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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 555 |
| Cds size | 504 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815631.569352-UTR-S-ischiensis_contig12:72803..72848 | 1622815631.569352-UTR-S-ischiensis_contig12:72803..72848 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig12 72804..72848 + |
| 1695739815.9610062-UTR-S-ischiensis_contig12:72803..72848 | 1695739815.9610062-UTR-S-ischiensis_contig12:72803..72848 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig12 72804..72848 + |
| 1622815631.6113722-UTR-S-ischiensis_contig12:75771..75777 | 1622815631.6113722-UTR-S-ischiensis_contig12:75771..75777 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig12 75772..75777 + |
| 1695739816.0147061-UTR-S-ischiensis_contig12:75771..75777 | 1695739816.0147061-UTR-S-ischiensis_contig12:75771..75777 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig12 75772..75777 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815631.5793018-CDS-S-ischiensis_contig12:72848..72866 | 1622815631.5793018-CDS-S-ischiensis_contig12:72848..72866 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig12 72849..72866 + |
| 1695739815.9721012-CDS-S-ischiensis_contig12:72848..72866 | 1695739815.9721012-CDS-S-ischiensis_contig12:72848..72866 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig12 72849..72866 + |
| 1622815631.5900464-CDS-S-ischiensis_contig12:74150..74240 | 1622815631.5900464-CDS-S-ischiensis_contig12:74150..74240 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig12 74151..74240 + |
| 1695739815.9833696-CDS-S-ischiensis_contig12:74150..74240 | 1695739815.9833696-CDS-S-ischiensis_contig12:74150..74240 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig12 74151..74240 + |
| 1622815631.6002252-CDS-S-ischiensis_contig12:75375..75771 | 1622815631.6002252-CDS-S-ischiensis_contig12:75375..75771 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig12 75376..75771 + |
| 1695739815.9958892-CDS-S-ischiensis_contig12:75375..75771 | 1695739815.9958892-CDS-S-ischiensis_contig12:75375..75771 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig12 75376..75771 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig12.2515.1 >prot_S-ischiensis_contig12.2515.1 ID=prot_S-ischiensis_contig12.2515.1|Name=mRNA_S-ischiensis_contig12.2515.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=168bp
MHFLTQGLLAVNKTMQHQSRVMALQGDLIAGRGDRQVLLRELDAIRPPVT
EQVSAGTPVPSVGTQAEAGGGTPPPPLGSGEPVSDSETPAMNGKPLTGGG
