCAGCCCCCCCAAAAAACAAGAAAATGGACAGTAGCTCTTTCGAGTTC
AGCGACGATCGACTCCCGCCCCCCGGCCCGCGTGGCAAAATGCACTGGGA
TGCACAGGCGGCGACAACTGGACCAGGCACAGCTAATTTAGTGCGTGACA
ATGTGAAATATATACCGGGACATACCTATGTGGCATGTGCCCGTTACTAC
AAAAATGCGCGCGAGTCGCAACGAGGAAAAGGAAAAAAGGTCCCGGACCG
CCGATACTTCGCCCGAGTCGTGCCAGTGATCCCAGGCAGCATACAGAGTG
CTATACTCCTGCCCGGCAGCTCGCAGAAGCCGCGCGGCCGCCACGGAACC
TTCCGGATGTGCTCACGAGCGCTGCAAAGCACCTCAGACCTGCCCGTACG
TACGTTAACCAGGACTCTCGTAAGATCGGCCGCCGCCGCCGCCATCACCG
TGGCCGCCACCGGGCCACCCGACCTCCGGTGCCTCATGCCAAGCACAGCG
TCCACAGTTGCAGCTGCTATGCTACAGTTAATTCAAGTACAACCGTTGCT
CTACACCACCAGGACGCCCCGGTATGTACTATCCCAGGCAGCCCCCCCAA
AAAACAAGAAAATGGACAGTAGCTCTTTCGAGTTCAGCGACGATCGACTC
CCGCCCCCCGGCCCGCGTGGCAAAATGCACTGGGATGCACAGGCGGCGAC
AACTGGACCAGGCACAGCTAATTTAGTGCGTGACAATGTGAAATATATAC
CGGGACATACCTATGTGGCATGTGCCCGTTACTACAAAAATGCGCGCGAG
TCGCAACGAGGAAAAGGAAAAAAGGTCCCGGACCGCCGATACTTCGCCCG
AGTCGTGCCAGTGATCCCAGGCAGCATACAGAGTGCTATACTCCTGCCCG
GCAGCTCGCAGAAGCCGCGCGGCCGCCACGGAACCTTCCGGATGTGCTCA
CGAGCGCTGCAAAGCACCTCAGACCTGCCCGTACGTACGTTAACCAGGAC
TCTCGTAAGATCGGCCGCCGCCGCCGCCATCACCGTGGCCGCCACCGGGC
CACCCGACCTCCGGTGCCTC
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