mRNA_S-ischiensis_contig12.2506.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2506.1
Unique NamemRNA_S-ischiensis_contig12.2506.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig12.2506.1 vs. uniprot
Match: D7G180_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G180_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 4.390e-9
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = -2 
Query:   37 SIGNLTFCPLLLVQGNYAEAEPLYRRALDIYEQVHGPEHPRVATALNNLASLL 195
            S+ NL  C  L  QG + EAEPLYRR+L I E+V+GP+HP VAT LNNLA LL
Sbjct:   70 SLNNLAGC--LESQGKHEEAEPLYRRSLAIDEEVYGPDHPEVATDLNNLAGLL 120
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BLAST of mRNA_S-ischiensis_contig12.2506.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 4.710e-9
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = -2 
Query:   34 LTFCPLLLVQGNYAEAEPLYRRALDIYEQVHGPEHPRVATALNNLASLLS 183
            LT+ P    QG +AEAEPLYRRA +I+E   GPEHP++ATALNN A LLS
Sbjct:  727 LTYLPF-TSQGKFAEAEPLYRRATEIWETALGPEHPQMATALNNRAGLLS 775
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BLAST of mRNA_S-ischiensis_contig12.2506.1 vs. uniprot
Match: UPI0013D29528 (tetratricopeptide repeat protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D29528)

HSP 1 Score: 57.8 bits (138), Expect = 6.630e-9
Identity = 28/39 (71.79%), Postives = 30/39 (76.92%), Query Frame = -2 
Query:   40 QGNYAEAEPLYRRALDIYEQVHGPEHPRVATALNNLASL 156
            QG Y EAEPLY+RAL I E V GP+HP VAT LNNLA L
Sbjct:    4 QGKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLAGL 42
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BLAST of mRNA_S-ischiensis_contig12.2506.1 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 8.760e-9
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = -2 
Query:   37 VQGNYAEAEPLYRRALDIYEQVHGPEHPRVATALNNLASLL 159
            +QG YAEAEPLY RA +I+E+  GPEHP VATALNN A LL
Sbjct:  656 IQGEYAEAEPLYARATEIWERALGPEHPLVATALNNRAGLL 696
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BLAST of mRNA_S-ischiensis_contig12.2506.1 vs. uniprot
Match: A0A6H5KN14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN14_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.490e-8
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = -2 
Query:   37 GNYAEAEPLYRRALDIYEQVHGPEHPRVATALNNLASLL 153
            G +AEAEPLYRRA +I+E   GPEHP VATALNN A LL
Sbjct:    2 GKFAEAEPLYRRATEIWETALGPEHPHVATALNNRAGLL 40
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BLAST of mRNA_S-ischiensis_contig12.2506.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 3.060e-8
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = -2 
Query:   37 VQGNYAEAEPLYRRALDIYEQVHGPEHPRVATALNNLASLL 159
            +QG YAEAEPLY R+L I E+V GPEHP VAT+L+N ASLL
Sbjct:  692 IQGKYAEAEPLYERSLAIQEKVLGPEHPDVATSLDNRASLL 732
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BLAST of mRNA_S-ischiensis_contig12.2506.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.940e-8
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = -2 
Query:   34 CPLLLVQGNYAEAEPLYRRALDIYEQVHGPEHPRVATALNNLASLLS 174
            C   + QG Y EAEPLY+R+L I E+V+GP+HP VATALNN   LLS
Sbjct:  345 CLSFMFQGKYDEAEPLYKRSLAIDEKVYGPDHPDVATALNNWVRLLS 391
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BLAST of mRNA_S-ischiensis_contig12.2506.1 vs. uniprot
