mRNA_S-ischiensis_contig1.1135.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1135.1
Unique NamemRNA_S-ischiensis_contig1.1135.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig1.1135.1 vs. uniprot
Match: D8LNZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNZ6_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 4.380e-12
Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:   37 LLRLSHERVAALKSNVRRLEGQLAEQENRLGDLDEVRKDERKARRGKEQELEWVSYELRTFRARCAQLRDEREQL 261
            + ++ HER  + +   R LE +L E E R+GDL+EVRK ERKA   KEQ+ EW+SYELR +RAR +QLRDER++L
Sbjct:  239 MAKVLHERWLSERKKARSLESRLKESEVRIGDLEEVRKHERKALADKEQDEEWLSYELRAYRARYSQLRDERDRL 313
[Close]
BLAST of mRNA_S-ischiensis_contig1.1135.1 vs. uniprot
Match: A0A6H5KW93_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW93_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 4.660e-12
Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:   37 LLRLSHERVAALKSNVRRLEGQLAEQENRLGDLDEVRKDERKARRGKEQELEWVSYELRTFRARCAQLRDEREQL 261
            + ++ HER  + +   R LE +L E E R+GDL+EVRK ERKA   KEQ+ EW+SYELR +RAR +QLRDER++L
Sbjct: 1302 MAKVLHERWLSERKKARSLESRLKESEVRIGDLEEVRKHERKALADKEQDEEWLSYELRAYRARYSQLRDERDRL 1376
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNZ6_ECTSI4.380e-1254.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW93_9PHAE4.660e-1254.67Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7739082..7740123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size483
Cds size480
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815360.5762258-CDS-S-ischiensis_contig1:7739081..77392221622815360.5762258-CDS-S-ischiensis_contig1:7739081..7739222Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7739082..7739222 +
1695739659.6065185-CDS-S-ischiensis_contig1:7739081..77392221695739659.6065185-CDS-S-ischiensis_contig1:7739081..7739222Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7739082..7739222 +
1622815360.5933895-CDS-S-ischiensis_contig1:7739782..77401211622815360.5933895-CDS-S-ischiensis_contig1:7739782..7740121Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7739783..7740121 +
1695739659.6149933-CDS-S-ischiensis_contig1:7739782..77401211695739659.6149933-CDS-S-ischiensis_contig1:7739782..7740121Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7739783..7740121 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1135.1prot_S-ischiensis_contig1.1135.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7739082..7740121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1135.1

>prot_S-ischiensis_contig1.1135.1 ID=prot_S-ischiensis_contig1.1135.1|Name=mRNA_S-ischiensis_contig1.1135.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=160bp
EDEAQSVSRYQMLLRLSHERVAALKSNVRRLEGQLAEQENRLGDLDEVRK
DERKARRGKEQELEWVSYELRTFRARCAQLRDEREQLASANQELREALKA
ALEQHPQQHPQQQQQQHGAGHDAASTGGKGLAGEGGGTMSQSLPNSPLGT
ADHGHGAQVT
back to top

