mRNA_S-ischiensis_contig1.121.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.121.1
Unique NamemRNA_S-ischiensis_contig1.121.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:800015..800626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-10_002740.1
Exons1
Model size612
Cds size507
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815363.8977747-UTR-S-ischiensis_contig1:800014..8001191622815363.8977747-UTR-S-ischiensis_contig1:800014..800119Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 800015..800119 +
1695739661.2331693-UTR-S-ischiensis_contig1:800014..8001191695739661.2331693-UTR-S-ischiensis_contig1:800014..800119Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 800015..800119 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815363.9086607-CDS-S-ischiensis_contig1:800119..8006261622815363.9086607-CDS-S-ischiensis_contig1:800119..800626Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 800120..800626 +
1695739661.244457-CDS-S-ischiensis_contig1:800119..8006261695739661.244457-CDS-S-ischiensis_contig1:800119..800626Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 800120..800626 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.121.1prot_S-ischiensis_contig1.121.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 800120..800626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.121.1

>prot_S-ischiensis_contig1.121.1 ID=prot_S-ischiensis_contig1.121.1|Name=mRNA_S-ischiensis_contig1.121.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=169bp
MSQHGAMLRLLHETFLNEGHVPLKDIGAEDFLPSDQGVFSTLSYRSGESV
VSIRALVLFDNLIVHASTGEGIVHRLSFNMAEFYDAGAQPSAERVAQFEA
RVRSGLLLRLEPPLGEFADLFGVDTDLLHRALTFLDAKSLLEFGVASCAA
AKNASENLLWQPLLEADFP
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mRNA from alignment at S-ischiensis_contig1:800015..800626+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.121.1 ID=mRNA_S-ischiensis_contig1.121.1|Name=mRNA_S-ischiensis_contig1.121.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=612bp|location=Sequence derived from alignment at S-ischiensis_contig1:800015..800626+ (Schizocladia ischiensis KU_0333)
GCACCACGGTCGCTCGACGGCAGGCTCGATTGACCTGCAAAGCGAGCGGG
CGGATCGAAATTAAATTTCGGAGCTTGTAGGCGCCAGGGTGCCCAGTGTC
GCAGCATGTCGCAGCATGGCGCAATGCTGCGACTGCTTCACGAGACTTTC
CTGAACGAAGGCCATGTCCCGCTCAAGGACATTGGGGCGGAGGACTTCTT
GCCCTCTGACCAGGGTGTGTTTTCGACGCTCAGCTACAGGTCGGGGGAGA
GTGTAGTGTCGATTCGTGCCTTGGTGTTGTTTGACAACCTGATCGTCCAT
GCCAGCACCGGCGAGGGCATCGTGCACCGCCTGTCCTTCAATATGGCCGA
GTTCTACGACGCGGGGGCGCAGCCCTCCGCCGAACGGGTCGCACAGTTCG
AGGCCCGTGTCCGGTCCGGCCTGCTCCTGCGCTTGGAGCCCCCTCTGGGG
GAGTTCGCAGACCTGTTTGGCGTGGACACGGACCTGCTTCACCGCGCCCT
TACCTTCCTGGACGCCAAATCTCTGCTGGAGTTTGGCGTGGCTAGCTGCG
CTGCCGCCAAGAACGCCTCCGAGAACTTGCTCTGGCAACCCCTCCTTGAA
GCTGACTTTCCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:800015..800626+

>mRNA_S-ischiensis_contig1.121.1 ID=mRNA_S-ischiensis_contig1.121.1|Name=mRNA_S-ischiensis_contig1.121.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1014bp|location=Sequence derived from alignment at S-ischiensis_contig1:800015..800626+ (Schizocladia ischiensis KU_0333)
ATGTCGCAGCATGGCGCAATGCTGCGACTGCTTCACGAGACTTTCCTGAA
CGAAGGCCATGTCCCGCTCAAGGACATTGGGGCGGAGGACTTCTTGCCCT
CTGACCAGGGTGTGTTTTCGACGCTCAGCTACAGGTCGGGGGAGAGTGTA
GTGTCGATTCGTGCCTTGGTGTTGTTTGACAACCTGATCGTCCATGCCAG
CACCGGCGAGGGCATCGTGCACCGCCTGTCCTTCAATATGGCCGAGTTCT
ACGACGCGGGGGCGCAGCCCTCCGCCGAACGGGTCGCACAGTTCGAGGCC
CGTGTCCGGTCCGGCCTGCTCCTGCGCTTGGAGCCCCCTCTGGGGGAGTT
CGCAGACCTGTTTGGCGTGGACACGGACCTGCTTCACCGCGCCCTTACCT
TCCTGGACGCCAAATCTCTGCTGGAGTTTGGCGTGGCTAGCTGCGCTGCC
GCCAAGAACGCCTCCGAGAACTTGCTCTGGCAACCCCTCCTTGAAGCTGA
CTTTCCGATGTCGCAGCATGGCGCAATGCTGCGACTGCTTCACGAGACTT
TCCTGAACGAAGGCCATGTCCCGCTCAAGGACATTGGGGCGGAGGACTTC
TTGCCCTCTGACCAGGGTGTGTTTTCGACGCTCAGCTACAGGTCGGGGGA
GAGTGTAGTGTCGATTCGTGCCTTGGTGTTGTTTGACAACCTGATCGTCC
ATGCCAGCACCGGCGAGGGCATCGTGCACCGCCTGTCCTTCAATATGGCC
GAGTTCTACGACGCGGGGGCGCAGCCCTCCGCCGAACGGGTCGCACAGTT
CGAGGCCCGTGTCCGGTCCGGCCTGCTCCTGCGCTTGGAGCCCCCTCTGG
GGGAGTTCGCAGACCTGTTTGGCGTGGACACGGACCTGCTTCACCGCGCC
CTTACCTTCCTGGACGCCAAATCTCTGCTGGAGTTTGGCGTGGCTAGCTG
CGCTGCCGCCAAGAACGCCTCCGAGAACTTGCTCTGGCAACCCCTCCTTG
AAGCTGACTTTCCG
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