mRNA_S-ischiensis_contig11.1989.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.1989.1
Unique NamemRNA_S-ischiensis_contig11.1989.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig11.1989.1 vs. uniprot
Match: A0A835YGY0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGY0_9STRA)

HSP 1 Score: 256 bits (653), Expect = 9.340e-72
Identity = 168/431 (38.98%), Postives = 235/431 (54.52%), Query Frame = 3
Query:  105 AQAAELNYLAGTC--PDTYDENEDYFPDKAYPEYAETFTVEYFNSYKIVAESNTGKNYVLYQCGTDMPNITDIEVEEYISVPVTKVAVGYTTTVPRLELLGELESVVAWTTDDSLLSSACLTELISTEETALAFYNDPNCSYIWSTERINNTQLAALGVEVSFSGGELTDS----CNDTSTED-LLHAVITQDYLETGGEYTALERAEWIKFFSYFYNQEATANAKFGEIESLLMCTSGNAEACSLELEDVPSVAWVSYYYNKSYNAPSTEVYYDYAITQAGGTMVTCDKTD----LFYPDNQMTSDEMVECFGDADVCVFAVDYTTVDDPDA--LAQLKCVQNERVYDNVLAGTNAWFEGSIAEPQVVLEDLVVALHGDDFDYGLGDYERKLLRDVFTEDVGSGTFYNEGSCADTSAER-ELTDTCIDVI 1355
            ++ A  N L G C     YD   DYFPDK    YA+ FTV Y  +YK V   N G  YVLYQCGT  P +    V+   +VP+T++A+G TT + R+E LGE  S+VA+ TD + +SS CL  +++   TA AF  +   +Y W     +N  L A GV V+F+G  L  S    C    T D L HAV+  D  +   +  AL +AEWIKF + FYN+EA ANA F  + S   CT+ NA  CS E+   PSV++   YY   +N    + YY  +I  AGGT V C+ T       +    ++++  VEC   ADVC+F   + T+    A  L QL CV N+RVYD    G   WFE  ++ P V+LED V+A+H D+  +G+G ++R  LRDVFTE +      + G+C + +A      + C+ V+
Sbjct:   17 SRVAAANLLDGQCVAAGDYDAATDYFPDKVAVNYAKQFTVTYHKNYKTVTNLNAGLTYVLYQCGTPDPALA---VDGTFAVPITRLALGDTTWINRIEQLGERTSIVAFGTDPAYVSSPCLKVMLADNMTADAFNQN---TYCW-----DNAALEAAGVNVTFNGDALNSSPRKVCGSDPTSDPLYHAVVFSDTADAAED--ALGQAEWIKFAALFYNREAQANAVFNGMASRYGCTAANAVTCS-EVLPPPSVSYSPGYYQGGWNPNDADAYYAVSIDAAGGTFVLCNDTSGGVSTSFGTPFVSNETFVECNKAADVCIFGTCWDTIYPAQAAWLDQLACVTNKRVYDTCGNGDKDWFESRVSNPDVLLEDFVMAIHNDNTLFGIGAHQRVWLRDVFTETIPP----DAGACPNVTAPVVSAANECVSVL 429          
BLAST of mRNA_S-ischiensis_contig11.1989.1 vs. uniprot
Match: A0A6H5JRG5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRG5_9PHAE)

HSP 1 Score: 255 bits (652), Expect = 3.400e-71
Identity = 149/349 (42.69%), Postives = 205/349 (58.74%), Query Frame = 3
Query:  327 EYISVPVTKVAVGYTTTVPRLELLGELESVVAWTTDDSLLSSACLTELISTEETALAFYNDPNCSYIWSTERINNTQLAALGVEVSFSGGELTDSCNDTSTEDLLHAVITQDYLETGGEYTALERAEWIKFFSYFYNQEATANAKFGEIESLLMCTSGNAEACSLELEDVPSVAWV--------SYYYN--KSYNAPSTEVYYDYAITQAGGTMVTCDKTDLFYPDNQMTSDEMVECFGDADVCVFAVDYTTVD---DPDALAQLKCVQNERVYDNVLAGTNAWFEGSIAEPQVVLEDLVVALHGDDFDYGLGDYERKLLRDVFTEDVGSGTFYNE-GSCADTSAEREL 1331