mRNA from alignment at S-ischiensis_contig1:7739082..7740123+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1135.1 ID=mRNA_S-ischiensis_contig1.1135.1|Name=mRNA_S-ischiensis_contig1.1135.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1042bp|location=Sequence derived from alignment at S-ischiensis_contig1:7739082..7740123+ (Schizocladia ischiensis KU_0333)
GAAGACGAGGCCCAGAGCGTGAGCCGGTACCAGATGCTGCTGCGGCTGAG
CCACGAGCGGGTGGCGGCGCTCAAGTCGAATGTCCGGCGCCTGGAGGGGC
AGCTGGCAGAGCAGGAGAACCGCCTGGGGGACCTGGACGAGGTGCGGGAC
TTAGCCCTTTGTTGTCCTACTGTACAGAGCTTCCAAGTACCTATTTACTT
CGAAGTAGCACGTTTGCCCCCAAGCACACGTATTGAAGTCATAAACCTGC
CCGAGACCGTTGGCTACCTGCCTCCACCGAGGCGGATGGGGCACCCCTGC
CATCCCTGTGGAATATCCTCCCACACGCTTGTGCTTCAAATCAAGTCGTG
TCCCCGTTGCACTAGCTAGGTACTACAAGTATGCACCCCTCTCTCAACAC
GCCCAAAATCCCTGTACTCGTACAGCGTACATTGTACATGTATGCACATG
TATGTGCTCGTACTCGAGTAGGCCTGCGAAGAGAACCAGAAGCTGATCCC
ACACTACTTGCTACTGCTTACACTAGGTACCTACAATAACTCCTGCTTCC
CTGTCAAGTTCAGTGTGTCACCATCCCCCCTGAAGTGCCCCACGCCGAGT
TCTGCACCGCCTAGGTGTGCTTTGAAGCTTACTTCCAGGCACTGCACACG
CCGTAAATACTTACCCTCTCCCCGTCAACGCCGCGCGCACACGCCTCTCA
GGTGCGCAAGGACGAGCGCAAGGCGCGGCGCGGCAAGGAGCAGGAGCTGG
AGTGGGTGTCGTACGAGCTGCGCACCTTCCGCGCCCGCTGCGCCCAGCTG
CGCGACGAGCGTGAGCAGCTTGCCTCGGCCAATCAGGAGCTCCGCGAGGC
CCTCAAGGCTGCCCTTGAGCAGCATCCGCAGCAGCATCCGCAGCAGCAGC
AGCAGCAGCACGGGGCTGGCCACGACGCGGCAAGCACAGGCGGAAAGGGT
CTCGCCGGCGAGGGGGGGGGTACCATGTCGCAGAGCCTGCCCAACAGTCC
CCTCGGGACGGCGGATCATGGCCATGGGGCACAAGTCACGCG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig1:7739082..7740123+

>mRNA_S-ischiensis_contig1.1135.1 ID=mRNA_S-ischiensis_contig1.1135.1|Name=mRNA_S-ischiensis_contig1.1135.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=960bp|location=Sequence derived from alignment at S-ischiensis_contig1:7739082..7740123+ (Schizocladia ischiensis KU_0333)
GAAGACGAGGCCCAGAGCGTGAGCCGGTACCAGATGCTGCTGCGGCTGAG
CCACGAGCGGGTGGCGGCGCTCAAGTCGAATGTCCGGCGCCTGGAGGGGC
AGCTGGCAGAGCAGGAGAACCGCCTGGGGGACCTGGACGAGGAAGACGAG
GCCCAGAGCGTGAGCCGGTACCAGATGCTGCTGCGGCTGAGCCACGAGCG
GGTGGCGGCGCTCAAGTCGAATGTCCGGCGCCTGGAGGGGCAGCTGGCAG
AGCAGGAGAACCGCCTGGGGGACCTGGACGAGGTGCGCAAGGACGAGCGC
AAGGCGCGGCGCGGCAAGGAGCAGGAGCTGGAGTGGGTGTCGTACGAGCT
GCGCACCTTCCGCGCCCGCTGCGCCCAGCTGCGCGACGAGCGTGAGCAGC
TTGCCTCGGCCAATCAGGAGCTCCGCGAGGCCCTCAAGGCTGCCCTTGAG
CAGCATCCGCAGCAGCATCCGCAGCAGCAGCAGCAGCAGCACGGGGCTGG
CCACGACGCGGCAAGCACAGGCGGAAAGGGTCTCGCCGGCGAGGGGGGGG
GTACCATGTCGCAGAGCCTGCCCAACAGTCCCCTCGGGACGGCGGATCAT
GGCCATGGGGCACAAGTCACGGTGCGCAAGGACGAGCGCAAGGCGCGGCG
CGGCAAGGAGCAGGAGCTGGAGTGGGTGTCGTACGAGCTGCGCACCTTCC
GCGCCCGCTGCGCCCAGCTGCGCGACGAGCGTGAGCAGCTTGCCTCGGCC
AATCAGGAGCTCCGCGAGGCCCTCAAGGCTGCCCTTGAGCAGCATCCGCA
GCAGCATCCGCAGCAGCAGCAGCAGCAGCACGGGGCTGGCCACGACGCGG
CAAGCACAGGCGGAAAGGGTCTCGCCGGCGAGGGGGGGGGTACCATGTCG
CAGAGCCTGCCCAACAGTCCCCTCGGGACGGCGGATCATGGCCATGGGGC
ACAAGTCACG
back to top