Match: A0A6H5J9V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9V8_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 7.590e-8
Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = -2 
Query:   37 DVVLGLNNLASLLSI----GNLTFCPLLLVQGNYAEAEPLYRRALDIYEQVHGPEHPRVATALNNLASLL 234
            ++  GLNN A LLS      N +    +  QG Y  AEPLY R+L I E+V+GP+HP VAT+LNN A  L
Sbjct:  365 EIATGLNNWAGLLSSQHHEANFSLAFRVPCQGKYDAAEPLYVRSLAIREKVYGPDHPEVATSLNNRAEFL 434
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BLAST of mRNA_S-ischiensis_contig12.2506.1 vs. uniprot
Match: A0A2E7RJA7_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E7RJA7_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 9.540e-8
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = -2 
Query:   49 LLLVQGNYAEAEPLYRRALDIYEQVHGPEHPRVATALNNL 168
            LL  +G+YAEA PL+ RAL I+E+  GPEHPRVATALNNL
Sbjct:    4 LLYDKGSYAEARPLFARALAIWEKALGPEHPRVATALNNL 43
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BLAST of mRNA_S-ischiensis_contig12.2506.1 vs. uniprot
Match: UPI0013D05A06 (tetratricopeptide repeat-containing protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D05A06)

HSP 1 Score: 57.8 bits (138), Expect = 1.120e-7
Identity = 28/39 (71.79%), Postives = 30/39 (76.92%), Query Frame = -2 
Query:   40 QGNYAEAEPLYRRALDIYEQVHGPEHPRVATALNNLASL 156
            QG Y EAEPLY+RAL I E V GP+HP VAT LNNLA L
Sbjct:    4 QGKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLAGL 42
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G180_ECTSI4.390e-962.26TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JJK0_9PHAE4.710e-964.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0013D295286.630e-971.79tetratricopeptide repeat protein n=1 Tax=Desulfoba... [more]
A0A6H5KU94_9PHAE8.760e-970.73NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KN14_9PHAE2.490e-871.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G722_ECTSI3.060e-870.73NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KIY6_9PHAE3.940e-861.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9V8_9PHAE7.590e-848.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2E7RJA7_9BACT9.540e-870.00Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
UPI0013D05A061.120e-771.79tetratricopeptide repeat-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:3052..6951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size325
Cds size168
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2506.1prot_S-ischiensis_contig12.2506.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 5418..6884 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.0329683-UTR-S-ischiensis_contig12:3051..30971622815631.0329683-UTR-S-ischiensis_contig12:3051..3097Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 3052..3097 +
1695739815.6193326-UTR-S-ischiensis_contig12:3051..30971695739815.6193326-UTR-S-ischiensis_contig12:3051..3097Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 3052..3097 +
1622815631.0436597-UTR-S-ischiensis_contig12:5373..54171622815631.0436597-UTR-S-ischiensis_contig12:5373..5417Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 5374..5417 +
1695739815.6282082-UTR-S-ischiensis_contig12:5373..54171695739815.6282082-UTR-S-ischiensis_contig12:5373..5417Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 5374..5417 +