            +YIS+PV+ V+ G T  VPR+ELLG  +S+VA+T +  L+ S C+ EL+       A   D  C      + I+N  L    VEV+F G  LT S  + +T  ++H  +     +  GE   L RAE IK FS FYN+EA AN  F EIE++  CT  NA+ CSLEL++ P+VAW         S YY     +  P+ + YY  A+   GGTM+ C   +       MT +EM+ CF DAD+CVFA DY  V+   D D L+QL+C+QN+  YD  L+G NAWFE    EP V+++D+V  LHGDD + G+G+YER LLR+VFTE    G++Y++ G+C D  A  EL
Sbjct:  124 QYISIPVSNVSTGTTDHVPRIELLGHRDSIVAYTGNVGLIGSPCVDELVDNGTVVQALTFDTVCGQ----DIIDNEALVNASVEVAF-GDSLTTSLCENAT--MVHNGVAVVAYQESGEAVGLGRAEAIKLFSLFYNEEARANELFDEIETVWFCTKTNAQGCSLELDESPTVAWFPFLPTDQDSLYYEAGSGWGEPTLDSYYGQAVNDTGGTMLDCGVVE-----GLMTDEEMLACFADADICVFAADYGEVELFFDADVLSQLRCIQNQTAYDVTLSGINAWFEAIWVEPHVLMQDMVAVLHGDDDNVGIGEYERLLLRNVFTEQNDVGSYYSDVGTCDDPDAILEL 460          
BLAST of mRNA_S-ischiensis_contig11.1989.1 vs. uniprot
Match: A0A7S2WNL6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WNL6_9STRA)

HSP 1 Score: 134 bits (336), Expect = 2.710e-29
Identity = 125/405 (30.86%), Postives = 188/405 (46.42%), Query Frame = 3
Query:  165 EDYFPDKAYPEYAETFTVEYFNSYKIVAESNTGKNYVLYQCGTDMP-NITDIEVEEYISVPVTKVAVGYTTTVPRLELLGELESVVAWTTDDSLLSSACLTELISTEETALAFYNDPNCSYIWSTERINNTQLAALGVEVSFSGGELTDSCNDTSTEDLLHAVITQDYLETGGEYTALERAEWIKFFSYFYNQEATANAKFGEIESLLMCTSGNAEACSLELEDVPSVAWVSYYYNKS---YNAPSTEVYYDYAITQAGGTMVTCDKTDLF----YPDNQMTSDEMVECFGDADVCVFAV---DYTTVDDPDALAQLKCVQNERVYDNVLAGTNAWFEGSIAEPQVVLEDLVVALHGDDFDYGLGDYERKLLRDVFTEDVGSGTFYNEGSCADTSAERE-LTDTC 1343
            +D+F DK    YA  F V Y N++KIV      +  VLY  GT  P N++ +++  ++ VPVT+VAV  TT +P +E+LG+  ++ A+T+  + +SS CL EL +  +   A          WS   I+N  LAA  V V+F+           S   L  A++T        E + L+ AE++ +FS FYN EA A      IE    CT+ N  A ++       V W    ++ +   ++  +   YY   +  AGG ++  + T       YP   +   E +     ADV V++     +      + L Q+  V   RV D +  G N WFE   AEP V+LEDL   +     D    D+ R  LRD F+E   SG      +C + S  +E L DTC
Sbjct:   29 DDFFQDKLRVRYAVHFNVTYHNTFKIVTNDYADETIVLYARGTQPPSNLSGVDM--FVEVPVTRVAVTSTTFIPWIEMLGKRTTIKAYTSSFTYVSSPCLNELYAQGKVVEAASG-------WS---IDNAALAAQNVSVTFADA--------WSRHALSSAIVTSP-----NEDSVLKTAEYVGYFSLFYNAEADAERILDGIEERYECTAANV-AQAVTGGARTQVLWAYLSFDGTTYGWSIGTCPNYYCETVWDAGGKVLETNTTGSSSVWGYP--ALNDTEFLAVATAADVFVYSAGNFSWAYSAKQEVLDQVPAVAARRVVDTLGRGENDWFESREAEPDVLLEDLTAVITPAAID----DHTRVWLRDPFSE--ASGAVNQNQTCQNASYAKEPLADTC 399          
BLAST of mRNA_S-ischiensis_contig11.1989.1 vs. uniprot
Match: A0A7S2VDN4_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VDN4_9STRA)

