mRNA_S-ischiensis_contig1.178.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.178.1
Unique NamemRNA_S-ischiensis_contig1.178.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:1162027..1162599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size574
Cds size552
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815364.4044116-CDS-S-ischiensis_contig1:1162026..11625781622815364.4044116-CDS-S-ischiensis_contig1:1162026..1162578Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 1162027..1162578 +
1695739661.405167-CDS-S-ischiensis_contig1:1162026..11625781695739661.405167-CDS-S-ischiensis_contig1:1162026..1162578Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 1162027..1162578 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815364.421108-UTR-S-ischiensis_contig1:1162578..11625991622815364.421108-UTR-S-ischiensis_contig1:1162578..1162599Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 1162579..1162599 +
1695739661.4146142-UTR-S-ischiensis_contig1:1162578..11625991695739661.4146142-UTR-S-ischiensis_contig1:1162578..1162599Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 1162579..1162599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.178.1prot_S-ischiensis_contig1.178.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 1162027..1162578 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.178.1

>prot_S-ischiensis_contig1.178.1 ID=prot_S-ischiensis_contig1.178.1|Name=mRNA_S-ischiensis_contig1.178.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=184bp
AAGARTRCTVSSTCTVQENVEYTYNCTRGRRLTDRPVCNGSRGRPSRQTD
TRADGSEWGGAGQSRGCCCCGWRCLCLSAHMHAHTHAHTHTLVHSSSRVF
QHPHCPAPHLPLSPAHAHKHTHNGGSFASLPFYVLAGARAPARRRAQPTP
AFILMLGGPPASHNKLYFSLCLVSRHSCSTQEV*
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mRNA from alignment at S-ischiensis_contig1:1162027..1162599+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.178.1 ID=mRNA_S-ischiensis_contig1.178.1|Name=mRNA_S-ischiensis_contig1.178.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=573bp|location=Sequence derived from alignment at S-ischiensis_contig1:1162027..1162599+ (Schizocladia ischiensis KU_0333)
GCTGCTGGTGCCCGGACACGATGTACAGTAAGTAGTACTTGTACGGTGCA
AGAAAACGTAGAGTATACATACAATTGTACCCGTGGCAGACGCTTGACGG
ACCGGCCCGTGTGTAACGGATCTCGAGGCCGGCCAAGCCGTCAGACGGAC
ACGCGCGCGGACGGCAGCGAATGGGGCGGGGCGGGACAATCACGCGGCTG
CTGCTGCTGCGGCTGGCGCTGCTTGTGCCTCTCTGCGCACATGCACGCAC
ACACGCATGCACACACGCACACGCTCGTGCACTCGTCCAGCCGCGTGTTC
CAACACCCCCATTGTCCCGCCCCGCACCTCCCTCTCTCCCCCGCCCACGC
ACACAAACACACACATAATGGAGGGTCGTTCGCCTCCCTCCCTTTCTACG
TGCTCGCGGGCGCGCGCGCGCCCGCGCGGCGCCGGGCCCAGCCAACACCA
GCTTTCATACTCATGCTCGGCGGTCCGCCAGCCAGTCACAACAAGCTGTA
TTTTAGCCTGTGTCTTGTTTCGAGGCACAGCTGTAGCACACAAGAGGTGT
GAACAAGACAACGGTAGTACACG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:1162027..1162599+

>mRNA_S-ischiensis_contig1.178.1 ID=mRNA_S-ischiensis_contig1.178.1|Name=mRNA_S-ischiensis_contig1.178.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1104bp|location=Sequence derived from alignment at S-ischiensis_contig1:1162027..1162599+ (Schizocladia ischiensis KU_0333)
GCTGCTGGTGCCCGGACACGATGTACAGTAAGTAGTACTTGTACGGTGCA
AGAAAACGTAGAGTATACATACAATTGTACCCGTGGCAGACGCTTGACGG
ACCGGCCCGTGTGTAACGGATCTCGAGGCCGGCCAAGCCGTCAGACGGAC
ACGCGCGCGGACGGCAGCGAATGGGGCGGGGCGGGACAATCACGCGGCTG
CTGCTGCTGCGGCTGGCGCTGCTTGTGCCTCTCTGCGCACATGCACGCAC
ACACGCATGCACACACGCACACGCTCGTGCACTCGTCCAGCCGCGTGTTC
CAACACCCCCATTGTCCCGCCCCGCACCTCCCTCTCTCCCCCGCCCACGC
ACACAAACACACACATAATGGAGGGTCGTTCGCCTCCCTCCCTTTCTACG
TGCTCGCGGGCGCGCGCGCGCCCGCGCGGCGCCGGGCCCAGCCAACACCA
GCTTTCATACTCATGCTCGGCGGTCCGCCAGCCAGTCACAACAAGCTGTA
TTTTAGCCTGTGTCTTGTTTCGAGGCACAGCTGTAGCACACAAGAGGTGT
GAGCTGCTGGTGCCCGGACACGATGTACAGTAAGTAGTACTTGTACGGTG
CAAGAAAACGTAGAGTATACATACAATTGTACCCGTGGCAGACGCTTGAC
GGACCGGCCCGTGTGTAACGGATCTCGAGGCCGGCCAAGCCGTCAGACGG
ACACGCGCGCGGACGGCAGCGAATGGGGCGGGGCGGGACAATCACGCGGC
TGCTGCTGCTGCGGCTGGCGCTGCTTGTGCCTCTCTGCGCACATGCACGC
ACACACGCATGCACACACGCACACGCTCGTGCACTCGTCCAGCCGCGTGT
TCCAACACCCCCATTGTCCCGCCCCGCACCTCCCTCTCTCCCCCGCCCAC
GCACACAAACACACACATAATGGAGGGTCGTTCGCCTCCCTCCCTTTCTA
CGTGCTCGCGGGCGCGCGCGCGCCCGCGCGGCGCCGGGCCCAGCCAACAC
CAGCTTTCATACTCATGCTCGGCGGTCCGCCAGCCAGTCACAACAAGCTG
TATTTTAGCCTGTGTCTTGTTTCGAGGCACAGCTGTAGCACACAAGAGGT
GTGA
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