mRNA_S-ischiensis_contig1.1161.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1161.1
Unique NamemRNA_S-ischiensis_contig1.1161.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7868204..7869780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size805
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1161.1prot_S-ischiensis_contig1.1161.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7868405..7869590 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815360.7841446-UTR-S-ischiensis_contig1:7868203..78684041622815360.7841446-UTR-S-ischiensis_contig1:7868203..7868404Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7868204..7868404 -
1695739659.680893-UTR-S-ischiensis_contig1:7868203..78684041695739659.680893-UTR-S-ischiensis_contig1:7868203..7868404Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7868204..7868404 -
1622815360.8597856-UTR-S-ischiensis_contig1:7869590..78697801622815360.8597856-UTR-S-ischiensis_contig1:7869590..7869780Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7869591..7869780 -
1695739659.7307446-UTR-S-ischiensis_contig1:7869590..78697801695739659.7307446-UTR-S-ischiensis_contig1:7869590..7869780Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7869591..7869780 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815360.7980711-CDS-S-ischiensis_contig1:7868404..78685701622815360.7980711-CDS-S-ischiensis_contig1:7868404..7868570Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7868405..7868570 -
1695739659.6896367-CDS-S-ischiensis_contig1:7868404..78685701695739659.6896367-CDS-S-ischiensis_contig1:7868404..7868570Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7868405..7868570 -
1622815360.8114204-CDS-S-ischiensis_contig1:7868759..78687781622815360.8114204-CDS-S-ischiensis_contig1:7868759..7868778Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7868760..7868778 -
1695739659.6983678-CDS-S-ischiensis_contig1:7868759..78687781695739659.6983678-CDS-S-ischiensis_contig1:7868759..7868778Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7868760..7868778 -
1622815360.8250487-CDS-S-ischiensis_contig1:7869214..78692691622815360.8250487-CDS-S-ischiensis_contig1:7869214..7869269Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7869215..7869269 -
1695739659.709294-CDS-S-ischiensis_contig1:7869214..78692691695739659.709294-CDS-S-ischiensis_contig1:7869214..7869269Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7869215..7869269 -
1622815360.848506-CDS-S-ischiensis_contig1:7869416..78695901622815360.848506-CDS-S-ischiensis_contig1:7869416..7869590Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7869417..7869590 -
1695739659.7213027-CDS-S-ischiensis_contig1:7869416..78695901695739659.7213027-CDS-S-ischiensis_contig1:7869416..7869590Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7869417..7869590 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1161.1

>prot_S-ischiensis_contig1.1161.1 ID=prot_S-ischiensis_contig1.1161.1|Name=mRNA_S-ischiensis_contig1.1161.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=138bp
MGCANILRAGRRAPTATPHSCGCKRVALEGCVHGVDGGRQNARDGPRDLL
QRVQQHQRLSVPAPSGHARTATGYRALLEIQNRGPPHVHASTGTKTWTWS
GAIPHGQPEGSGTPELQSDSDSGSEADADAPLAAGHK*
