mRNA_S-ischiensis_contig11.2204.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2204.1
Unique NamemRNA_S-ischiensis_contig11.2204.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig11.2204.1 vs. uniprot
Match: A0A7S2TQT0_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TQT0_9EUKA)

HSP 1 Score: 112 bits (281), Expect = 1.430e-27
Identity = 50/95 (52.63%), Postives = 65/95 (68.42%), Query Frame = 1 
Query:  223 DTRYWDYTVRMITKGDLGHTCRSCKRPFVSLREEIAVRRGGRIELRYHAQGCFSYQADPRTQPGSSADTGKFAARLKGTVAPKDMYRKMRTSSHW 507
            +++YW +  R     DLGHTCR CKRP   + E IA+RRGGRIE+RYH + CFS ++DPRTQ  +S   GK+   + GT AP   Y+KMRT+SHW
Sbjct:   28 ESQYWQHRYRPCVARDLGHTCRECKRPLTKIGETIAIRRGGRIEMRYH-EACFSGESDPRTQKKASHKQGKWVRCVAGTKAPLGKYKKMRTTSHW 121
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BLAST of mRNA_S-ischiensis_contig11.2204.1 vs. uniprot
Match: A0A7S1LEE0_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1LEE0_NEODS)

HSP 1 Score: 98.2 bits (243), Expect = 3.800e-22
Identity = 50/94 (53.19%), Postives = 60/94 (63.83%), Query Frame = 1 
Query:  226 TRYWDYTVRMITKGDLGHTCRSCKRPFVSLREEIAVRRGGRIELRYHAQGCFSYQADPRTQPGSSADTGKFAARLKGTVAPKDMYRKMRTSSHW 507
            T YW    R     D+GH C+ CKRPF  + E + VRRGGRIELRYH Q C+S  ADPRTQ  SS ++ + AA L    AP   +RKMRTSSH+
Sbjct:   16 TAYWASQARSCEPRDVGHPCKECKRPFQRVGEPLMVRRGGRIELRYHEQ-CYSGSADPRTQASSSFNSSQHAAALSA-AAPALPFRKMRTSSHF 107
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BLAST of mRNA_S-ischiensis_contig11.2204.1 vs. uniprot
Match: A0A2C6L8F3_9APIC (Uncharacterized protein n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6L8F3_9APIC)

HSP 1 Score: 64.7 bits (156), Expect = 2.760e-8
Identity = 34/79 (43.04%), Postives = 44/79 (55.70%), Query Frame = 1 
Query:  232 YWDYTVRMITKGDLGHTCRSCKRPFVSLREEIAVRRGGRIELRYHAQGCFSYQADPRTQPGSSADTGKFAARLKGTVAP 468
            YW  +  ++ +   GH CR CK+  +   EE  VR G ++   YH + CFS  ADPRTQ GSSA   +F A L  T AP
Sbjct:   86 YWTVSRGIVNR--FGHACRECKKG-IGKNEEAVVRDGRKLRFFYHPE-CFSGDADPRTQTGSSAHDVRFRAMLSNTTAP 160
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BLAST of mRNA_S-ischiensis_contig11.2204.1 vs. uniprot
Match: A0A0L0DNU8_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DNU8_THETB)

HSP 1 Score: 56.6 bits (135), Expect = 2.140e-6
Identity = 34/79 (43.04%), Postives = 43/79 (54.43%), Query Frame = 1 
Query:  232 YWDYTVRMITKGDLGHTCRSCKRPFVSLREEIAVRRGGRIELRYHAQGCFSYQADPRTQPGSSADTGKFAARLKGTVAP 468
            YW      + +G   H CR CK  +++   +  +R G RI+LRYH Q CFS  ADPR+Q GSS  T K   RL    AP
Sbjct:   58 YWRIERGRVAEGTR-HLCRECK-AYITKGSKYIIRHGARIQLRYH-QECFSGDADPRSQAGSSYATDK--KRLNIAQAP 131
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BLAST of mRNA_S-ischiensis_contig11.2204.1 vs. uniprot
Match: A0A7S0VGT0_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VGT0_9CRYP)

HSP 1 Score: 54.7 bits (130), Expect = 6.540e-6
Identity = 29/70 (41.43%), Postives = 39/70 (55.71%), Query Frame = 1 
Query:  274 GHTCRSCKRPFVSLREEIAVRRGGRIELRYHAQGCFSYQADPRTQPGSSADTGKFAARLKGTVAPKDMYR 483
            G TCR C++P     + +  R G +I + YH++ CFS  ADPRTQ GSSA+ G+  A      AP    R
Sbjct:   12 GWTCRECRKPIFK-GDPMVSRDGRKIRMMYHSE-CFSGDADPRTQEGSSANEGRLPATSFSPKAPASKGR 79
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BLAST of mRNA_S-ischiensis_contig11.2204.1 vs. uniprot
Match: A0A0L0HC42_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HC42_SPIPD)

