mRNA_S-ischiensis_contig11.2241.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2241.1
Unique NamemRNA_S-ischiensis_contig11.2241.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig11.2241.1 vs. uniprot
Match: A0A1V9Z907_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z907_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 7.520e-7
Identity = 44/129 (34.11%), Postives = 67/129 (51.94%), Query Frame = 3 
Query:  120 AIVAVQAAFRARLDRDRLLRYVNHRFVEMTDAETGATYYHCKERGVSQWERPAGFGAAAAPRRGRERRRAMSEEEAAVKIQSALRAKQARKHIAALVVGSRRFEKYLD-ASGHYYYHDTRTGDSSWQLP 503
            A+  +Q  ++ R  R+RL   +   + EM D  TG  YY  K   +++W++P         +R   R++ MS  EAA+ IQ A RA+QAR  I  LV     + +  D A+G YYY++  T  +SW  P
Sbjct:  206 AVRKIQDMWKVRKARNRLRLMIQSIYAEMVDPATGQVYYLNKRTNMTRWDKPKALETT--NQRKPRRKKPMSPHEAALFIQKAFRARQARLAIRRLVRSV--YVRVQDPATGKYYYYNKYTNTTSWTKP 330
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BLAST of mRNA_S-ischiensis_contig11.2241.1 vs. uniprot
Match: K3WKB7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKB7_GLOUD)

HSP 1 Score: 57.8 bits (138), Expect = 4.890e-6
Identity = 46/143 (32.17%), Postives = 70/143 (48.95%), Query Frame = 3 
Query:  117 SAIVAVQAAFRARLDRDRLLRYVNHRFVEMTDAETGATYYHCKERGVSQWERPAGFGAA--AAPRRGRERR----------RAMSEEEAAVKIQSALRAKQARKHIAAL--VVGSRRFEKYLDASGHYYYHDTRTGDSSWQLP 503
            +A + +Q   R R  RD + R ++  + ++ DA TG  YYH  +     WERP     A    PR  ++R+          RAM+ E AA  +Q A R K+  + +  L   V  R ++   DA   YYYH+TRT  ++W+ P
Sbjct:  121 AAALCIQRMLRVRAARDHMRRLISSVYEKIWDATTGRFYYHNTQSKQVSWERPRWVNDADLGTPRTRQQRQQQRDAKALLHRAMTPEHAATLVQRAYRRKRGFETLLMLCRAVYERIYDPNQDA---YYYHNTRTKQTTWEKP 260
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1V9Z907_9STRA7.520e-734.11Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
K3WKB7_GLOUD4.890e-632.17Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:2227592..2229761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size780
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2241.1prot_S-ischiensis_contig11.2241.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 2227818..2229322 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.1261668-UTR-S-ischiensis_contig11:2227591..22278171622815609.1261668-UTR-S-ischiensis_contig11:2227591..2227817Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2227592..2227817 -
1695739801.2226596-UTR-S-ischiensis_contig11:2227591..22278171695739801.2226596-UTR-S-ischiensis_contig11:2227591..2227817Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2227592..2227817 -
1622815609.160672-UTR-S-ischiensis_contig11:2229322..22294211622815609.160672-UTR-S-ischiensis_contig11:2229322..2229421Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2229323..2229421 -
