mRNA_S-ischiensis_contig14.3325.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig14.3325.1
Unique NamemRNA_S-ischiensis_contig14.3325.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig14.3325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig14contigS-ischiensis_contig14:1859337..1861141 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size484
Cds size300
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig14.3325.1prot_S-ischiensis_contig14.3325.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig14 1859337..1860958 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815702.5518034-CDS-S-ischiensis_contig14:1859336..18594691622815702.5518034-CDS-S-ischiensis_contig14:1859336..1859469Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 1859337..1859469 +
1695739862.2673457-CDS-S-ischiensis_contig14:1859336..18594691695739862.2673457-CDS-S-ischiensis_contig14:1859336..1859469Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 1859337..1859469 +
1622815702.566635-CDS-S-ischiensis_contig14:1860791..18609581622815702.566635-CDS-S-ischiensis_contig14:1860791..1860958Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 1860792..1860958 +
1695739862.2779446-CDS-S-ischiensis_contig14:1860791..18609581695739862.2779446-CDS-S-ischiensis_contig14:1860791..1860958Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 1860792..1860958 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815702.5783823-UTR-S-ischiensis_contig14:1860958..18611411622815702.5783823-UTR-S-ischiensis_contig14:1860958..1861141Schizocladia ischiensis KU_0333UTRS-ischiensis_contig14 1860959..1861141 +
1695739862.2864695-UTR-S-ischiensis_contig14:1860958..18611411695739862.2864695-UTR-S-ischiensis_contig14:1860958..1861141Schizocladia ischiensis KU_0333UTRS-ischiensis_contig14 1860959..1861141 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig14.3325.1

>prot_S-ischiensis_contig14.3325.1 ID=prot_S-ischiensis_contig14.3325.1|Name=mRNA_S-ischiensis_contig14.3325.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=100bp
LHFAAEQQPYGESHCGTTATRVSEGCAGRGGGARSFDIARAQSRGHPARA
AGGPPRGPGEGPGGGGIAGPVGATAGRGALEKLRGNQAHTHEVGTRAPF*
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mRNA from alignment at S-ischiensis_contig14:1859337..1861141+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig14.3325.1 ID=mRNA_S-ischiensis_contig14.3325.1|Name=mRNA_S-ischiensis_contig14.3325.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1805bp|location=Sequence derived from alignment at S-ischiensis_contig14:1859337..1861141+ (Schizocladia ischiensis KU_0333)
CTGCATTTCGCTGCAGAGCAGCAGCCATATGGAGAGAGCCATTGTGGAAC
GACTGCTACGCGGGTATCAGAAGGATGTGCAGGAAGAGGTGGAGGAGCGA
GAAGCTTTGATATCGCGCGTGCTCAAAGTCGAGGTGGGTCTGCTCACAAC
