mRNA_S-ischiensis_contig11.2003.1 (mRNA) Schizocladia ischiensis KU_0333
|
Overview
Homology
BLAST of mRNA_S-ischiensis_contig11.2003.1 vs. uniprot
Match: A0A6H5L0C5_9PHAE (VASt domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L0C5_9PHAE) HSP 1 Score: 536 bits (1381), Expect = 3.970e-157 Identity = 596/1803 (33.06%), Postives = 829/1803 (45.98%), Query Frame = 1
Query: 1 ALLKAVKRTSTSVAGLLLPDGAGWGTASPASAAGGGGAGAQLLWAPTLSREGWGGLLAAVQSWGKQHVGWALCIDQNITKASWEAPRFFTLGEFAGKHRSHVKRLGAEAEELVSEMASVQDAYYRTKATYETTCMEASRRAYARNKAREAAAXXXXXXXXXXXXXXXXXXRS---LEHKDQAVGEGVAAAVGNVGNKAHGLGLAMGEVAAADMDEKVSEVVRRVDVSEQEYISAIMAVNSYAAEFQPEMEAKLNQFQLVEESRVMFVRDVLLRLQQADAGMLHQLLHPPTGTLPQLAQAVGRVDPIADARALSAHVRAAAGLLLLAPPXXXXXXGKGEAAAGAAGATDKGVAGGTGGAGAGAEVAEPPLDELAAELK--EEALRMAVDGGREWLGDAARVLQGMSSFLADVVSAQDAHSKGLHRLLEKHGYADHTNASAGMG------------NSLSGGGVVSGEGATLRAGWEAAALVPVAAAWRAHTLLAQRLGDGLCSLLGRAQESARKACKQAAKLHASEVKRLGAAKAAHSKAISRYDRLSREELEREDSLARARAELDGARQRSSSRSLLGRV--LPVRHGSPTRGGSXXXXXXXXXXXXXXXXXXXG--RRESPGALNDMLETLGLSQGLGDAARLRLLEGRVTAARHDLDAAKRGLEGTVAGVEASLLEYRQVSTVVWCCTIALIRQSESLQTSTETVLH--LEVPVCAVRALSAGHAQALA--RVKAVDGRRDVEEFANQALVNLQVPTLLPLSVPGGGQQVMFLAYHSKVLERERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHHAREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSDGDRRHRHARHPSGTG----SDDAAALSDSELGRLSVSQHGG-GSWHXXXXXXXXXXXXXXXXXGGSXXXXXXXXXXXXXXXSRHGSSASVAXXXXXXXXXX----------TPARRRRGSATAGGAEGGEGVPAL---PVRALAGGGRVEKGAGRPSLRSLQHLSRRRGGDFSESDEVSICSV----RSTLVC----SVSTEAPPY-IHSS-----TTLAQRSWVHDGSLR--------------------VVGFRNIVLRRMTVWPTTSRPLR-VKLTRVRACMRAALAVPCLSSRREQHTTPALPWVRRHQEDQGGLDDLD-VDWGVSEGEEGDA----------------PTEE-------TGVGGELHSGRGG-VGSSPL--RRRASRNRRAKKGAEEGRGGEPGHRAGRGA----------------GXXXXXXXXXXXXXXXXXXXGAGDSGGLSPDHA-------LLERFDLPPEALREKVIESFSCALYSGGLPLHGRLSVTPNYGLFAGWRSTKVVLPLADVKAVEKASTMLIVPNALILTRRWDGEKLTFGSFLYRDDCCALLSKLLLINRKLTELTSPRRRGGGSAPTKRGASPLGPGGAPGAAATEEQADLDVP-PDEGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGVLDAELACSVAQAFEWFWGHRTHFWQEFMVAQGEASLSCSRW---SILNGGGGGASDLFAGETFSHVREVSFVHPRTSLVGECPKKVLTRQRQAYRLRRRGQNAWAGLGKPPLDSAVVCQTTQMEKGAPMADHFTILGRVVMSRLPPTPTAAVTEGLMPKCRVRVCLQVVFHKSTILKHNIRSAASEETSHTWKAWLAAVQACVAFQHRRLGPATASHGRGLCPPSSLLRLATD 5013
