mRNA_S-ischiensis_contig14.3338.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig14.3338.1
Unique NamemRNA_S-ischiensis_contig14.3338.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig14.3338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig14contigS-ischiensis_contig14:2007368..2011871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size487
Cds size486
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig14.3338.1prot_S-ischiensis_contig14.3338.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig14 2007368..2011871 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815702.7249782-CDS-S-ischiensis_contig14:2007367..20074061622815702.7249782-CDS-S-ischiensis_contig14:2007367..2007406Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2007368..2007406 +
1695739862.375828-CDS-S-ischiensis_contig14:2007367..20074061695739862.375828-CDS-S-ischiensis_contig14:2007367..2007406Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2007368..2007406 +
1622815702.7361977-CDS-S-ischiensis_contig14:2008887..20089891622815702.7361977-CDS-S-ischiensis_contig14:2008887..2008989Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2008888..2008989 +
1695739862.3840854-CDS-S-ischiensis_contig14:2008887..20089891695739862.3840854-CDS-S-ischiensis_contig14:2008887..2008989Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2008888..2008989 +
1622815702.7466967-CDS-S-ischiensis_contig14:2010788..20109651622815702.7466967-CDS-S-ischiensis_contig14:2010788..2010965Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2010789..2010965 +
1695739862.3954482-CDS-S-ischiensis_contig14:2010788..20109651695739862.3954482-CDS-S-ischiensis_contig14:2010788..2010965Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2010789..2010965 +
1622815702.7596962-CDS-S-ischiensis_contig14:2011703..20118711622815702.7596962-CDS-S-ischiensis_contig14:2011703..2011871Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2011704..2011871 +
1695739862.4032648-CDS-S-ischiensis_contig14:2011703..20118711695739862.4032648-CDS-S-ischiensis_contig14:2011703..2011871Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2011704..2011871 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig14.3338.1

>prot_S-ischiensis_contig14.3338.1 ID=prot_S-ischiensis_contig14.3338.1|Name=mRNA_S-ischiensis_contig14.3338.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=162bp
MRGGDGRLHTMSTLLRQSVAQMEIEIILGDVVECAWGLITQRQKAALEEA
RRASLLGDDDDDGMSQSRASRHSLDNSELRLASSSSEGGLHDDPDEDLEL
SSSSRQGHHHPPGRGSRREDSKEEIEHGGAMGGGGGRGRGSIARRPRVKT
IDRSGGGDGSGG
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mRNA from alignment at S-ischiensis_contig14:2007368..2011871+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig14.3338.1 ID=mRNA_S-ischiensis_contig14.3338.1|Name=mRNA_S-ischiensis_contig14.3338.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4504bp|location=Sequence derived from alignment at S-ischiensis_contig14:2007368..2011871+ (Schizocladia ischiensis KU_0333)
ATGAGGGGAGGGGATGGACGCCTCCACACCATGAGCACGGTGAGCAGGCG
GGGGTTTTGCACGCGGTTGGGCGGCGTGTGCAGTAGAGTTTGCATGAGAG
GAGGGGATGGACGCCTCCACACCATGAGCGTGGCGAGCGAGCGGGTGTGA
TTCATATATAAATCGTAACACGTGTGTGAGATTGAGTGTTCTCGTGCTAG
TGGTCATCGCATTTAAGAATTGAGCGTGCTACTACTATATAGTAGTGCTA
GTATTGGTCCTTATCACATTAATTAGCGTGGTATTCTTTGAAACCGCACT
GGGCTCGCCGGAGCGGTGCCTAGTACGTGCCACACGGGTGCGTCGGTGTG
CAACCCATGCCTGCCTGGCCAAGGAGGTGCAAACCCGGCGTGCTCCGTCC
CGGCATCGTGAGGGATGCGAGGCCAGCGGGCCAAGAGGCTACTACACCTA
CTGTAGTCGGCGGAGACATATTGCCCCCACGGGACAATTTTCGGGGAATA
TTTCTGGCCGAGAGTGTCCTGAACTGTCCCGAAAATCTCCGAAAAGTTCC
CCAGGTCCTGAGGGAGGTTTTCCGAGTTAGGCCGCGCGAATCGGACCGGT
ATTCGGCGAGAAAGGTTCTCCGAAAATTGGCATGGGGGGGCAAGATCTCT
CCGCCGACAACGGTACCCTGCCGGGGCTGGCCGACGGTCCAGCAAGTAGT
GCGAGTATACTACTGTGATGTGATGTGATGTGATGCGTACCCTGGCCGGC
GGTCCAGCAAGTAGTGCGAGTATACTACTGTGATGTGATGTGATGTGATG
CGTACCCTAATGTACTATAGTTTGACATCACATCACATCACATCATCACA
TCAATGTCCAGCAAGTAGTGTACTGGGCCGGCGGTCGGTGGCATGCACAG
GACGGATGCCCCCTGTCCGACGTGTACATATGACACTCAGGCGTGTCCTA
CAGAGTGCGCTGCTACATAGTGCGGCCCTTCCCCACCCCGTCCTTTTCTT
CTTTCTTTTTGTGTTCTTCTTGGCCTGCGGGGGAAGGAAGGGCTTCCATT
GAGTCCTGTTTTGGGAGACGAGCCTTTTGGCACGGGGCTTGGAACTCGCC
GCTTTTCTACCCTTCAGGTAGCGCGGGTGGCTAATGGTGGTAGCATTAGG
CCACAGTTGCTGCGAGGCCGGGGCCGCAGCGTGCTTTGTCCGACGTGACA
GGAATCAGAGTTTTCCATCCCGTAGGTAGGGTCCGCCCGTGTGGGCCGCG
GGGCCACTCACACACTCAAGGCCGCAGCGAGAAAGCAACTCACGAGGAAC
CTGCCCCCCCAGGATTGGCACTTACCCCCTGAGTGGTGCCTTTTTAGGCC
CTTAAATCTACCGGGCCCCGCGGTTTTCCTACCCTAGTAGAGGTAATTAG
GGGTAGTTAGACCTAAAATACAGACTACTTCTAAAGGCCCTAGTTAACCT
CCAAGTGCCAACCCTGTCCCCCCCCCCCTCTCTCCCCCCTCCGCCCCCCG
