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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 652 |
| Cds size | 597 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815631.731601-UTR-S-ischiensis_contig12:193019..193063 | 1622815631.731601-UTR-S-ischiensis_contig12:193019..193063 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig12 193020..193063 - |
| 1695739816.0815403-UTR-S-ischiensis_contig12:193019..193063 | 1695739816.0815403-UTR-S-ischiensis_contig12:193019..193063 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig12 193020..193063 - |
| 1622815631.8016262-UTR-S-ischiensis_contig12:199111..199122 | 1622815631.8016262-UTR-S-ischiensis_contig12:199111..199122 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig12 199112..199122 - |
| 1695739816.1560607-UTR-S-ischiensis_contig12:199111..199122 | 1695739816.1560607-UTR-S-ischiensis_contig12:199111..199122 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig12 199112..199122 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815631.7423162-CDS-S-ischiensis_contig12:193063..193168 | 1622815631.7423162-CDS-S-ischiensis_contig12:193063..193168 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig12 193064..193168 - |
| 1695739816.0920866-CDS-S-ischiensis_contig12:193063..193168 | 1695739816.0920866-CDS-S-ischiensis_contig12:193063..193168 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig12 193064..193168 - |
| 1622815631.7537153-CDS-S-ischiensis_contig12:193565..193758 | 1622815631.7537153-CDS-S-ischiensis_contig12:193565..193758 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig12 193566..193758 - |
| 1695739816.1043372-CDS-S-ischiensis_contig12:193565..193758 | 1695739816.1043372-CDS-S-ischiensis_contig12:193565..193758 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig12 193566..193758 - |
| 1622815631.7646785-CDS-S-ischiensis_contig12:194597..194744 | 1622815631.7646785-CDS-S-ischiensis_contig12:194597..194744 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig12 194598..194744 - |
| 1695739816.1216993-CDS-S-ischiensis_contig12:194597..194744 | 1695739816.1216993-CDS-S-ischiensis_contig12:194597..194744 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig12 194598..194744 - |
| 1622815631.7750049-CDS-S-ischiensis_contig12:197684..197779 | 1622815631.7750049-CDS-S-ischiensis_contig12:197684..197779 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig12 197685..197779 - |
