mRNA_S-ischiensis_contig111.2430.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig111.2430.1
Unique NamemRNA_S-ischiensis_contig111.2430.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig111.2430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig111contigS-ischiensis_contig111:113494..113903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size411
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.913423-CDS-S-ischiensis_contig111:113493..1139011622815622.913423-CDS-S-ischiensis_contig111:113493..113901Schizocladia ischiensis KU_0333CDSS-ischiensis_contig111 113494..113901 +
1695739810.5402987-CDS-S-ischiensis_contig111:113493..1139011695739810.5402987-CDS-S-ischiensis_contig111:113493..113901Schizocladia ischiensis KU_0333CDSS-ischiensis_contig111 113494..113901 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig111.2430.1prot_S-ischiensis_contig111.2430.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig111 113494..113901 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig111.2430.1

>prot_S-ischiensis_contig111.2430.1 ID=prot_S-ischiensis_contig111.2430.1|Name=mRNA_S-ischiensis_contig111.2430.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=136bp
GGGGAPAALPTAVPTARLPLPPNVLSVSSCRIHGGASGGAGSAQAPLVSG
GLASRTPAQGLPSEGCGAVPTPGAGSWGSGYPPQPADSGWAVLSVSSKGV
LAGFHAPCSPADLEEWVLDPGRGGVGGGGCTGPGQE
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mRNA from alignment at S-ischiensis_contig111:113494..113903+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig111.2430.1 ID=mRNA_S-ischiensis_contig111.2430.1|Name=mRNA_S-ischiensis_contig111.2430.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=410bp|location=Sequence derived from alignment at S-ischiensis_contig111:113494..113903+ (Schizocladia ischiensis KU_0333)
GGCGGTGGCGGCGCACCCGCCGCGCTGCCCACCGCTGTGCCGACCGCCCG
CCTACCCTTGCCGCCAAACGTGCTGTCTGTGTCCTCCTGCCGTATCCACG
GCGGAGCCTCCGGTGGCGCCGGATCGGCCCAGGCCCCGCTGGTGAGCGGC
GGCCTAGCTAGCCGCACGCCTGCCCAGGGCCTCCCGTCCGAGGGCTGTGG
CGCTGTGCCCACCCCTGGTGCTGGTAGTTGGGGCAGCGGATACCCCCCTC
AGCCCGCGGACTCAGGCTGGGCGGTTTTGTCGGTTTCGTCCAAGGGGGTT
CTGGCCGGCTTCCACGCCCCGTGCTCGCCCGCCGACCTGGAGGAGTGGGT
ACTGGATCCGGGCCGGGGTGGGGTTGGCGGCGGTGGCTGCACGGGCCCGG
GGCAGGAGAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig111:113494..113903+

>mRNA_S-ischiensis_contig111.2430.1 ID=mRNA_S-ischiensis_contig111.2430.1|Name=mRNA_S-ischiensis_contig111.2430.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=816bp|location=Sequence derived from alignment at S-ischiensis_contig111:113494..113903+ (Schizocladia ischiensis KU_0333)
GGCGGTGGCGGCGCACCCGCCGCGCTGCCCACCGCTGTGCCGACCGCCCG
CCTACCCTTGCCGCCAAACGTGCTGTCTGTGTCCTCCTGCCGTATCCACG
GCGGAGCCTCCGGTGGCGCCGGATCGGCCCAGGCCCCGCTGGTGAGCGGC
GGCCTAGCTAGCCGCACGCCTGCCCAGGGCCTCCCGTCCGAGGGCTGTGG
CGCTGTGCCCACCCCTGGTGCTGGTAGTTGGGGCAGCGGATACCCCCCTC
AGCCCGCGGACTCAGGCTGGGCGGTTTTGTCGGTTTCGTCCAAGGGGGTT
CTGGCCGGCTTCCACGCCCCGTGCTCGCCCGCCGACCTGGAGGAGTGGGT
ACTGGATCCGGGCCGGGGTGGGGTTGGCGGCGGTGGCTGCACGGGCCCGG
GGCAGGAGGGCGGTGGCGGCGCACCCGCCGCGCTGCCCACCGCTGTGCCG
ACCGCCCGCCTACCCTTGCCGCCAAACGTGCTGTCTGTGTCCTCCTGCCG
TATCCACGGCGGAGCCTCCGGTGGCGCCGGATCGGCCCAGGCCCCGCTGG
TGAGCGGCGGCCTAGCTAGCCGCACGCCTGCCCAGGGCCTCCCGTCCGAG
GGCTGTGGCGCTGTGCCCACCCCTGGTGCTGGTAGTTGGGGCAGCGGATA
CCCCCCTCAGCCCGCGGACTCAGGCTGGGCGGTTTTGTCGGTTTCGTCCA
AGGGGGTTCTGGCCGGCTTCCACGCCCCGTGCTCGCCCGCCGACCTGGAG
GAGTGGGTACTGGATCCGGGCCGGGGTGGGGTTGGCGGCGGTGGCTGCAC
GGGCCCGGGGCAGGAG
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