CCATCGTTGCGACGCAGCAGCTGCTGAGGCAAAGCGTGGCACAGATGGAG
ATAGAGATCATTCTGGGCGATGTGGTGGAGTGCGCCTGGGGCCTGATCAC
CCAGAGGCAGAAGGCAGCGCTGGTCAGTGATGGAATATCTAGGCGAATCA
ACCTATTTGTCAACAGTACTGATCTACGAAGTACAAAGTATATATCTATC
GATAGTCGATATTCGATAGTTTGACCCACACTAAATCCAAGTAGTTAGTG
CTGCAGATGAAGGTGGGGATATTTGTGGGCTATGTGGTGGAGGGCGCCTG
GGACCTCATCACCCGGAGGTAACCATGGTACACAATTGCGATCGCTATTT
TTGGTGCCAGGGCCGCCCTATGAAGGACGCATCGGATGACCGTGAAATTT
GAAATATGAAAGAGCTCGATGAGTACGTTCATTTGCGCTACAGTTTTCGT
ATCACAGCATCACATGGACCGAGAAACAGGCCAATCGATATTCGATAAAA
ACACTTCGGCAAAAATAATCGCACTTTTGTACCATGGTTGCCCGGAGGCA
GAAGGCGGGCTGGTGAGCGGACGGGACGAACCCGTGACCGTGAATTCTGT
CCTGTACAGTTGTACTTCGAAGTAGGTCTTTTTGTGGAAAGAAAAGAAGC
GAATGGAAAATAGAGGTGATCCTACTTTTGCGAGTTCCGAGCCCCAACAC
GGATGCAGTTGTAGCTCTTTCCGGACGATTGTAGACCAAGCCACGCAACA
ATCTGCCAAGCTCTCGAAAGAATGATTTGTGCGGCGAGTAGTGAGGCGTT
GGCGCACGTCCTCTCGTGCTCGGAAGAACCCGTGACCATGAATATTGTAC
TCGTACAATTGTAGCTCTTTCCGGTTGGTGGTAGACTAAGCCATGCAACA
CTGCCAAGCTCTCGAAGGAATGATTTTTGCTCGAAGGGATGAATTTGGCA
GCGAGTAATGAGGCGTTTGCACACCTTCTCCTCTCATGCTCGGAAAAAGT
GTATAAAGTGCCGCTTGTAAATAAGTAGCGCTGCGGGCAAAGCGTTTGGG
AGACCTCTGTCAACTGCGTGCACTATATATACATGTTCGAGTACGTACTC
TGCTGTATGTACTCGAGTAGTAGGTACTTCAGTACTGCTGTACGGTGTGT
ACGTACAGTTCCGCAGTCGTCGAAGAGATCTTGCCCCCCCGCGCCAAGGT
TAGGGAGAACTTTTCTCGCCGAATACTGGTCGGATTTGCGTGGGAAAACT
CGGAAAATCTCCCTCAGGACCTGAGGGAAGTTTTGGGAGAATTTTCGGGA
CGATTCAGGACCTTCCGGGCTATCAATATTTCCCCGAAAATCGTCCCGTG
GGGGCAAATCTCTCCGACGATTTCGGTAGTACCTGAACCTGGGAGGGGTT
GATGCCCGTGCGCTGCACTGCACCAACTCACGGCCCTTGAGGGGGGGTTT
CGTGACAAGTCAGTCAGTCGGCGTGCTCGCTCGAGTATGGCACGGTATAG
TGCAGTGCAGTGCTGCAGCGCATCTCCCCAAAAACTTCATGCGCCGCATC
ACATCACGTCGCGTCGCATCGCCCGCGTCGCATCGCATCACATCACATAG
TATCACATGGCATCGCATCGCATCGCCCGCGTCACGTCACGTCGCGTCGC
ATCGCCCACGTCGCATCACATCACATCGCATCACACCACATCACATCACA
TCGCATCACATCACATCACATCACGTCACATCGCATCGCGTCACATCGCA
TCACATGGCCGCAAACTAACCCCAACCCCCCCCACGGTAGGTAGTTTCGT
ACCTACAGTTGCACCTGTACGGTATGTGCTCAGACCACACTGATCATTGC
GTCGGGTAATGATAACGCAACCCCCCCCCCCTATATCGTGCCCCCGACAC
CCCCACTGACCTCCTTCACAGGAAGAAGCGCGCCGGGCCAGCCTCCTGGG
CGATGACGACGATGACGGCATGTCACAGTCCCGTGCCTCCCGCCACTCCC
TCGACAACAGCGAGCTTCGCCTTGCGTCCTCCTCCTCTGAGGGCGGCCTC
CACGACGACCCCGACGAGGACCTGGAGCTCTCCTCTTCCTCTCGCCAGGT
ACTTAACCCTTTTCCCCCTGGTAAATCGGACTTGCACACTAAAACCCTAT
GAATATACGGACCCCAGAGGGAAAAGGGTTAACCATGGAAGTACAAAGGT