HSP 1 Score: 51.6 bits (122), Expect = 9.540e-5
Identity = 31/76 (40.79%), Postives = 41/76 (53.95%), Query Frame = 1 
Query:  280 TCRSCKRPFVSLREEIAVRRGGRIELRYHAQGCFSYQADPRTQPGSSADTGKFA-ARLKGTVAPKDMYRKMRTSSH 504
            TCR C+R      E + VR G +I L YH + CFS  ADPRTQ GSS    +++ ARL  T  P   + K   + +
Sbjct:   19 TCRECRRTIYK-DEHVKVRDGRKIRLFYHPE-CFSGDADPRTQAGSSYHDPRYSTARLAPTAPPVKGHGKWSVNQY 92
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S2TQT0_9EUKA1.430e-2752.63Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S1LEE0_NEODS3.800e-2253.19Hypothetical protein n=1 Tax=Neobodo designis TaxI... [more]
A0A2C6L8F3_9APIC2.760e-843.04Uncharacterized protein n=1 Tax=Cystoisospora suis... [more]
A0A0L0DNU8_THETB2.140e-643.04Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
A0A7S0VGT0_9CRYP6.540e-641.43Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A0L0HC42_SPIPD9.540e-540.79Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:1979972..1981306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue1.4e-17
Seed eggNOG ortholog227086.JGI_V11_126617
EggNOG OGs2E6M4@1,2SDAD@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size884
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2204.1prot_S-ischiensis_contig11.2204.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 1979990..1980932 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.4196484-UTR-S-ischiensis_contig11:1979971..19799891622815606.4196484-UTR-S-ischiensis_contig11:1979971..1979989Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1979972..1979989 +
1695739799.4533749-UTR-S-ischiensis_contig11:1979971..19799891695739799.4533749-UTR-S-ischiensis_contig11:1979971..1979989Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1979972..1979989 +
1622815606.462243-UTR-S-ischiensis_contig11:1980932..19813061622815606.462243-UTR-S-ischiensis_contig11:1980932..1981306Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1980933..1981306 +
1695739799.4781177-UTR-S-ischiensis_contig11:1980932..19813061695739799.4781177-UTR-S-ischiensis_contig11:1980932..1981306Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1980933..1981306 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.4316368-CDS-S-ischiensis_contig11:1979989..19803091622815606.4316368-CDS-S-ischiensis_contig11:1979989..1980309Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1979990..1980309 +
1695739799.46273-CDS-S-ischiensis_contig11:1979989..19803091695739799.46273-CDS-S-ischiensis_contig11:1979989..1980309Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1979990..1980309 +
1622815606.4471803-CDS-S-ischiensis_contig11:1980760..19809321622815606.4471803-CDS-S-ischiensis_contig11:1980760..1980932Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1980761..1980932 +
1695739799.470362-CDS-S-ischiensis_contig11:1980760..19809321695739799.470362-CDS-S-ischiensis_contig11:1980760..1980932Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1980761..1980932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2204.1