1622815631.086651-UTR-S-ischiensis_contig12:6884..69511622815631.086651-UTR-S-ischiensis_contig12:6884..6951Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 6885..6951 +
1695739815.6714907-UTR-S-ischiensis_contig12:6884..69511695739815.6714907-UTR-S-ischiensis_contig12:6884..6951Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 6885..6951 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.055579-CDS-S-ischiensis_contig12:5417..55371622815631.055579-CDS-S-ischiensis_contig12:5417..5537Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 5418..5537 +
1695739815.6372392-CDS-S-ischiensis_contig12:5417..55371695739815.6372392-CDS-S-ischiensis_contig12:5417..5537Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 5418..5537 +
1622815631.0731704-CDS-S-ischiensis_contig12:6836..68841622815631.0731704-CDS-S-ischiensis_contig12:6836..6884Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 6837..6884 +
1695739815.650341-CDS-S-ischiensis_contig12:6836..68841695739815.650341-CDS-S-ischiensis_contig12:6836..6884Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 6837..6884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2506.1

>prot_S-ischiensis_contig12.2506.1 ID=prot_S-ischiensis_contig12.2506.1|Name=mRNA_S-ischiensis_contig12.2506.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=56bp
MDLLVDIQSPPVQRFRLRVVALYQQKRAKGQVSYAQQRGQVVEAQHYIHG
NVLGK*
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mRNA from alignment at S-ischiensis_contig12:3052..6951+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2506.1 ID=mRNA_S-ischiensis_contig12.2506.1|Name=mRNA_S-ischiensis_contig12.2506.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3900bp|location=Sequence derived from alignment at S-ischiensis_contig12:3052..6951+ (Schizocladia ischiensis KU_0333)
TGCACGCAAATAGAGTCAGATTCCGGGTGGAGGGCTCAACAACGAGGCCA
GGTTGTTGAGAGCTAGAGAACTACACATGGGACAAGTAGCCCCTCACTGA
GGACTAAGGCTGAAATGACCATGATGCCACGCCTGGGCGGTCAATGCCCT
CACTGGGCTTCAACAACACATATTTAGACCATCTATTCTCACCTGGTCGC
TCAACAACAAGGCCAGGTTGTTGAGCGATTGGGCCACGTGCGGGTGGTCA
GGACCCAGCGTGGCCTCCCGAATCCTGAGAGAACGGCGGTAGAGCGGCTC
TGCCTCCTCGTACTTGGCCTGTGTACATCGAGAGAGGCAATGGGTGAGGA
CCAAGGATGTGCCACATCTGCGTGGCCCAACAACGCCAATTTAGAACAAT
TTTCTCCCACCTGGGCCCTCAGCAACCCCGCCAGCCCGCTGAGCGATCCG
GCCACATCCGGGTGGTCAGGACCCAGCGTGGCCTCCCGAATCCTGAGAGA
ACGGCGGTAGAGTGGCTCTGCCTCCTCGTACTTGGCCTGTGCACATCGAG
AGAGGCAATGGGTGAGGACCAAGGATGTGCCACATCTGCGTGGCCCAACA
AAGCCAATTTAGTTCAAAATGGGTGAGGACCAAGGATGTGCCACATCTGC
GTGGCCCAACAAAGCCAATTTCGTTcCCATGTGGAAACTCAATATGCCTG
CCAAAAGAAATTTCCCCACAAGACAAATTTAGAACATTTCATCCCACCTG
GGCCCTAAGCAAGAGCCTCATCAACACAACCAGATGAATATTCTAGGAAC
GTGCGGTTACATTCTCATGCAAACACTCAATAAACCTGCCACAAGAAATT
TCCCCACATGACAATTTTAGAACAATTTCTTCCCACCTGGTCCTCCAACA
ACCCCGCCTGGTTGTTGAGCGTCGAAGCATAGTTTGGGTGCTCCTCTCCC
ACGGAGCCCTTGAAGATATCGAGGGCTCGCTGGTAGAGTGGCTCTGCCTC
CTCGTATTTGGCCTGCAATGCCGCAAGCGGGGTTACAAGGGCAGGCTCAG
TGTGTGGAGCTCAACAACGAGGCCAGGTTGTTGAGCGATTGGGCCACATC
CGGGTGGTCAGGACCCAGCGTGGCCTCCCGAATCCTGAGAGAACGGCGGT
AGAGCGGCTCTGCCTCCTCGTACTTGGCCTGTGTACATCGAGAGAGGCAA
TGGGTGAGGACCAAGGATGTGCCACATCTGCGTGCCCCAACAACGTCAAT
TTAGAACAATTTTCTCCCACCTGGGCCCTCAGCAACTGCGCCAGGTTGTT
GAGCGACTGGGCCACATCCGGGTGGTCAGGACCCAGCGTGGCCTCCCGAA
TCCTGAGAGAACGGAGGTAGAGCGGCTCTGCCTCCTCGTACTTGGCCTGT