DIEAVDAAPAAAAPAAVTAAAAGGATAPEEREKEEEEKWHEAVAVAGPVG
EDAAAAADPEPREVPGL* back to topmRNA from alignment at S-ischiensis_contig12:72804..75777+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig12.2515.1 ID=mRNA_S-ischiensis_contig12.2515.1|Name=mRNA_S-ischiensis_contig12.2515.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2974bp|location=Sequence derived from alignment at S-ischiensis_contig12:72804..75777+ (Schizocladia ischiensis KU_0333)
TACCTGGGGCGGGCGAGCACGGCGTTCGAGGCTCTCACGGCCAACATGCA
TTTCCTTACACAGGTGAGGTGAAGTGGTTTGGAATGGTACTGTAGATGGG
GAACGTGAGTACATATATATGTATTATATATATACTGTAGATGGGGCGCT
TACGGCCAACATGCATTTCCTCACACAGGTGAGGTGAAGTGCTTGGAATG
GTACTGTAGATGGGACGCTGTACGTGTAAAGTTGCACAGACCCTGTTTGC
ACGGCCAACATGCATTTCGTCATGCAGGTGAAGTGGTTTGGAATGGTACT
GTAGATGGGATCTGCTCTGTCTCGACTGAGGCGCGCGGTCAATGGTCTCG
GGACTATGGCAACCACAGCGTGAGCACTCGAGTACATATATATATATACT
GTAGAGGGGATGCTGTGCAGGTACATTGCACAGGCCCTGTGTGAGTGCTC
GGACGCGCTCGGAAGTGTGTGCGCAACAGGCGTTTGCGGTAAGCTAGACC
TTAGAGACGGGAGGAGTTCATGGCAGTGCGCGGAGCACTAACCCCTGCTG
TAGAGGACGACGGTCCACTAAACTGCAGGGGTTGGGTGAATGGTGACTGC
TGTACAGTACAATACACCCTGATGACTACTGCACTTGTACAGTACACCAT
GATGGCTACGTACAGGACAGTGTATCGCCGGCCTCGAGAGGTAAGGAGCA
TACTTGTAAGGATGTTGTCGCGTGAGAGAGTGAACCCCTGGCAGGCATTC
AGGGCTCCGCACCATCGACCTAGGCCCACGTTGGCACCGAAACTGGTTTG
CGAAGCTACTTGGAAGTACTTCTGAAGGCAGCGCGTGGCAAAGCCGGACT
GTTTGCCATACACAACACGATGATCCTCACATTTAAGTGCGATTGTACCT
CGTTGCCATTTATATGAATCATGACCCTCACATTTCAGCCTCCAGCCAGC
TTTTGCGTGGGTGACTGCTCGATGGATACAGTAGCTGATGTATACTTGTA
CAGTATCTTACTGGGCGGCCTGCTTTGGCCCCGCACGGACGACGGCACAC
TCAGCTGTGGAAGTTTTGAGAGGTACCGCAAGAACTGTTGTATTGACAGG
AACAGCAGAGGGCGAGGTGCAGGCCATGTCACTAAAGACCTCAGCAGTGG
CCCTTCCTTATAGCTCGCCGGGGGAAGTTTGTGTGGGGGAGGGGAGAAAA
GGAGGAGGGGGAGGTGGAGGAGGAGGAGGAGGGGGAGGTTGGGGGGAAGA
ACTGTTGTAGTGTGCTCTGCATGAGTCTTCAAAGGGTTCAACTCTATTTT
ACAGTACCTTAACTTAGCTGTGGTTTCCCAAATGTACGAAAAAACAGGGC
CTGCTGGCGGTGAACAAGACCATGCAGCACCAGAGCCGAGTCATGGCGCT
CCAGGGCGACCTCATCGCCGGCCGGGGTGACCGACAGGTGGGCCGTGCAA
CCTAACCCTAAGAAAGAATTATAGACGCTATGGTTGTGTACTGCAACGGG
GTCGCTCAACCCCGTCGCCTACAATCTCTGAAGACCTTGGCTCCCCGCAA
AAGCGCTGATCTAGAGCTAGAGTATATATCTATAGATCGTCGACATTCGA
TAGTTTGACCTACCCCAAAACTCAAGTAGTTAGTAGCGCCACCCACAAAA
TCAGTCGAGCCCGCTAACTATCTTCTGATCGACATTCCATCACTGGTGCA
CGGTGCCCACCTTGTCTCTGCCACTGCAAGTAGACCGAGCAAACCGGCGG
CCTGCTACACACCGCGGACTGCCGCTGTCTTACCGTTAGCTGGAAGGGAT
GCTTGAAAAAACCTTGAGGCGCAGCTGTACAGTAGGAAGTAGAATGTGTG
CTTCAAGTATGCTTCAAGCTCTAGTGCACTTGCAATGCTGTGTCTCGAAC
TAGGCGCGTGGTCAATGATCTCAGGGCTACGGCAAGCACCACGTGAGTAC
ATATATATATACTGCTGTGTGTATGGTTGTCCTGCTCCACAGTACGAGTA