HSP 1 Score: 120 bits (302), Expect = 5.190e-25
Identity = 114/412 (27.67%), Postives = 175/412 (42.48%), Query Frame = 3
Query:  135 GTCPDTYDENEDYFPDKAYPEYAETFTVEYFNSYKIVAESNTGKNYVLYQCGTDMP-NITDIEVEEYISVPVTKVAVGYTTTVPRLELLGELESVVAWTTDDSLLSSACLTELISTEETALAFYNDPNCSYIWSTERINNTQLAALGVEVSFSGGELTDSCNDTSTEDLLHAVITQDYLETGGEYTALERAEWIKFFSYFYNQEATANAKFGEIESLLMCTSGNAEACSLELEDVPSVAWVSYY-YNKSYNAPSTEVYYDYAITQAGGTMVTCDKTDLFYPDNQ-----MTSDEMVECFGDADVCVFAVDYTTVDDP---DALAQLKCVQNERVYDNVLAGTNAWFEGSIAEPQVVLEDLVVALHGDDFDYGLGDYERKLLRDVFTEDVGSGTFYNEGSCADTSAERELTDT 1340
            G   D  +  +DYFP K  P ++E +++EYF++YKIV  +   + Y+LYQCGT++P ++   +    +SVPV  V +  TT +  +E L   + + A+ TD   + S C    +     AL    +        T  +      A+   ++F+G            + L    + +  +    E T     EW+KFFS F+NQE  AN  F   E    C   +A A   + E  P++ W  Y  Y K ++    + YY          +++  +       N      MT++E V    DAD          V      D LAQ K V N++VYD    G NAWFE  +A    V +D+   + G   + GL    R   R+V TE V       +  C   +A   L DT
Sbjct:   50 GCLTDAVETGKDYFPHKVEPSHSEHWSIEYFDTYKIVQNTILDETYLLYQCGTELPASLNTADYNAVLSVPVENVGLTQTTDLTFMEQLNNRDKIRAFLTDPQYIWSPCFAADVEQGTIALLETREDG------TPSLVGQNPPAVADMMAFAG----------KWDSLAFEQVVK--VSENEEKTNAAIFEWVKFFSVFFNQEELANQVFDAAEYRFQCIKKSAAAAVSDAEK-PTLLWGRYSDYCKGWDVGECDNYYCEFADVCNVNILSSSEGSNTNASNLCGGPFMTTEEFVAFGKDADYWFIPDTTWNVSQTLFGDELAQFKSVMNQQVYDYQGQGQNAWFERRLATYYDVADDMCSVV-GSRQESGLQLERRTFWRNVMTETVPPDGA--DAECTVAAAANILADT 439          
BLAST of mRNA_S-ischiensis_contig11.1989.1 vs. uniprot
Match: A0A7R9U9N4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9N4_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.100e-24
Identity = 92/257 (35.80%), Postives = 125/257 (48.64%), Query Frame = 3
Query:  108 QAAELNYLAGTC--PDTYDENEDYFPDKAYPEYAETFTVEYFNSYKIVAESNTG--KNYVLYQCGTDMPNITDIEVEEYISVPVTKVAVGYTTTVPRLELLGELESVVAWTTDDSLLSSACLTELISTEETALAFYNDPNCSYIWSTERINNTQLAALGVEVSFSGGELTDSCNDTSTEDLLH--AVITQDYLETGGEYTALERAEWIKFFSYFYNQEATANAKFGEIESLLMCTSGNAEACSLELEDVPSVAWVSY 860
            QA   N + G+C     YD + DYFPDK   ++A  F V Y NSYK+V  +  G  + +VLYQCGT +PN+ D   ++Y SVP+TK  V  TT +P +E LGE  ++  W T      S C   L+ + E   A  N  N +Y         T   A+G E+ F            + E  LH  AV   +YLE     + L   EWI+F S FYN+EA ANA F  ++    C    A+       +  SVAWV +