| 1695739816.131094-CDS-S-ischiensis_contig12:197684..197779 | 1695739816.131094-CDS-S-ischiensis_contig12:197684..197779 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig12 197685..197779 - |
| 1622815631.7852488-CDS-S-ischiensis_contig12:199054..199111 | 1622815631.7852488-CDS-S-ischiensis_contig12:199054..199111 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig12 199055..199111 - |
| 1695739816.140475-CDS-S-ischiensis_contig12:199054..199111 | 1695739816.140475-CDS-S-ischiensis_contig12:199054..199111 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig12 199055..199111 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig12.2527.1 >prot_S-ischiensis_contig12.2527.1 ID=prot_S-ischiensis_contig12.2527.1|Name=mRNA_S-ischiensis_contig12.2527.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=199bp
MAAAFDTAVVADLPEFAAQAAAARAAWAAAVQAAEEEGYLLEEGDTLGAI
SGRSPRPSYVEEGGEEEDADLPKLIGARTWGLRRGAAAGDGEPAPPVHIR
CVLAARRPSPIVVYTATSARPRYGGSLPATPTASTSAASSRRTSPRGSAY
GSGNWPQQSPGPVQAQSGATPRNGGPGAAVPESGRSLGRVSPATLQDS* back to topmRNA from alignment at S-ischiensis_contig12:193020..199122- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig12.2527.1 ID=mRNA_S-ischiensis_contig12.2527.1|Name=mRNA_S-ischiensis_contig12.2527.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=6103bp|location=Sequence derived from alignment at S-ischiensis_contig12:193020..199122- (Schizocladia ischiensis KU_0333)
CAGCGGCGGCGATGGCGGCCGCGTTTGATACTGCGGTGGTGGCGGACCTG
CCGGAGTTTGCGGCGCAGGTGAGTGATGTGATGCGAAATGATGTGATGTG
ATGTAATGTGATGTGCACTCTAAAGTGCTGTAGTTTGGCATCACATCGCG
ATGGCGGCCGCATTTGATATGGTGGTGGTGGCCGCCTTGCCGGAGTTCGC
TGCGCAGGTGACTATGGTAGCTACTGGGACCTTTGGAAACGAAGTCTCCT
AGTACTAGTAGTCCTTGCACCTTGGAAACAAGTCTCGTAAGTAAGTACTT
GGGTTCTCTGAAAACTACAGTAGGTGGTAGTGGTTAGTTCCTTTGGCCTT
TACAAGAAACAATCGAGTATGCTCTTTCCCAGCGTTTTGTTCGACTCACC
GAACGATTGGCCGCTTCATCTGAAGGTGTCACGCCAGAACCTTGTACCCC
AGCCTTCAGAACAAGCCTCAAGTTGGAAGGTCAGCACGTTGAGGTTGAAG
GTTTTTCAGAACTTACCCGTGGCCCCGACTGTAGTTCTGAGTTTGATACG
CCGATGGTGGCGGACTTGCCGGAGTTAGCTGCGCAGGTACTTCACCCCTT
TACCCCTGGGGTCCGTATAATCATAGGGTTTTAGTGTGTATGTTCAATTT
GGCAGGGGTAAACGGGTTAAGTGCCGGGGCGGGGTGGGGCAAGGTGTTTT
GGGTGAGTGCGTGCACACTATCGTACGCAGTACCATGCAAGTGTGTACTA
ATTGGCTTACAGTATATATACGAATATGTGCTCAAGTTGTGCTTGCCGGT