AL+KA KR S P G WG A+ A A +WAP+L +EGW G++A++ SWGKQHVGWA C++QNI K TL EF+ KHR HV RL EA++LV ++ +V YYR K YE C++ASR R++AR+ AA L + +GEG+A A + +A GE++ +++ KV E + VDV+E EYI++IMA+N Y EFQPEME KL QFQL+EE R+ ++++VLLRL QA GML L+ P GTL L+ A+ R+DP++DA A ++VR AG+ L+P G D+G A EVA+ A LK E+ + G R+ +A R++Q + FL ++VS ++ H++ + RLLE+ GY A M +SL+ GV++GEG TL+ GW+++A+ + AHT LA L DG C+ +A A+ + K+A K ++ K+L +K+ H+KA+S+ D+L+RE E+E+SLA+AR +L Q S S +G+ LP + + RG S G RR+ P +LE+LGL Q G R++ LE +V A + DAAK+ ++ + G +A+L E R V TI L+ + S Q +LH L V + + L A +A + +A+DG++DV+E + +QVPT G VMF+AYHS+VL++ER + AR+ + RRHR G S+ + D R S HG XXXXXXXXXXXXXXXXX XXXXXXXXXXX SRH S+ S+ P ++ G G G L PV A G+ R+ + GG + E + V S +V S T APP + +S T + +S V G + IV P P++ KL + A +A + + +E + P + GGLD + ++ E E PTEE T + GE G +GSS L R AS + A K P R + XXXXXXXXXXXXXXXX + + G+S A +L+ FD+P E L++KVIESFSC LYSGGLPLHGRL VT Y LF+GWR+TKVV+ L+ V VEK ST+ VPNAL L +R GEK+T GSFL+RDDC ALL +L+ ++ ++ + G S T GA PL ++ E DL P P E + +++A L C+ AQ F W WG T FW +F+ AQGE L+ + W ++ + G G DLF GE F RE++F HPRT V PKKVLTRQ Q YR+ RR W G + P+D V+CQTT ME+GAP+ADHFT+LG+V++SR PP + P+CRV + V FH+ST+L+ IRS A EET ++WK+WLAA + V +Q +LG A+ G PP + LA D
Sbjct: 47 ALIKAAKRASKGAR----PGGNAWGHAT---------ATAPPVWAPSLVQEGWAGIVASINSWGKQHVGWARCVEQNIAK---------TLTEFSKKHRGHVARLCTEAQDLVRDLEAVGGEYYRAKGAYEEACIQASRLLDERDRARQVAAEEAAHMQPPASRTKPAEAAGGSMLSSVSKMLGEGMAIAEKMLEK------VAAGELSLVELEAKVPEQLHVVDVAESEYIASIMALNGYNTEFQPEMEGKLKQFQLLEECRIAYIKEVLLRLDQASKGMLTCLIGPG-GTLEALSIALTRIDPLSDAEAQLSYVRENAGMPPLSPMSEFSNTSSSMGDENREGMPDRGKRA----VRAPEEVAQAREATGLAVLKLPEDGVEKMFHGARDEANEAVRMVQEICCFLGELVSVEENHTREVLRLLERQGYGSRVGARGTMSLMEDVMANMSKPSSLACAGVIAGEGHTLKQGWDSSAVGKALVSAEAHTGLAHSLADGSCTAAIQAHNEAKASVKRAIKTFSAAWKQLSTSKSTHAKAVSKCDKLTREVHEKEESLAKARVDLTAELQASGG-SCIGQEQSLPPDNSTGPRGHSSGTGPSLDLFGEDSSAKGIGGVRRDGPW----VLESLGLQQHAG--GRVKALEVKVAALAEERDAAKQNVQDAIHGTKAALEELRLK---VKDTTIGLLTEDSSRQARLSELLHGVLSVYLETTKVLVAEQTRADEGKQTQAIDGQKDVQELVERNAHRVQVPT---------GHGVMFMAYHSEVLQKERDMLRKHRLSSPRSAERHGLEGETSGNNASGVRRAGGGSHRFTAMAEAALAQAHAKQQRRQIIARQEGTGRENGGATSGVGGWNAAARAFSASLTDGEEGPISLSRQRQVLRDHRRHRRKIRAPENGESCFSESEVVVCDDNASRHGGSLHGNLRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKSYSRHSSAISLRAHSKNANSPRQGQETKDVGNAPVAVSVSTSGLGSPRVGTGDRVLSSPPVEDAA-----HSGSASDVPRAKAERAPESGGGKLDPTEGEVTDVPNGNNSAIVSGDGRSGGTPAPPSPVEASVDPTETPPSAKSGVAGGVMEPETIYIHGQKAPGVTAAVATTADLHPIVKAESETEPPPGAPVKEAKL----GILSADVAKAAVLAGQEIQSEPDGVVLT------GGLDQVARIERSRVEAEVSPTXXXXXXXXXXXXXXVVPTEESAPSCRATAIAGEERGRLGSPIGSSSLVHPRDASEEQMAAKEESPRSERRPSLRHLKNRLREQDDFSXXXXXXXXXXXXXXXXXXXXXXXXXFYRESSATAGISASTAQASDELNVLDSFDIPKEDLQDKVIESFSCGLYSGGLPLHGRLYVTGKYALFSGWRNTKVVVLLSGVVRVEKTSTLRFVPNALTLVKR-GGEKVTLGSFLFRDDCHALLLRLVKVSGSISLMH------GVSPGTPTGALPLD------GSSDELPEDLLEPEPSE------------------TAPGTAISRALAVAGRPDDSKFETMVEAVLPCTTAQVFAWLWGRDTKFWADFLRAQGETGLTITPWGKTAVHSEAGRGLRDLFPGEAFDEQRELTFTHPRTGFV-VGPKKVLTRQVQGYRVERRED--WTG-SRRPMDRVVLCQTTMMERGAPLADHFTLLGKVILSRDPPG------QDQEPRCRVCIGFDVAFHRSTMLRGAIRSGAQEETRNSWKSWLAASKKVVMYQRHQLGRTAANDGVAAKPPEGIFALAED 1741
BLAST of mRNA_S-ischiensis_contig11.2003.1 vs. uniprot
Match: F0WS00_9STRA (Uncharacterized protein AlNc14C222G9142 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WS00_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 2.930e-13 Identity = 94/388 (24.23%), Postives = 156/388 (40.21%), Query Frame = 1
Query: 3730 ERFDLPPEALREKVIESFSCALYSGGLPLHGRLSVTPNYGLFAGWRSTKVVLPLADVKAVEKASTMLIVPNALILTRRWDGEKLTFGSFLYRDDCCALLSKLLLINRKLTELTSPRRRGGGSAPTKRGASPLGPGGAPGAAATEEQADLDVPPDEGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGVLDAELACSVAQAFEWFWGHRTHFWQEFMVAQGEASLSCSRWSILNGG------GGGASDLFAGETFSHVREVSFVHPRTSLVGECPKKVLTRQRQAYRLRRRGQNAWAGLGKPPLDSAVVCQTTQMEKGAPMADHFTILGRVVMSRLPPTPTAAVTEGLMPKCRVRVCLQVVFHKSTILKHNIRSAASEE 4875
+RF L A E+V++S+SCALY G P HGR+ +T ++ F+GWR V+ D+K++EK +T +IVPNA+ + + D +K F SF++RD+C + L I G +A G +P ++ + E D +P E +L+ +L S+ W + F+ ++ E+S++ W N G A E F R V+++H + ++G P + T Q +R+R W D ++ T + P D+F + R V LP T +RV ++V ++KST LK I ++ E
Sbjct: 773 KRFHL---AAPEQVLDSYSCALYLGNFPCHGRMYLTKDHICFSGWRDAHYVISYLDIKSLEKKNTAIIVPNAIEIFTKND-QKAFFASFVFRDECFNHIQLLYTITT------------GTAAVMAEGYTP--------SSGSREMQDQMLPDKE-------KCKPPSDVTSTAQTLSETRDAGPLEPDALMDDYKTILERKLFVSLEFVHSTLWVKESDFYNRALIEANESSINIGEWKHGNHPYLAPFRDGNAEP----EIFQATRTVTYLHNKKYIIG--PSSIPTIQ--IHRVR------WVP------DKRLILSITSNVESVPYHDYFQVEKRWVYDNLPNNVTF-----------MRVGVRVYWYKSTWLKKQIEASVLSE 1098
BLAST of mRNA_S-ischiensis_contig11.2003.1 vs. uniprot
Match: A0A024GKZ6_9STRA (VASt domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GKZ6_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 5.930e-13 Identity = 41/95 (43.16%), Postives = 64/95 (67.37%), Query Frame = 1