Sbjct:    1 QAQAGNLVDGSCVADGQYDGSVDYFPDKILVDFATHFEVTYNNSYKVVEVTAPGNEQKFVLYQCGTPVPNVPD--ADKYFSVPITKSVVAVTTLLPWIEQLGERATIAGWGTVAPY--SPCTASLLRSGEIVDAA-NGFNTNY---------TTAEAIGAEIVFES---------FTPEGGLHPLAVAVTEYLEN----SVLTTGEWIEFMSLFYNKEAEANAIFTTMKETYECHERRADFFQ---GNNYSVAWVEW 227          
BLAST of mRNA_S-ischiensis_contig11.1989.1 vs. uniprot
Match: A0A2R5FZI0_9STRA (ABC-type enterochelin transport system, periplasmic component n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FZI0_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.650e-24
Identity = 118/447 (26.40%), Postives = 189/447 (42.28%), Query Frame = 3
Query:   75 LFVIAHRLGGAQAAELNYLAGTCPDTYDENEDYFPDKAYPEYAETFTVEYFNSYKIVAESNTGKNYVLYQCGTDMPNITDIEVEEYISVPVTKVAVGYTTTVPRLELLGELESVVAWTTDDSLLSSACLTELISTEETALAFYNDPNCSYIWSTERINNTQLAALGVEVSFSGGELTDSCNDTSTEDLLHAVITQDYLETGGEYTALERAEWIKFFSYFYNQEATANAKFGEIESLLMCTSGNAEAC-------SLELEDVPSVAWVSYYYNKSYNAPSTEVYYDYAITQAGGT----MVTCDKTDLFYPD----------NQMTSDEMVECFGDADVCVFAVDYTTVDDPDALAQLK---------CVQNERVYDNVLA--GTNAWFEGSIAEPQVVLEDLVVALHGDDFDYGLGDYERKLLRDVFTEDVGSGTFYNEGSCADTSA 1319
            + V+   +  AQ    +       D+YDEN DYFP+K  P   E ++VEYFNSYK V +S TG    LY CGT  P++   E    IS+PV +V+   +T     ELL + +++  + +    ++  C+ +  + +   L   N  N                A  V+V F       S  D S+E  +  ++ +    +    T L  AEWIKFFS F+N+E  AN  +  I++   C++  A A        + +++   S  W +       +  ++ +   YAI + G      M+    T  F  D          N +T   ++E   DADV +F   + ++       ++K            N   Y  +++  G  +WFEG   +P + L DL+  L+ D     L DYER  LR     D    T  +   C D +A
Sbjct:   36 VLVVLGDMANAQYYSTSTTRACVCDSYDENVDYFPNKVEPSSDEGWSVEYFNSYKKVTDS-TGNVTYLYLCGTPEPDVGSDEGAAVISIPVQRVSTSSSTNFAYFELLNQRDNLALYESYFGYVTGGCMIQAFA-DGLMLDLTNSAN----------------AAPVDVRFL------SAYDASSE--VPVIVAKATSAS----TPLLGAEWIKFFSLFFNREEAANDIYSRIDARYECSAAEAAAAPETPVLAAFQIDATGS--WSTAVDEDCTDLDNSTIVSSYAIREEGTIDYELMIDAGATMAFTLDTLTAANGGNSNNITLGMILEAAADADVILFESTFYSMKSDGCREKVKELFEQTAAGAAGNVYDYGKLISSDGGTSWFEGKSTQPDIALRDLISILYPD----LLTDYERVYLRKAMGSDEEDETIASASDCEDVNA 446          
BLAST of mRNA_S-ischiensis_contig11.1989.1 vs. uniprot
Match: A0A1D1ZAA1_9ARAE (Uncharacterized protein MJ0642 (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1ZAA1_9ARAE)

HSP 1 Score: 114 bits (285), Expect = 6.240e-23
Identity = 121/407 (29.73%), Postives = 183/407 (44.96%), Query Frame = 3