CCCAAGACCATTGACCACGCGCCTCGTGCGAGACGGAGCAGTACTAGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCTTAGCTCTTGCGACACAA
GAGTTACCCGTGCGTGCTTGATCGACCACACAAAGTCAAAACTTGGGGTT
TGCCCTCCCGCTGGAGCGAGCAGCTCATTTAGCCATTGACTCTCAACCAC
TTCGAAGTATACTATGGACACGCAGTACCTAGTCAAACCATTTGAGCACT
ACTAACTATGCTATATAGTTAGGTCAAAACTTGGGGAACTGCCCTCCTGC
CAGAGTACTGTAGCTTATTTAGCCACTGACTCGCGTCCCAACTAGGTAGG
CCGGGACGGAGCCCGCCGGGCTCGCACTGGCCAGGCCACATGTTGCGTGG
CTCGATGTCGGGGGTCTGGCCGCGACGTGTGTTTCGATGCGCGCTGTGTT
GTACTGTAGGTTCCTTTATTTACCGCCTGCTTGACGGCGCATAAGGAGAA
AACCCACGGATATTTTCGCCCCACGCACGTGTGTGTGCGGCAGGCGGCAG
CGGCGCGGGCGGCGTGGGCGGCGGCGGTGCAGGCGGCCGAGGAGGAGGGT
TATTTGTTGGAAGAGGGAGACACCCTGGGAGCCATCAGGTGAGCTACATG
CTATGTAGTAGATCAGACCTTGGGGTACTTCCAAGTGGAAACGAGGAGGT
GTTCCTACTTATGCGAGTTCAGGGCCCCCTGCCCCGGAAGCCCGTCTTTT
CACTCGCCTTCACTCGCAGGGCACATAGAGCAGAAAAACAAAGAAAAACA
AAGAAAACAAAGGAGGGAGAGGGCGAGAAGGAACAACAGCGGAGGAGCCT
CTCTTGTGCCATAAGTAGTTAGGCAAACGACATAGTGAGCTGTACTGTAC
GAGTACTGTACGGGTGCTGTACATGCTAGTGTCCTGTGTACGGGTACTGT
GGTGTGATGTGGTGTGATGTGATGTGATGCGATGTGATGTGATGTGGTCT
GATGTGATGTGTGTGGTGTGATGTGGTGTGGTGTGATGTGATGTGATGTG
ATGCGATGTGATGTGATGCGATGTGATGTGATGTGGTGTGATGTGATGTG
GTGCGATGTGATGTGATGTGGTGTGGTATGACGTGGTGTGATGCGATGTG
ATGTGATGTGATGCGATGTCATGTGATGTGGTGTGATGTGATGTGTGGTG
ACGTGCACTCCGTGCACTTATGCGCACTGCGGTTGGACAAGTGTGTTTTG
AGGTCACATCACTTCAACCAAATAACGTCACATTGATATTCGACATCGAG
TAGTGCCGTTTGACATGTGTGTTTGAGCTCACATCGTGTGAACATTGATA
TTCGATACTTCCAAGTATTTGATATTTGGTATTTGATATTGAGCTCTCCG
CCACATACGGCAGCCCCACCGTCAGCAGGGCTAACTTTGCTCTAGCCCGG
CCCCTACCGTAATCGTCGGAGAGATCTTGCCCTCCCATGCCAAACTTCGC
AAGGGCATTCTCGCCGCATACTGGTCGGATTCGCATGGGAAAACTCAGGA
ACATTCCCTCAGGATGTGGAGGACTTACTGTAGTCCGACGGATTTCAGAA
CAATTCGGAACCTACCCCGCGAGAAATTGTCTGCCAATCAATTTTAAATT
GTCCCGGGGGGGCAAGATATCTCCGACGATTACAGCAAAACATAAACCTA
CCGTAACAACACTATCATCATCAGCGGGAGGAGCCTGAGGCCCAGCTACG
TGCAGGAGGGCGGGGAGGAGGAGGATAGCGTGCAATCTCACACACGTGCG
ATTGTACTTCGTTACAATTTATATGAATCACTACTGTAGTTACAATTTAC
TTCCAAGTATATGAATCACTACTAGTAGATACAATTTGCATGAATCACTA
CCGTAGCACTGCCCATCGTCAGCGGGAGGAGCCCGAGGCCCAGCTATGTG
GAGGAGGGCGGGGAGGAGGAGGATGCCTATACTTAAATGGGATATATATA
TGGGATAGCCACTAATACGACAACACTCAATCTCACACACGTGCTATTGT
ACCTCGGTACGATTGATACGAATCACTACAGTAGGTGCAATTGATATGAA
TCACTAGTTACAATTTATATGAATCGCTACAGTAACGCTGCCCACCGTCA
GCGGGAGGAGCCCGAGGCCCAGCTATGTTGAGGAGGGCGGGGAGAAGGAG
GATGACGATTCTTACGTGGGATATTCTTAAATGGGATACACAAAGGGGAT
AGCCACTAATACGAGAACACTCAATCTCGCACACGTGCTATTGTACTCGA