GTACATCGAGAGAGGCAATGGGTGAGGACCAAGGATGTGCCACATCTGCG
TGGCCCAACAACGCTAATTTAGAACAATTTTCTCCCACCTGGGCCTTCAG
CAACACCGCCAGGTTGTTGAGCTTCAACGTCACAGCCACAGGAATATTCC
AGAAAACTGCACTTCTTGTTCTCACGTACAAAGTCCATAAACCCACCACA
AGAAATTTCCTCACAAGACAAATTTAGAACAATTTCTTCCCACCTGGTCC
TTCAACAAGCAGGCCAGGTTGTTGAGCCCTGCGGCCACGCGTGGGTGCTC
AGGCCCCAGTGCTGTCTCCCAGATACCCACAGCCCTCTCATACAGGGGCT
TGACTTCGTCCAGCTTGCCCTGTCAGGGTTGCAGTGCCACAGGAATATTC
TAGGAAAGTGAGGTTCACGTTCTCATGTGGAAACTCGATAAGCCTGCCAA
AAGAAATTTCCCCACAAGACAAATTTAGAACATTTCATCCCACCTGGGCC
CTCAGCAACAGGCCAGGTTGTTGAGCATCAACGTCACAGCCACAGGAATA
TTCCAGAAAAGTGCACTTCTTGTTCTCACGTACAAAATCCATAAACCCAC
CACAAGAAATTTCCTCACAAGACAAATTTAGAACAATTTCTTCCCACCTG
GTCCTTCAACAACGCCGCCAAAGCAAAACCACCAATAGCTTTCAGAAGAG
TATGACCTATTATGACCAAGTATGACCAAAGCAAAACCACCAATAACTTT
CAGAAGAGTATGACCAAGGCCAGGTTGTTGAGGCCCAACACTACATCCAC
GGGAATGTTCTAGGAAAGTGAGGTTCTAGTTCTCATATATCACTCAAGAA
ACCTGCCGAAAGAAATTTCCCCACAAGACAAATTTAGAACAGTTTCTTCC
CACCTGGTCCTCCAACAACGAGGCCAGGTTGTTGAGGGCTGTGGCCACCC
GGGGGTGCTCAGGGCCATGGACCTGCTCGTAGATATCCAGAGCCCTCCTG
TACAGCGGTTCCGCCTCCGCGTAGTTGCCCTGTACCAGCAGAAGAGGGCA
AAAGGTCAGGTTTCCTATGCTCAACAACGAGGCCAGGTTGTTGAGCCTTG
TGGCCACGGTTGGGTGGACCGGGCCAAGCACCTGCTCTGAGATCTTCAGG
GCCCTCTGACAGAGGGGCATGGCCTCCTCGCACTTGGCCTGCATCATCGT
GCACGTAAAGAGAGTCAGATTCCGGGTGGAGGGCTCAACAACGACGTCAG
ATTCCGGGTGGAGGGCTCAACAACGAGGCCTCGTTGTTGAGCTCCACACA
CTGAACCTGCCCTTGTAACCCCGCTTGCGGCATTGCAGGCCAAGTACGAG
GAGGCAGAGCCACTCTACCAGCGAGTCCTCGATATCCTCAAGGGCTCCGT
GGGAGAGGAGCACCCAAACTATGCTTCGACGCTCAACAACCTGGCCCAGG
TTGTTGAGAGCTAGAGAACTACACATGGGACAAGTAGCCCCTCACTGAGG
ACTCTAAGGCTGAAATGACCATGATGCCACGCCTGGGCGGTCAACGCCCT
CACTGGGCCTCAACAACACAAATTTAGACCATCTATCCTCACCTGGTCGC
TCAACAACATGGCCAGGTTGTTGAGGTGTGTAGCCACATCCGGGTGGTCA
GGGCCGTACACTCTCTCAGCGATCTCAAGAGACCGCCTGTACAAGGGCTC
CGCCTCATCGTACTTGCCCTATGTCATATGGGGAAGAGGGCAGCAAAAGA
AAAAGGGAGTCAGATCACTTGTTATGCTCAGCAACGAGGCCAGGTTGTTG
AGGGCTGTGGCCACCCAGGGGCGCTCAGGGCCATGGACCTGCTCGTAGAT
ATCCAGAGCCCTCCTGTACAGGGATTCCGCCTCCGCGTAGTTGCCCTGTA
CCAGCAGAAGAGGGCAAAAGGTCAGGTTTCCTATGCTCAACAACGAGGCC
AGGTTGTTGAGCGATCCGGCCACATCCGGGTGGTCAGGACCCAGCGTGGC
CTCCCGAATCCTGAGAGAACGGCGGTAGAGCGGCTCTGCCTCCTCGTACT
TGGCCTGTGTACATCGAGAGAGGCAATGGGTGAGGACCAAGGATGTGCCA
CATCTGCGTGGCCCAACAACGCCAATTTAGAACAATTTTTTCCCACCTGG
GCCCTCAGCAACCCTGCCAGGCCCTAACCCTAACCTGGGCCCTCAGCAAC
CCCGCCAGGCCCTGGCCTCGTTGTTGAGCTCCACACACTGAACCTGCCCT
TGTAACCCCGCTGGCGGCATTGCAGGCCAAGTACGAGGAGGCAGAGCCAC
TCTACCAGCGAGTCCTCGATATCCTCAAGGGCTCCGTGGGAGAGGAGCAC
CCAAACTATGCTTCGACGCTCAACAACCTGGCCAGGTTGTTGAGGCCCAA
CACTACATCCACGGGAATGTTCTAGGAAAGTGAGGTTCTAGTTCTCATAT
ATCACTCAAGAAACCTGCCGAAAGAAATTTCCCCACCAGACAAATTTAGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig12:3052..6951+

>mRNA_S-ischiensis_contig12.2506.1 ID=mRNA_S-ischiensis_contig12.2506.1|Name=mRNA_S-ischiensis_contig12.2506.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=336bp|location=Sequence derived from alignment at S-ischiensis_contig12:3052..6951+ (Schizocladia ischiensis KU_0333)
ATGGACCTGCTCGTAGATATCCAGAGCCCTCCTGTACAGCGGTTCCGCCT
CCGCGTAGTTGCCCTGTACCAGCAGAAGAGGGCAAAAGGTCAGGTTTCCT
ATGCTCAACAACGAGGCCAGATGGACCTGCTCGTAGATATCCAGAGCCCT
CCTGTACAGCGGTTCCGCCTCCGCGTAGTTGCCCTGTACCAGCAGAAGAG
GGCAAAAGGTCAGGTTTCCTATGCTCAACAACGAGGCCAGGTTGTTGAGG
CCCAACACTACATCCACGGGAATGTTCTAGGAAAGTGAGTTGTTGAGGCC
CAACACTACATCCACGGGAATGTTCTAGGAAAGTGA
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