GAAGACAAACGTTCGCCCTCCTCAACAACACCGCGCCGCTCAAGAGGACG
GCAGCTGCAAAGGCAACAATGACTTATCATTTCCCGTGCTGACGGCATTC
TTCCTTCAATGGCATCATCACGTAGGAGGACAACCCTGGTTTTCGTATCA
CAACAACGCCAGCTCAAGGAATGGCCAGTATCTACACTTGCGGTCCGACG
CCCAAGCCGCTCCTGCCGCTTCCCTCCGCAAGTGCTTCAAAGCACCTGCT
ACAGTGCAGCAGCAGTAGTACTGCCAAGCAGTGGCTGCCTACCTTCCCAC
CTTGCGTTCGACTCTGGCCGCTCCGCCCGCCTCTGCGCCCCAAGAGTTTG
TGCCAATCATCGGCACACCACAGAGGCGGTGTGCGTTGATGTCCTCCTAA
TCTCTGGATACGCGGCCATCTGCGTTCTTCCTTTGTCCTAGGTGCCCAGT
CTGCTCAAACCCAAGCCACTGTTGGTAGCAGGGACGAGCCGGAACTACTG
CCTACTTCCTTTGTCCTAGGTGCCCAGTCAGCTCAAACCCAAGCCACTGT
GGGTAGCAGGGACGAGCCGGATCGGCCCAACAGCCGCGCCTCCTCCCAGA
GGGCAAACACCTGAAATAATAAGTCCCGAATGTGTACACAAGTAGTTACG
AGTAATGCTCGAGGGGCCGGTTGCCCTGACCATCTGATTATTTTCGGAGG
GCCGGGGACATGAGCCCGCGGGGGCGGCGTGAGTGCTGCCTTTCCCCCCT
GCAGTCTGTTCGGGATGACCACGGTACGGCTCCTTCCGCTCACGTGATGC
TACTAGTACTGTATATGTACTTCGAAGTATACTCGTATATGTACCCACGT
GGTGCTTGCCGTAGTCCCGAGACCATTGACCGCGCGCCTCTGTCGAGACG
GAGCAGGCTGTAAGAGAGTAGACATCACATCACAACACAGAAATCGCACC
CGTGTGAAATTGAGTGCTCCCGCAGAGATTGGTGTGATGTGCTGCGATGT
GATGCGATGTCGAACTACAGTGCATCAGAGCAAACATCATATCACATCAC
ATCACAACAATCGCACCCGTGTGACACTGAGTGTTCCCGCAGAGATTGAG
TGGGGGCAAAACAGGACACGGCAGTCGGCAACAATCGATTTGATAACGGA
TGCATTCAACCCTTTTACCCCTGCTAAATTGGACTCGCACACTGAACCCC
TATTATCATACAGGCCTCAGGGGGTAAAAGGGTTAAGGTCTCAGAAACAT
AACGGGTTGGATACAGTATTCTGAGAAGCAGACGTGTTGCACCCCTGCGG
AACAGGACACCCAGCGCGAGCTGCTGGAGGCCCGCCTCGTGGCCCAGGCG
AGGGCCCGGGAGGCGGAGGAATTGCGGGCCCGGTCGGAGCAACTGCAGGC
AGAGGTGCTCTAGAAAAGCTGCGTGGCAATCAGGCGCACACCCACGAGGT
GGGGACTCGGGCGCCATTCTAGGCAAGGGTCTGGTTTGTCGTCGGGGAGA
TCTCCTCTCGACGGCAAGGACGGCATTTTCGGCCAGTTTGGTGATGGTGC
CTTGCCTTTTTCAGGGGTGCAGTCAATCTCGCCCGGGGATTTGGGCCAAC
CTAGCGGGCCCTGGGCGGGGCGAACATGGCCCAAGACATCCCTTTGAGTT
ACATA
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Coding sequence (CDS) from alignment at S-ischiensis_contig14:1859337..1861141+

>mRNA_S-ischiensis_contig14.3325.1 ID=mRNA_S-ischiensis_contig14.3325.1|Name=mRNA_S-ischiensis_contig14.3325.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=600bp|location=Sequence derived from alignment at S-ischiensis_contig14:1859337..1861141+ (Schizocladia ischiensis KU_0333)
CTGCATTTCGCTGCAGAGCAGCAGCCATATGGAGAGAGCCATTGTGGAAC
GACTGCTACGCGGGTATCAGAAGGATGTGCAGGAAGAGGTGGAGGAGCGA
GAAGCTTTGATATCGCGCGTGCTCAAAGTCGAGCTGCATTTCGCTGCAGA
GCAGCAGCCATATGGAGAGAGCCATTGTGGAACGACTGCTACGCGGGTAT
CAGAAGGATGTGCAGGAAGAGGTGGAGGAGCGAGAAGCTTTGATATCGCG
CGTGCTCAAAGTCGAGGACACCCAGCGCGAGCTGCTGGAGGCCCGCCTCG
TGGCCCAGGCGAGGGCCCGGGAGGCGGAGGAATTGCGGGCCCGGTCGGAG
CAACTGCAGGCAGAGGTGCTCTAGAAAAGCTGCGTGGCAATCAGGCGCAC
ACCCACGAGGTGGGGACTCGGGCGCCATTCTAGGACACCCAGCGCGAGCT
GCTGGAGGCCCGCCTCGTGGCCCAGGCGAGGGCCCGGGAGGCGGAGGAAT
TGCGGGCCCGGTCGGAGCAACTGCAGGCAGAGGTGCTCTAGAAAAGCTGC
GTGGCAATCAGGCGCACACCCACGAGGTGGGGACTCGGGCGCCATTCTAG
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