mRNA_S-ischiensis_contig12.2714.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2714.1
Unique NamemRNA_S-ischiensis_contig12.2714.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:2493672..2493998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size329
Cds size327
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.456726-CDS-S-ischiensis_contig12:2493671..24939981622815639.456726-CDS-S-ischiensis_contig12:2493671..2493998Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2493672..2493998 +
1695739820.2219138-CDS-S-ischiensis_contig12:2493671..24939981695739820.2219138-CDS-S-ischiensis_contig12:2493671..2493998Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2493672..2493998 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2714.1prot_S-ischiensis_contig12.2714.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 2493672..2493998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2714.1

>prot_S-ischiensis_contig12.2714.1 ID=prot_S-ischiensis_contig12.2714.1|Name=mRNA_S-ischiensis_contig12.2714.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=109bp
MSQAAALHQLTVSDGVNQHTARWHGFCPVSAQKIGGTTVPPDSRRDLPLL
SARYTITDMSLQTGAAAPRGTRGCPHPRVPTRKPTPSCRESPGLAMVPSS
SPPPPLPVP
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mRNA from alignment at S-ischiensis_contig12:2493672..2493998+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2714.1 ID=mRNA_S-ischiensis_contig12.2714.1|Name=mRNA_S-ischiensis_contig12.2714.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=327bp|location=Sequence derived from alignment at S-ischiensis_contig12:2493672..2493998+ (Schizocladia ischiensis KU_0333)
ATGTCCCAAGCCGCTGCCCTGCACCAGCTTACTGTCTCGGACGGCGTGAA
CCAGCACACCGCGCGCTGGCATGGTTTCTGCCCAGTATCGGCCCAAAAAA
TTGGCGGCACCACAGTTCCACCCGACAGCAGACGCGACCTCCCGTTGCTA
AGCGCCAGGTATACGATAACAGACATGTCGCTGCAGACTGGCGCGGCGGC
CCCCCGGGGCACGCGGGGATGCCCGCACCCAAGGGTACCAACCCGAAAGC
CGACACCTTCGTGCCGGGAGAGCCCTGGGCTGGCAATGGTGCCCTCTTCA
TCTCCTCCTCCTCCCCTGCCTGTTCCT
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Coding sequence (CDS) from alignment at S-ischiensis_contig12:2493672..2493998+

>mRNA_S-ischiensis_contig12.2714.1 ID=mRNA_S-ischiensis_contig12.2714.1|Name=mRNA_S-ischiensis_contig12.2714.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=654bp|location=Sequence derived from alignment at S-ischiensis_contig12:2493672..2493998+ (Schizocladia ischiensis KU_0333)
ATGTCCCAAGCCGCTGCCCTGCACCAGCTTACTGTCTCGGACGGCGTGAA
CCAGCACACCGCGCGCTGGCATGGTTTCTGCCCAGTATCGGCCCAAAAAA
TTGGCGGCACCACAGTTCCACCCGACAGCAGACGCGACCTCCCGTTGCTA
AGCGCCAGGTATACGATAACAGACATGTCGCTGCAGACTGGCGCGGCGGC
CCCCCGGGGCACGCGGGGATGCCCGCACCCAAGGGTACCAACCCGAAAGC
CGACACCTTCGTGCCGGGAGAGCCCTGGGCTGGCAATGGTGCCCTCTTCA
TCTCCTCCTCCTCCCCTGCCTGTTCCTATGTCCCAAGCCGCTGCCCTGCA
CCAGCTTACTGTCTCGGACGGCGTGAACCAGCACACCGCGCGCTGGCATG
GTTTCTGCCCAGTATCGGCCCAAAAAATTGGCGGCACCACAGTTCCACCC
GACAGCAGACGCGACCTCCCGTTGCTAAGCGCCAGGTATACGATAACAGA
CATGTCGCTGCAGACTGGCGCGGCGGCCCCCCGGGGCACGCGGGGATGCC
CGCACCCAAGGGTACCAACCCGAAAGCCGACACCTTCGTGCCGGGAGAGC
CCTGGGCTGGCAATGGTGCCCTCTTCATCTCCTCCTCCTCCCCTGCCTGT
TCCT
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