1695739801.248929-UTR-S-ischiensis_contig11:2229322..22294211695739801.248929-UTR-S-ischiensis_contig11:2229322..2229421Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2229323..2229421 -
1622815609.175854-UTR-S-ischiensis_contig11:2229657..22297611622815609.175854-UTR-S-ischiensis_contig11:2229657..2229761Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2229658..2229761 -
1695739801.2577465-UTR-S-ischiensis_contig11:2229657..22297611695739801.2577465-UTR-S-ischiensis_contig11:2229657..2229761Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2229658..2229761 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.1375587-CDS-S-ischiensis_contig11:2227817..22280151622815609.1375587-CDS-S-ischiensis_contig11:2227817..2228015Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2227818..2228015 -
1695739801.2314844-CDS-S-ischiensis_contig11:2227817..22280151695739801.2314844-CDS-S-ischiensis_contig11:2227817..2228015Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2227818..2228015 -
1622815609.148147-CDS-S-ischiensis_contig11:2229169..22293221622815609.148147-CDS-S-ischiensis_contig11:2229169..2229322Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2229170..2229322 -
1695739801.2399921-CDS-S-ischiensis_contig11:2229169..22293221695739801.2399921-CDS-S-ischiensis_contig11:2229169..2229322Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2229170..2229322 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2241.1

>prot_S-ischiensis_contig11.2241.1 ID=prot_S-ischiensis_contig11.2241.1|Name=mRNA_S-ischiensis_contig11.2241.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=117bp
MTDAETGATYYHCKERGVSQWERPAGFGAAAAPRRGRERRRAMSEEEAAV
KIQSALRAKQARKHIAALVVGSRRFEKYLDASGHYYYHDTRTGDSSWQLP
FGVTDGRNLNTAGRAE*
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mRNA from alignment at S-ischiensis_contig11:2227592..2229761-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2241.1 ID=mRNA_S-ischiensis_contig11.2241.1|Name=mRNA_S-ischiensis_contig11.2241.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2170bp|location=Sequence derived from alignment at S-ischiensis_contig11:2227592..2229761- (Schizocladia ischiensis KU_0333)
GCGGGAGCCAAGACGGCGGCTCCGGCTCCGCCCCACGAGAGGCGGAGGCC
TTGTGGGAATCGGCCACGAGCGAGGGCGCGGAGAGCGTGGAGAACGGCTC
GCAGGTAACCATGGCGCAAAATCACGATCGCTGTTTTTGGTGCCCAGGCC
GCCCTATGAAGGACGCGTCGGATGGCCGTGAAATTTTGACACATCAAAGA
GCTCAATGAGCACGTTCATTTGCGCTATAATTTTCGTATCACAACAGCAC
GTGGACCGAGCAACAGGTCAATCGATATTCGATTGAACTACTCATATTTG
GGCGAAAAAACTCGCGCTTTTGTGCCATGGCTACTCGCAGGAGGGGGTGA
TCTCGGCGATCGTGGCGGTGCAGGCGGCCTTCCGCGCGCGCCTGGACCGG
GACCGGCTGTTGCGGTACGTGAATCACCGGTTTGTGGAAATGACGGACGC
GGAGACGGGGGCCACGTACTACCACTGTAAGGAGCGGGGGGTGAGCCAGT
GGGAGAGGCCGGCCGGTTTCGGGGCGGCCGCCGCGCCGCGCCGGGGGCGA
GAAAGGAGAAGGGCCATGTCCGAGGAGGAGGCGGCCGTTAAGGTGGGCTG