Query: 3730 ERFDLPPEALREKVIESFSCALYSGGLPLHGRLSVTPNYGLFAGWRSTKVVLPLADVKAVEKASTMLIVPNALILTRRWDGEKLTFGSFLYRDDC 4014
+RF L A E+V++S+SCALY G P HGR+ +T ++ F+GWR V+ ++K+VEK +T +IVPNA+ + + D +K F SF++RD+C
Sbjct: 1612 KRFHL---AAPEQVLDSYSCALYLGNFPCHGRMYLTKDHICFSGWRDAHFVISYLEIKSVEKKNTAIIVPNAIEIFTK-DDQKAFFASFVFRDEC 1702
BLAST of mRNA_S-ischiensis_contig11.2003.1 vs. uniprot
Match: A0A4D9CXX0_9STRA (VASt domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXX0_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 7.240e-9 Identity = 60/212 (28.30%), Postives = 95/212 (44.81%), Query Frame = 1
Query: 4327 DAELACSVAQAFEWFWGHRTH-------------FWQEFMVAQGEASLSCSRWSILNGGGGGASDLFAGETFSHVREVSFVHPRTSLVGECPKKVLTRQRQAYRLRRRGQNAWAGLGKPPLDSAVVCQTTQMEKGAPMADHFTILGRVVMSRLPPTPTAAVTEGLMPKCRVRVCLQVVFHKSTILKHNIRSAASEETSHTWKAWLAAVQACV 4923
D ELAC V++ FWG F+Q ++ A+G+ + W G D ++GE+F HVR+V + R G PK V TR+ Q YR+ G+ + V T G P ++F + R V++R+ G +CR+++ ++VVF ++ LK I++A ET T + WLA +A V
Sbjct: 1480 DEELACGVSKFLASFWGAGREGXXXXXXXXXXGDFYQSYLEARGDNEVRVGGWE-----GREEQDAYSGESFVHVRDVFYSRVRDGR-GIGPKTVPTRECQMYRVE--GEGGGXXXXXXREEDRVFLSTALTFTGVPYGEYFHVQTRWVVTRVG-------VHG--DRCRLQIGVEVVFRQTVFLKAAIQAATIAETKKTLQDWLARAKARV 1674
BLAST of mRNA_S-ischiensis_contig11.2003.1 vs. uniprot
Match: A0A8C9RVE9_SCLFO (GRAM domain-containing protein n=5 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9RVE9_SCLFO) HSP 1 Score: 69.3 bits (168), Expect = 2.460e-8 Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = 1
Query: 3763 EKVIESFSCALYSGGLPLHGRLSVTPNYGLFAG---WRSTKVVLPLADVKAVEKASTMLIVPNALILTRRWDGEKLTFGSFLYRDDCCALLSKLLLINRKLTELTSPR 4077
E++ SF+CAL L HG+L V+ NY F + TKVV+P+A+V+AV+K +T L+VPNAL + R DGEK F S R+ C LL + L + +SP+
Sbjct: 136 EELTHSFTCALQKEVL-YHGKLYVSENYLCFHSSVLLKETKVVVPVANVRAVKKQNTALVVPNALSV-RTADGEKYLFTSLRNRESCYKLLCSVCLHVEDRSANSSPQ 241
BLAST of mRNA_S-ischiensis_contig11.2003.1 vs. uniprot
Match: A0A8C9W3K0_SCLFO (GRAM domain-containing protein n=4 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9W3K0_SCLFO) HSP 1 Score: 69.3 bits (168), Expect = 3.870e-8 Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = 1
Query: 3763 EKVIESFSCALYSGGLPLHGRLSVTPNYGLFAG---WRSTKVVLPLADVKAVEKASTMLIVPNALILTRRWDGEKLTFGSFLYRDDCCALLSKLLLINRKLTELTSPR 4077
E++ SF+CAL L HG+L V+ NY F + TKVV+P+A+V+AV+K +T L+VPNAL + R DGEK F S R+ C LL + L + +SP+