CTCGCACATAGCTGTATATTGTATGAGTGCTACAGTACTCGAGTACTCGG
TACGTAGAGTAGTGGCAGCACCGTAGAGTACTGTAGAGTACTTGGAAGTA
TGTACTTCGAAGCGGTACGTAGAGTAGTGGCAGCACCGTAGAGTACTGTA
GAGTACTTGGAAGTATGTACTTCGAAGTAATTATGTACCGTACTCGAGTA
CAGTAGTAGGGACCAATCCAAGCTCGACCAAGTCAGAACAACAAACTGAC
TGCTCTGATTAATTAATAAGCAGACGGTTGTGTGATCCCCAGTCTCGCCA
CCGTACAAACTGTGCCACTGGGGTCTGATCCCTGCCTGTATCGCCCCTTC
CTCTCTCCGGCCTCTCCTCCCGTCTCCCCACATCGACCAGGGTTGGCACT
CGGAGGTTAAATAGTGCCTAAGTAGCCTTCATTTTAGGTCTAATTACCCC
TAGTTAACTCTAATTAAGGGCCTAAAAGAGCACCACTTGCGGGCTAAGTG
GCAACCCTGACCTCCACTTCCCTCCCCCCTCCCCTGCTCCTCTCTCTTCT
CCTCGCCTCTCCTTTTCCCCAGGTGCTCCTCCGCGAGCTGGATGCCATCC
GCCCGCCCGTCACCGAACAAGTTTCGGCAGGTACACCTGTGCCTTCAGTG
GGGACCCAGGCCGAGGCCGGGGGTGGGACACCCCCACCTCCCTTGGGGTC
TGGCGAGCCCGTGAGCGACTCAGAAACGCCTGCCATGAACGGAAAGCCCC
TGACCGGCGGCGGCGACATCGAGGCTGTTGATGCTGCGCCGGCGGCGGCA
GCGCCGGCAGCAGTGACGGCGGCGGCGGCGGGGGGGGCTACGGCCCCGGA
AGAGAGAGAGAAGGAGGAGGAGGAGAAATGGCATGAGGCAGTGGCGGTGG
CAGGGCCAGTGGGGGAGGACGCGGCCGCTGCGGCGGACCCGGAGCCCAGG
GAGGTGCCTGGGCTCTGATTGGTG back to topCoding sequence (CDS) from alignment at S-ischiensis_contig12:72804..75777+ >mRNA_S-ischiensis_contig12.2515.1 ID=mRNA_S-ischiensis_contig12.2515.1|Name=mRNA_S-ischiensis_contig12.2515.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1008bp|location=Sequence derived from alignment at S-ischiensis_contig12:72804..75777+ (Schizocladia ischiensis KU_0333)
ATGCATTTCCTTACACAGATGCATTTCCTTACACAGGGCCTGCTGGCGGT
GAACAAGACCATGCAGCACCAGAGCCGAGTCATGGCGCTCCAGGGCGACC
TCATCGCCGGCCGGGGTGACCGACAGGGCCTGCTGGCGGTGAACAAGACC
ATGCAGCACCAGAGCCGAGTCATGGCGCTCCAGGGCGACCTCATCGCCGG
CCGGGGTGACCGACAGGTGCTCCTCCGCGAGCTGGATGCCATCCGCCCGC
CCGTCACCGAACAAGTTTCGGCAGGTACACCTGTGCCTTCAGTGGGGACC
CAGGCCGAGGCCGGGGGTGGGACACCCCCACCTCCCTTGGGGTCTGGCGA
GCCCGTGAGCGACTCAGAAACGCCTGCCATGAACGGAAAGCCCCTGACCG
GCGGCGGCGACATCGAGGCTGTTGATGCTGCGCCGGCGGCGGCAGCGCCG
GCAGCAGTGACGGCGGCGGCGGCGGGGGGGGCTACGGCCCCGGAAGAGAG
AGAGAAGGAGGAGGAGGAGAAATGGCATGAGGCAGTGGCGGTGGCAGGGC
CAGTGGGGGAGGACGCGGCCGCTGCGGCGGACCCGGAGCCCAGGGAGGTG
CCTGGGCTCTGAGTGCTCCTCCGCGAGCTGGATGCCATCCGCCCGCCCGT
CACCGAACAAGTTTCGGCAGGTACACCTGTGCCTTCAGTGGGGACCCAGG
CCGAGGCCGGGGGTGGGACACCCCCACCTCCCTTGGGGTCTGGCGAGCCC
GTGAGCGACTCAGAAACGCCTGCCATGAACGGAAAGCCCCTGACCGGCGG
CGGCGACATCGAGGCTGTTGATGCTGCGCCGGCGGCGGCAGCGCCGGCAG
CAGTGACGGCGGCGGCGGCGGGGGGGGCTACGGCCCCGGAAGAGAGAGAG
AAGGAGGAGGAGGAGAAATGGCATGAGGCAGTGGCGGTGGCAGGGCCAGT
GGGGGAGGACGCGGCCGCTGCGGCGGACCCGGAGCCCAGGGAGGTGCCTG
GGCTCTGA back to top
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