>prot_S-ischiensis_contig11.2204.1 ID=prot_S-ischiensis_contig11.2204.1|Name=mRNA_S-ischiensis_contig11.2204.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=164bp
MDRDGATGAITPSAGPPAHSSVTAKKKKSLATRQSDVRQREDRSDLCKLP
PGKGNKPLQQPPAFDDHDDTRYWDYTVRMITKGDLGHTCRSCKRPFVSLR
EEIAVRRGGRIELRYHAQGCFSYQADPRTQPGSSADTGKFAARLKGTVAP
KDMYRKMRTSSHW*
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mRNA from alignment at S-ischiensis_contig11:1979972..1981306+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2204.1 ID=mRNA_S-ischiensis_contig11.2204.1|Name=mRNA_S-ischiensis_contig11.2204.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1335bp|location=Sequence derived from alignment at S-ischiensis_contig11:1979972..1981306+ (Schizocladia ischiensis KU_0333)
GACGCTACGACACATGGGATGGACCGCGACGGCGCGACCGGTGCGATCAC
ACCCTCTGCAGGGCCCCCCGCGCACAGCAGTGTCACTGCCAAAAAGAAAA
AGAGCTTGGCGACGCGGCAGTCGGATGTGCGGCAAAGGGAAGACCGAAGT
GACTTGTGCAAACTGCCCCCAGGGAAGGGCAACAAACCCCTGCAGCAGCC
GCCAGCTTTCGACGACCATGACGACACCAGATACTGGGACTATACCGTAC
GCATGATTACGAAGGGAGACCTAGGCCACACCTGTCGCAGCTGCAAAAGG
CCGTTCGTGTCTCTAAGAGAAGAGATCGCAGTACGAAGGTGAGGGAGGGG
GGGTTGAAGAACAGTCTGTACTTCGAAGAACTCGCTCAACTCTACTGTGT
AGAGCTCTAGTGAACTAGGTTTCGAACGCTGTAGTACGGGATATGTGCTC
GTATCGTGTTTGTCGTTGCCCAGAGACCTTGTGCCAAAAAATAGTGCTGT
ATCTCATAGCTGCACCATTGGTGCTTGTGCAAGCTCGCACCTGGGCGTGG
GGCCACGAATGGCATTGTGGAAAAACGTGCTCGAAGCACCGTGCAAGTCC
ACATGAAAATGTACTGTAAGGCAATTTTTGACGTGCTGACCCCGAGTCAA
GGTGAATCGCCCTCATTGGTAGGTACCCTCACGTGTGTGCATCCAGCAAA
GCGTGTGCTTCAAGCCACCCTGTAGCTGCCATTTACGCGCCCTGCAAACC
TCTCCAATGCTTGTGCAAACCTCTCCAATGCTTGTGCAGAGGCGGGAGGA
TTGAGCTGCGCTATCACGCTCAGGGTTGCTTCTCTTACCAGGCGGATCCC
CGAACACAGCCAGGCAGTTCTGCCGACACGGGAAAGTTCGCTGCCAGGCT
CAAGGGAACAGTGGCACCAAAGGACATGTACCGAAAGATGCGCACATCCT
CGCACTGGTGAACAACGTGCCTCCAGGGGCGCCAGCCGGCCAGCCCCCCC
CCGGGGCCCAACGCCTGCCAGGGGCAGGGAGTTCTGTAAGCAATGTGGTT
AGGTGTCGAGCATGTGCTGGACGTGGATTGAGACGGGCGCTCGGGAGGGA
GAGGGCGCACTGAGAGCGGGGGGAATCTGTAAGTACGCGCGAGTAATAGT
CTGTAAGTACAGTATTAACAGTAACAACAGGAGGCGAGGTGCGGGCCACG
TCACTAGAGACCTCGGCAGTGGCCCTTTCTTATAGCCCGCAAGGGGAAAG
TACAGTAGTAAGGGACCTTCCGGTGGTGCTACTCTTGTCAAGCAATGCTT
CGAGGCGTTCAACGTTTTTTATTCTGCATCGAGCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:1979972..1981306+

>mRNA_S-ischiensis_contig11.2204.1 ID=mRNA_S-ischiensis_contig11.2204.1|Name=mRNA_S-ischiensis_contig11.2204.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=984bp|location=Sequence derived from alignment at S-ischiensis_contig11:1979972..1981306+ (Schizocladia ischiensis KU_0333)
ATGGACCGCGACGGCGCGACCGGTGCGATCACACCCTCTGCAGGGCCCCC
CGCGCACAGCAGTGTCACTGCCAAAAAGAAAAAGAGCTTGGCGACGCGGC
AGTCGGATGTGCGGCAAAGGGAAGACCGAAGTGACTTGTGCAAACTGCCC
CCAGGGAAGGGCAACAAACCCCTGCAGCAGCCGCCAGCTTTCGACGACCA
TGACGACACCAGATACTGGGACTATACCGTACGCATGATTACGAAGGGAG
ACCTAGGCCACACCTGTCGCAGCTGCAAAAGGCCGTTCGTGTCTCTAAGA
GAAGAGATCGCAGTACGAAGATGGACCGCGACGGCGCGACCGGTGCGATC
ACACCCTCTGCAGGGCCCCCCGCGCACAGCAGTGTCACTGCCAAAAAGAA
AAAGAGCTTGGCGACGCGGCAGTCGGATGTGCGGCAAAGGGAAGACCGAA
GTGACTTGTGCAAACTGCCCCCAGGGAAGGGCAACAAACCCCTGCAGCAG
CCGCCAGCTTTCGACGACCATGACGACACCAGATACTGGGACTATACCGT
ACGCATGATTACGAAGGGAGACCTAGGCCACACCTGTCGCAGCTGCAAAA
GGCCGTTCGTGTCTCTAAGAGAAGAGATCGCAGTACGAAGAGGCGGGAGG
ATTGAGCTGCGCTATCACGCTCAGGGTTGCTTCTCTTACCAGGCGGATCC
CCGAACACAGCCAGGCAGTTCTGCCGACACGGGAAAGTTCGCTGCCAGGC
TCAAGGGAACAGTGGCACCAAAGGACATGTACCGAAAGATGCGCACATCC
TCGCACTGGTGAAGGCGGGAGGATTGAGCTGCGCTATCACGCTCAGGGTT
GCTTCTCTTACCAGGCGGATCCCCGAACACAGCCAGGCAGTTCTGCCGAC
ACGGGAAAGTTCGCTGCCAGGCTCAAGGGAACAGTGGCACCAAAGGACAT
GTACCGAAAGATGCGCACATCCTCGCACTGGTGA
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