Sbjct: 235 EELTHSFTCALQKEVL-YHGKLYVSENYLCFHSSVLLKETKVVVPVANVRAVKKQNTALVVPNALSV-RTADGEKYLFTSLRNRESCYKLLCSVCLHVEDRSANSSPQ 340
BLAST of mRNA_S-ischiensis_contig11.2003.1 vs. uniprot
Match: A0A0N8JYM2_SCLFO (GRAM domain-containing protein (Fragment) n=1 Tax=Scleropages formosus TaxID=113540 RepID=A0A0N8JYM2_SCLFO) HSP 1 Score: 61.6 bits (148), Expect = 1.480e-6 Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 1
Query: 3817 HGRLSVTPNYGLFAG---WRSTKVVLPLADVKAVEKASTMLIVPNALILTRRWDGEKLTFGSFLYRDDCCALLSKLLLINRKLTELTSPR 4077
HG+L V+ NY F + TKVV+P+A+V+AV+K +T L+VPNAL + R DGEK F S R+ C LL + L + +SP+
Sbjct: 7 HGKLYVSENYLCFHSSVLLKETKVVVPVANVRAVKKQNTALVVPNALSV-RTADGEKYLFTSLRNRESCYKLLCSVCLHVEDRSANSSPQ 95
BLAST of mRNA_S-ischiensis_contig11.2003.1 vs. uniprot
Match: A0A0L0DSE8_THETB (VASt domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DSE8_THETB) HSP 1 Score: 61.6 bits (148), Expect = 1.490e-5 Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = 1
Query: 3730 ERFDLPPEALREKVIESFSCALYSGGLPLHGRLSVTPNYGLFA----GWRSTKVVLPLADVKAVEKASTMLIVPNAL-ILTRRWDGEKLTFGSFLYRDDCCALLSKL 4035
E+F+LP E++I+ ++CA L +HGR+ V+ NY F GW T V++P A++ A+EK + L+ PNA+ I TRR D K F SF+ RD L+ L
Sbjct: 49 EQFNLPTS---EQLIQDYTCAFQRDVL-VHGRMYVSQNYVSFCATVFGW-VTLVIIPFAEIVAIEKRNAALVFPNAIAIRTRRKD--KYFFASFIVRDSAFRTLTFL 148 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig11.2003.1 >prot_S-ischiensis_contig11.2003.1 ID=prot_S-ischiensis_contig11.2003.1|Name=mRNA_S-ischiensis_contig11.2003.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=1690bp ALLKAVKRTSTSVAGLLLPDGAGWGTASPASAAGGGGAGAQLLWAPTLSRback to top mRNA from alignment at S-ischiensis_contig11:344528..372179- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig11.2003.1 ID=mRNA_S-ischiensis_contig11.2003.1|Name=mRNA_S-ischiensis_contig11.2003.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=27652bp|location=Sequence derived from alignment at S-ischiensis_contig11:344528..372179- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig11:344528..372179- >mRNA_S-ischiensis_contig11.2003.1 ID=mRNA_S-ischiensis_contig11.2003.1|Name=mRNA_S-ischiensis_contig11.2003.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=10140bp|location=Sequence derived from alignment at S-ischiensis_contig11:344528..372179- (Schizocladia ischiensis KU_0333)back to top |