GTACCTCGTTACAACTTATATTGATTACCACCTACCGCAACGCTGTCCAC
CATCAGCGGGAGGAGCCCCAGGCCCAGCTACGTGGAGGAGCGCGGGAAGG
AGGAGGATTCTTACATCGGATAACCACTACCGTACTAGTAGACGAGAACG
CTCAATCTCACAACACACGTCCGATTGTACGGAGTGCCTCGTTACGATTG
ATACACATCACTACAGTAGTTACAATTGATATGAATCACTAGTTACAATT
TATATGAATCACTACCACAACGCTGCCCACCGTCAGCGGGAGGAGCCCGT
GGCCCAGCAACGTAAGTTAGAGGCAATTAGGGGTAGTTAGACCTGAAATG
GAGGCTAGTTAGGCCCTAATTAACCCCTCAACCCTAAAACCTACCGTACC
ACTGCCCACCATCAGCGGGGGGAGCACAAGGCCCAGCTACGTGGAGGATG
GCGGGGAGGAGGAGGATGCGGACCTGCCCAAACTCATCATTTATCGACAG
TACTGATCTATATATTTTTCGATAGTCGATATTCGATAGTTTGACCCACA
CTGAATGCAAGCAGTTTGTAACGCCACCCACAAAGTCAGTGGAGTCCGAT
AGCTATGTACTGATCGATATTCCATCACTGCCTGCCATCAGCGGGAGGAG
CCCGAGGCCCAGCTACGTGGAGGAGGGCGGGGAGGAGGAGGATTCTTAAA
TGGGATAACCATTAGTACAGTAATACGAGAACACTCAATTTCACACACGT
GCGATTGTACCTCGTTACAACTTAAATGAATCACCGTCAACACCACCACC
ACCACTATCACCACCACCACCACCACCACCACCACCACAACCACCACCAC
CACCACCACCACCACCACCACCACCACCACCACCATCAGCGGGAGGAACC
CGAGGCCCAGCTACGTGGAGGAGGGAACGTATTATTTACAGTGCTGATCT
ATGGTATGAATCTATCGATAGTCGATAGTTGATTAATTTGACCCACACAA
AACCCAAGTTAGATATGAAACAACACGGGGTGAGGTGCGGGCCATGTCAC
TAGAGACCTCAGCAGTGGCCCTTCCTTAGCTCGCCAGGTAGTTAGTAGTG
CCCCTAAGCCCTTTCTTCGTTGATGTGATAGTCACTACTATAATAACATT
CAATTCTTAAATGAATCAACTGACATTACGAGAGCAGTCAATCGCACACA
TGTGCGATACTACCTCGTTACAATTTATATGAATCACACGCCCCTAAACC
CTAGACCTACCGGAACGCCCACCGTCAGTGGGAGGAGCCCGAGGCCCAGC
TACGTGGAGGAGGGCGGGGAGGAGGAGGATGCCGACCTGCCCAAGCTCAT
CGGGGCTCGCACGTGGGGGCTGAGGAGGGGCGCGGCGGCGGGGGACGGGG
AGCCGGCGCCGCCAGTTCACATCAGGTTAGGGTGCAGATTCTATAGGATT
TTGCAAGGCTTTACACAGAGCCGGCCACGGCTCGGGTCACAAGAGCCGGG
CCAGAGCCGGGCCAGAGCCGGGTCGGGTTTTTCCGGACCCGAAAGCCCGG
TACTGGCCCGGCCCGTGGTGTTTTTGAGGCTCTGTGTAAAGCGTTGGGAT
TTTGCTGCAAGGGTTGCATTGCCCCTGCATTGCCCTTGTCTGTGCTTCTT
TGCTAATTTTTGTGCCCCGCGGGTGAAAGCAGGGCTTCTGTCGAGGTCCC
CACCTTAGCTTGTTGGGACGGGGCCCGGAACTCGCATACCGTCACAATAG
AGCTCTAATTCAACAAGGGTTGGGGAGTGCAGGGGGTTAGGGTTGCATCG
GGGACGGGAGGCGATGTGATGTGATATCAAGACTACTGTTGTGATGCGGT
AAGGAAGGGCCACTGTTGAGGTCTTTGGCGACGTGGCCTGCGCCTCGCCA
TGGGTTGTTCCTGCTAGTACTGTTGTGATGTGTGATGTATGATGCATACA
CTACAAGTATTCAATCATCCCGTGCTCAAAGACCCAAGGCTACAGCCCTG
ACTGCGTTTCTGATCCCGATCCCGAACCCTGCGTCCCCCCCCACCCCCCC
ACGCCCCCCCCCATGGGTAGCCACCAATACGAGAACACTCAATCTCACAC
ACGTGTGATTGTAGCTCGTTACAGTTTTTGCACGCAGACAAACAAGCGAG
TGGGAAAGAAGAGGTGTTCCTACGTACACGAGTTCTGGGCCCCCCACTCC
CGGAAACCCGTGTTTATATGAAGCACCGCCCCGCCCCGCCCGTGCCCGCG
GCTCTCGCTGCCAGATGCGTACTGGCTGCCCGGCGCCCCTCCCCCATCGT