TTCCCCATCGCCTTTTTGAACCCCTTGCTGTTACTGTGCACGATTGTTGA
CTGCTTCGAAGTACTTGAGTATGAGCCGCGAGAAGGGCCATGTCCGAGGC
GGAGGCAGCCGTTAAGGTGAGCTGCTTGCTGCCCATCGCTTGAACCGCTT
GCCGTTACAGTAGAGTAGAGGATTGTTGGCTGGTTCGAAGTACTTGAGTG
TGATGCGTGATTGCCATGGGGATTTGTGGGGAGCCACGGGGGCTCGAGCG
AGGCAGTGGTGAGTATTTATGCGGAGCGATGTCCTGATTGGGTTTGTCAA
CTACGGGCTTTGAAGTCGTACGGGGATGGTTTTTCCGTTCCTCACTGCAA
TACTTGGAAGTGCTGCATACGCCTATCCTATAGTTCCGTGTGCTGTCGTT
CTCCAAGGGTTGAAAATGCTTACCAGGACAACGGTGCGCTAACTTGAAGC
TGGTTTAGTACCATAAACTGCTCCGCCTCGAACGAGGCGCGGGGTCAATG
GTCTCGGGACTACGGCAAGCACCACGTGAGTACATACATAAAGTGCAACT
TCTGCTCCTCACTACAGTAGCTCTAAGACGGGTACTTTTGCAGTTAAGCC
TCACTCGGCTTACCAGGCGTTTTCAGCTTGTTGTTGTACGAAGTATGCGC
ACTACTGCACGCGACAGCTGGAAGTAGTACAGTAAGTAGTTATCAATTCC
AAGTACTAAAGTCTTAGGAACAACACGGTAGAGTAGTTATTACTTCGAAG
TACTAAAGTCTTAGGAACAGCAAGAGTGCAATAGTTTGTGGAGTGCCAAG
CCTCCCTGGCCAGCACCACCCCGCCCACACACCCACACACCCACACCCAC
CCACACTTGCTCAGTACAGTACTCATACACTCCAACCTACCCATGCCCGG
AATGCTTGCCGCGTCCCGCAACCCATTACGGGCTCTCTCTCGACACACCG
AGGAGCAGATCCAGAGCGCCCTCCGCGCCAAGCAGGCACGCAAGCACACA
CACACACACACGCACACACACATACACACACACACTTGCTCAGTACGGTA
CTCGTACTCGAGTACATCTCCAACTTACCCATGCCCGGAATGCTCGCCGC
GCCCCGCCGCAACCCCAACGTGCTCTCTCTCGACACCGACGAGCAGATCC
AGAGCGCCCTCCGCGCGAAGCAGGCGCGCAAGCACATCGCCGCCCTGGTG
GTGGGGTCGCGGCGCTTCGAGAAGTACTTGGACGCCTCCGGGCACTACTA
CTACCACGACACGCGCACGGGAGACAGCTCGTGGCAGCTGCCCTTTGGAG
TAACCGACGGCAGGAACTTGAACACTGCGGGCCGCGCGGAGTAATTTAAT
GTGGGGTGTATACGGCGTGGCCGCCGTGGGGGCCAAATCTGCTATGAGGC
GGTCTTCAGGCTGTGGCTGTGGCTGGCTGGCCTGTGGTTTGGGACGGCAA
TGCAGGCTGTTGTAGGGAGTAGACGTATAGTAGTAGCAGGAACAATACGG
GGCGAGGTGCAGGCCACGTCACTAGAGACCTCAACAGTGGCCCTTCCTTA
GTTCCCGGGGAAAGTTTGGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:2227592..2229761-

>mRNA_S-ischiensis_contig11.2241.1 ID=mRNA_S-ischiensis_contig11.2241.1|Name=mRNA_S-ischiensis_contig11.2241.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=702bp|location=Sequence derived from alignment at S-ischiensis_contig11:2227592..2229761- (Schizocladia ischiensis KU_0333)
ATGACGGACGCGGAGACGGGGGCCACGTACTACCACTGTAAGGAGCGGGG
GGTGAGCCAGTGGGAGAGGCCGGCCGGTTTCGGGGCGGCCGCCGCGCCGC
GCCGGGGGCGAGAAAGGAGAAGGGCCATGTCCGAGGAGGAGGCGGCCGTT
AAGATGACGGACGCGGAGACGGGGGCCACGTACTACCACTGTAAGGAGCG
GGGGGTGAGCCAGTGGGAGAGGCCGGCCGGTTTCGGGGCGGCCGCCGCGC
CGCGCCGGGGGCGAGAAAGGAGAAGGGCCATGTCCGAGGAGGAGGCGGCC
GTTAAGATCCAGAGCGCCCTCCGCGCGAAGCAGGCGCGCAAGCACATCGC
CGCCCTGGTGGTGGGGTCGCGGCGCTTCGAGAAGTACTTGGACGCCTCCG
GGCACTACTACTACCACGACACGCGCACGGGAGACAGCTCGTGGCAGCTG
CCCTTTGGAGTAACCGACGGCAGGAACTTGAACACTGCGGGCCGCGCGGA
GTAAATCCAGAGCGCCCTCCGCGCGAAGCAGGCGCGCAAGCACATCGCCG
CCCTGGTGGTGGGGTCGCGGCGCTTCGAGAAGTACTTGGACGCCTCCGGG
CACTACTACTACCACGACACGCGCACGGGAGACAGCTCGTGGCAGCTGCC
CTTTGGAGTAACCGACGGCAGGAACTTGAACACTGCGGGCCGCGCGGAGT
AA
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