GCTTTTTTTTTTGCCCAAATAGTTTACAATTGCTACTTGTCGAAAACCTC
TACGATGACCCTGACGAGGAGCTGGAGCTCTTCTCTTGCTCTCGCCAGGT
ACTTAACCATGGTACAAAAGTGCAATTTCTTTTGCCCAAATACTTCGTAC
TTGGTTTGTTGCGATATCGGAAATTTTCTCCGCCTTCCGTCCTACTCCTT
TGAGGGCGGCCTCCACGATGACCCCGGCGAGGAGCTGGAGCTCTCGTCTT
CCTCTCGCCAGGTACTTGACCATGGTACAAAAGTGCGATTTTTTTTGCCC
AAATACTGTAAGTAGTTTTTGGCATGAAGATAAAAAGCGAGTGGGAAAGA
AGAGGTGTTCCTACTTGCGCGAGTTCAGGGCCCCCCATCCCCGGAAGCCC
GTCATTTCACTCGCCTTCACTCGCAGGGCATACAGAGCAAAACACAACGA
AGAAGTAGTTTGTTGCGATACTTGTCGAAAATTTCCGCCTGAATTGCTAC
TGGTTGAAAACCGGCCCAAACTCGATACTCGTGCATATTTTCCCAAAAAT
ATCGATTTGGTCGACTTGTAAGTAGCCCCAAATTTATTGCCATTTTTTTA
ACGTCAATCGCACTTTTGTACCATGGTTATCGCCAGGGACACCACCACCC
CCCGGGCCGAGGCAGCCGCCGGGAGGACAGCAAGGAAGAGATTGAGCACG
GCGGTGCTATGGGGGGCGGCGGCGGCCGCGGCCGCGGGAGCATCGCTAGG
CGCCCTAGGGTCAAAACCATTGACCGCAGCGGAGGCGGCGACGGCAGCGG
CGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig14:2007368..2011871+

>mRNA_S-ischiensis_contig14.3338.1 ID=mRNA_S-ischiensis_contig14.3338.1|Name=mRNA_S-ischiensis_contig14.3338.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=972bp|location=Sequence derived from alignment at S-ischiensis_contig14:2007368..2011871+ (Schizocladia ischiensis KU_0333)
ATGAGGGGAGGGGATGGACGCCTCCACACCATGAGCACGATGAGGGGAGG
GGATGGACGCCTCCACACCATGAGCACGCTGCTGAGGCAAAGCGTGGCAC
AGATGGAGATAGAGATCATTCTGGGCGATGTGGTGGAGTGCGCCTGGGGC
CTGATCACCCAGAGGCAGAAGGCAGCGCTGCTGCTGAGGCAAAGCGTGGC
ACAGATGGAGATAGAGATCATTCTGGGCGATGTGGTGGAGTGCGCCTGGG
GCCTGATCACCCAGAGGCAGAAGGCAGCGCTGGAAGAAGCGCGCCGGGCC
AGCCTCCTGGGCGATGACGACGATGACGGCATGTCACAGTCCCGTGCCTC
CCGCCACTCCCTCGACAACAGCGAGCTTCGCCTTGCGTCCTCCTCCTCTG
AGGGCGGCCTCCACGACGACCCCGACGAGGACCTGGAGCTCTCCTCTTCC
TCTCGCCAGGAAGAAGCGCGCCGGGCCAGCCTCCTGGGCGATGACGACGA
TGACGGCATGTCACAGTCCCGTGCCTCCCGCCACTCCCTCGACAACAGCG
AGCTTCGCCTTGCGTCCTCCTCCTCTGAGGGCGGCCTCCACGACGACCCC
GACGAGGACCTGGAGCTCTCCTCTTCCTCTCGCCAGGGACACCACCACCC
CCCGGGCCGAGGCAGCCGCCGGGAGGACAGCAAGGAAGAGATTGAGCACG
GCGGTGCTATGGGGGGCGGCGGCGGCCGCGGCCGCGGGAGCATCGCTAGG
CGCCCTAGGGTCAAAACCATTGACCGCAGCGGAGGCGGCGACGGCAGCGG
CGGCGGACACCACCACCCCCCGGGCCGAGGCAGCCGCCGGGAGGACAGCA
AGGAAGAGATTGAGCACGGCGGTGCTATGGGGGGCGGCGGCGGCCGCGGC
CGCGGGAGCATCGCTAGGCGCCCTAGGGTCAAAACCATTGACCGCAGCGG
AGGCGGCGACGGCAGCGGCGGC
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