CGTCTACACGGCCACTTCGGCGCGGCCCCGGTACGGCGGAAGTTTGCCGG
CCACCCCAACAGCATCTACGTCGGCCGCTTCCAGTCGCCGCACTTCCCCT
AGGGGCTCTGCCTATGGCTCCGGCAACTGGCCGCAGCAGAGCCCCGGGCC
CGTCCAGGTTCGTGTGTCCACCTGTGTTTTTTCACCAGAAAAGTACTTAT
TTGAGTGGTAGATAAGCGGCGAGTTCCAGGCCCCGTGCCAAAATGCTCGT
CCCAAGACAGGACTCAACAGAAGCCCTTCCTTCCCTCGCAGGGCAAGAAG
AAAACAAAAACCAAGAAGGAAAGGGGCGGGGAAGGGGACTCTCTTGTGCT
CACAGTGGGGCAAGCGGGTCCACCTTATGTACGTCAAGGGAGAATGGCTT
TAGGCGGCCCCGCCGGGGGACCGGCAGGCCCAGCCGAGGCTGGTTGGAGT
CTAAGACTGGTTGGAATTCCTCTGGTACAGGATGAACAGGATAACAGCAA
TACAGGGCGAGGTGTGGGCCACGGCATAAAGACCTTAGTATACCCCCCGG
TCAGGCGCAGAGCGGGGCGACACCGCGAAACGGCGGCCCGGGTGCGGCTG
TGCCTGAGAGTGGGAGGAGCCTGGGGAGGGTCTCCCCGGCCACACTTCAA
GACTCCTGAGGGGCCTGGCCCGGGGGGGGCCTCCACTGGTGGCAGCGGCG
GTG back to topCoding sequence (CDS) from alignment at S-ischiensis_contig12:193020..199122- >mRNA_S-ischiensis_contig12.2527.1 ID=mRNA_S-ischiensis_contig12.2527.1|Name=mRNA_S-ischiensis_contig12.2527.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1194bp|location=Sequence derived from alignment at S-ischiensis_contig12:193020..199122- (Schizocladia ischiensis KU_0333)
ATGGCGGCCGCGTTTGATACTGCGGTGGTGGCGGACCTGCCGGAGTTTGC
GGCGCAGATGGCGGCCGCGTTTGATACTGCGGTGGTGGCGGACCTGCCGG
AGTTTGCGGCGCAGGCGGCAGCGGCGCGGGCGGCGTGGGCGGCGGCGGTG
CAGGCGGCCGAGGAGGAGGGTTATTTGTTGGAAGAGGGAGACACCCTGGG
AGCCATCAGGCGGCAGCGGCGCGGGCGGCGTGGGCGGCGGCGGTGCAGGC
GGCCGAGGAGGAGGGTTATTTGTTGGAAGAGGGAGACACCCTGGGAGCCA
TCAGTGGGAGGAGCCCGAGGCCCAGCTACGTGGAGGAGGGCGGGGAGGAG
GAGGATGCCGACCTGCCCAAGCTCATCGGGGCTCGCACGTGGGGGCTGAG
GAGGGGCGCGGCGGCGGGGGACGGGGAGCCGGCGCCGCCAGTTCACATCA
GTGGGAGGAGCCCGAGGCCCAGCTACGTGGAGGAGGGCGGGGAGGAGGAG
GATGCCGACCTGCCCAAGCTCATCGGGGCTCGCACGTGGGGGCTGAGGAG
GGGCGCGGCGGCGGGGGACGGGGAGCCGGCGCCGCCAGTTCACATCAGAT
GCGTACTGGCTGCCCGGCGCCCCTCCCCCATCGTCGTCTACACGGCCACT
TCGGCGCGGCCCCGGTACGGCGGAAGTTTGCCGGCCACCCCAACAGCATC
TACGTCGGCCGCTTCCAGTCGCCGCACTTCCCCTAGGGGCTCTGCCTATG
GCTCCGGCAACTGGCCGCAGCAGAGCCCCGGGCCCGTCCAGATGCGTACT
GGCTGCCCGGCGCCCCTCCCCCATCGTCGTCTACACGGCCACTTCGGCGC
GGCCCCGGTACGGCGGAAGTTTGCCGGCCACCCCAACAGCATCTACGTCG
GCCGCTTCCAGTCGCCGCACTTCCCCTAGGGGCTCTGCCTATGGCTCCGG
CAACTGGCCGCAGCAGAGCCCCGGGCCCGTCCAGGCGCAGAGCGGGGCGA
CACCGCGAAACGGCGGCCCGGGTGCGGCTGTGCCTGAGAGTGGGAGGAGC
CTGGGGAGGGTCTCCCCGGCCACACTTCAAGACTCCTGAGCGCAGAGCGG
GGCGACACCGCGAAACGGCGGCCCGGGTGCGGCTGTGCCTGAGAGTGGGA
GGAGCCTGGGGAGGGTCTCCCCGGCCACACTTCAAGACTCCTGA back to top
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