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mRNA from alignment at S-ischiensis_contig1:7868204..7869780-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1161.1 ID=mRNA_S-ischiensis_contig1.1161.1|Name=mRNA_S-ischiensis_contig1.1161.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1577bp|location=Sequence derived from alignment at S-ischiensis_contig1:7868204..7869780- (Schizocladia ischiensis KU_0333)
GGAGGGGCTTGCAAGGCAAGTTCAAAGTGCGACCCGGCGGTCGTGCGACC
CGGGGGGGAAGTTCGGGGTTTGGAGCGCATTGTGCGCGTGCACGGCTACT
CAAGTAGCTCCTGCGGTTCATCGGTCTCCAGGGGGGCAGACGCCCACCCT
GGAGGCGACCGTGCATCGTCGGGGGTGCGAGCTGGGCTGTATGGGCTGCG
CCAATATTCTGAGGGCCGGGAGGCGGGCACCGACGGCTACACCCCACAGT
TGCGGATGTAAACGCGTGGCCCTGGAAGGCTGCGTCCATGGGGTGGATGG
TGGGCGACAGAATGCCAGGGACGGGCCGAGGGACTTGTTGCAGCGCGTAC
AGCAGCATCAACGGGTGAGACCTCACACGCCGCTAGCCTTAGTCAGCCAT
AAGGGTTGTACCCTCCGTGCTTTTTCGCCTGACGTGTCGTGCCGTGCTGC
GCAGCCGTCTTGACGTGTCCCGGTTGCGCGTGTTGTCCCCACTCTCCGGT
GCCCACGGCAGCTGTCCGTGCCAGCACCCTCGGGGCATGCCAGGACTGCC
ACCGGTTACCGGGCCTGTTCGAAGTGGACTGGGCCCGCCACTTCGGTCAA
CTCGCACCCGGTATTCCCACATGTGACAGCCATGGCCGCCCCGTCCTGGG
AGCGCTCGTGCCCAAGTGCTGCACCCGGACGTGCCCCACCGTGTGCAGGT
GCTCAAAATCCCAAACAGGGGAGCTGTTGTGCCTGGCTTTTTTTTGGGTA
CCTCTTGCCCCCCCGATTGGCGTTCCGACAAAAAACGTGGGTGTCCGAAG
GCCTATCGGGGGAAAGAGGTACTTCGAAGTACCAAAAAGCCAGGGCCAGC
AGCTCCCCTGTTCTGGATTTCGAGCACCTGCACATGGTGGGGCACGTCCG
GGTGCATGCACTTGGCCACATAGCGGTCCCAGTACGGGGCGGCCATGACA
GCTGTGACATGGGCACAGACCGAGTGCCAGTTAACCGCGGTGGCGGGCCC
AGTGCTCGAAATCCAAAACAGGTGAGCTGCTATGCCTGGCTTTTTGGTAC
GGTTGCATCTGAGCACTGCAGTAGAGGTGTACTTCCGCAACGTTTGACCG
TAACTCTGTTCCGTTCCCATTTGGATGCACAGGGCGCATAAAGCCAACTT
CTGACACATCACACACCACCCTGCTCTGCTGCTTGCTGCAAACGTGCCAT
GTTATCTCAGGGGACCTCCGCACGTCCATGCGAGCACGGGCACCAAGACG
TGGACTTGGAGTGGTGCAATCCCCCATGGGCAGCCTGAGGGCTCGGGCAC
CCCAGAGCTGCAATCGGACTCGGATTCAGGTTCTGAGGCGGACGCTGACG
CTCCACTGGCCGCCGGGCACAAGTAGATCCAGCCCGGGCGTGCCATTCCC
ACTGAGAGTGTGAAATTTAACTATATACTACGTATGAAGTACGCACTACT
GTAGTCGGACTCGGATTCAGGTTCCGAGGCAGGCGCTGATGCTCCACTGG
CCGCCGGGCGCAAGTAGAAGCCCGGGAGTGCCAGGTCCCACTGAGAGTGT
TGAGTTTAACGATATACGAAGAGAGTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7868204..7869780-

>mRNA_S-ischiensis_contig1.1161.1 ID=mRNA_S-ischiensis_contig1.1161.1|Name=mRNA_S-ischiensis_contig1.1161.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=828bp|location=Sequence derived from alignment at S-ischiensis_contig1:7868204..7869780- (Schizocladia ischiensis KU_0333)
ATGGGCTGCGCCAATATTCTGAGGGCCGGGAGGCGGGCACCGACGGCTAC
ACCCCACAGTTGCGGATGTAAACGCGTGGCCCTGGAAGGCTGCGTCCATG
GGGTGGATGGTGGGCGACAGAATGCCAGGGACGGGCCGAGGGACTTGTTG
CAGCGCGTACAGCAGCATCAACGGATGGGCTGCGCCAATATTCTGAGGGC
CGGGAGGCGGGCACCGACGGCTACACCCCACAGTTGCGGATGTAAACGCG
TGGCCCTGGAAGGCTGCGTCCATGGGGTGGATGGTGGGCGACAGAATGCC
AGGGACGGGCCGAGGGACTTGTTGCAGCGCGTACAGCAGCATCAACGGCT
GTCCGTGCCAGCACCCTCGGGGCATGCCAGGACTGCCACCGGTTACCGGG
CCTCTGTCCGTGCCAGCACCCTCGGGGCATGCCAGGACTGCCACCGGTTA
CCGGGCCTTGCTCGAAATCCAAAACAGTGCTCGAAATCCAAAACAGGGGA
CCTCCGCACGTCCATGCGAGCACGGGCACCAAGACGTGGACTTGGAGTGG
TGCAATCCCCCATGGGCAGCCTGAGGGCTCGGGCACCCCAGAGCTGCAAT
CGGACTCGGATTCAGGTTCTGAGGCGGACGCTGACGCTCCACTGGCCGCC
GGGCACAAGTAGGGGACCTCCGCACGTCCATGCGAGCACGGGCACCAAGA
CGTGGACTTGGAGTGGTGCAATCCCCCATGGGCAGCCTGAGGGCTCGGGC
ACCCCAGAGCTGCAATCGGACTCGGATTCAGGTTCTGAGGCGGACGCTGA
CGCTCCACTGGCCGCCGGGCACAAGTAG
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