Query:  105 AQAAELNYLAGTCPDTYDENEDYFPDKAYPEYAETFTVEYFNSYKIVAESNTGKNYVLYQCGTDMPNITDIEVEEYISVPVTKVAVGYTTTVPRLELLGELESVVAWTTDDSLLSSACLTELISTEETALAFYNDPNCSYIWSTERINNTQLAALGVEVSFSGGELTDSCNDTSTEDLLHAVITQDYLETGGEYTALERAEWIKFFSYFYNQEATANAKFGEIESLLMCTSGNAEACSLELEDVPSVAWVSYYYNKSYN--APSTE----VYYDYAITQAGGTMVTCDKTDLFYPDNQMTSDEMVECFGDADVCVFAVDYT----TVDD--------PDALAQLKCVQNERVY-----DNVLAGTNAWFEGSIAEPQVVLEDLVVALHGDDFDYGLGDYERKLLRDV 1256
            AQ   +N    T   TY+ + DYFPDK   E A  F+V YF +YK+V    T + + LYQCGT +P       +  + + V  VAV  T+ +P L+LLG   ++    T D L+SS C+              N  + + + + + +N  QLA  GV+VSF   E   +         L +V      + G     L R EW+KF+S F+N E+ AN  +G+I+S   C    A   S    + P VAWV+Y     +N   PS +    V+       AGG       T L Y     TS + ++  G+ D+ +   D T    T++D        PD   Q K ++N+ +Y      N   G + W E +IA    +LED++  ++         DY R  LR++
Sbjct:   42 AQNLPMNQCVTT---TYNADNDYFPDKVTVEAATMFSVNYFKNYKLVTNKQTNEIFALYQCGTPVPTNLPAGAKP-LQISVKNVAVTDTSVIPFLDLLGFRSTIKLLDTSD-LVSSPCVQSA----------KNSGSLTILTTNQTLNEIQLA--GVDVSFGAFEAKPTD--------LKSVSIASATDPG----VLNRVEWLKFYSVFFNAESKANDIYGKIKSNYECLKNLANKNSPS--EKPIVAWVAYEAPSEFNQNTPSWKIADAVFKKQLTEDAGGAYFNI--TPLSYS----TSADFLKAIGNVDILI---DETFVGPTINDFYNNFGLKPDQ-QQYKFIKNQAIYREDGTTNPNDGRD-WLENAIAMGDALLEDMINVVNPK---LPKPDYNRIWLRNI 403          
BLAST of mRNA_S-ischiensis_contig11.1989.1 vs. uniprot
Match: A0A2Z6RUF7_9GLOM (Uncharacterized protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6RUF7_9GLOM)

HSP 1 Score: 111 bits (278), Expect = 4.600e-22
Identity = 114/401 (28.43%), Postives = 175/401 (43.64%), Query Frame = 3
Query:  123 NYLAGTCPDTYDENEDYFPDKAYPEYAETFTVEYFNSYKIVAESNTGKNYVLYQCGTDMPNITDIEVEEYISVPVTKVAVGYTTTVPRLELLGELESVVAWTTDDSLLSSACLTELISTEETALAFYNDPNCSYIWSTERINNTQLAALGVEVSFSGGELTDSCNDTSTEDLLHAVITQDYLETGGEYTALERAEWIKFFSYFYNQEATANAKFGEIESLLMCTSGNAEACSLELEDVPSVAWVSYYYNKSYN--APSTEV----YYDYAITQAGGTMVTCDKTDLFYPDNQMTSDEMVECFGDADVCVFAVDYTTVDD------------PDALAQLKCVQNERVY-----DNVLAGTNAWFEGSIAEPQVVLEDLVVALHGDDFDYGLGDYERKLLRDV 1256
            N     C   Y+ + DYFPDKA  E A  F++ YF SYK+V    T + + LYQCGT +P       +  I + V  VAV  T+ +P L+LLG   S+    T D L+SS C+              +    S + + + +N  +LA  GV+VSF   +     N    + +  A  +   +        + R EW+KF+S F+N EA AN  +G+I++   C    A   +   +  P VAWV+Y     +N   PS ++    +       AGG       T L Y     TS + ++   + D+ +   D T V              PD   Q K V+N+ +Y      N   G + W E +IA    +LED++  ++         DY R  LR++
Sbjct:   43 NLPMNQCVTGYNADNDYFPDKATVETATLFSINYFKSYKLVTNKQTNEIFALYQCGTPIPANLPAGAKP-IQISVKNVAVTDTSAIPFLDLLGFRSSIKLLDTSD-LVSSPCVQSA----------KDSGTISILTNNQTLNTIELA--GVDVSFGAFQ----ANPADPKSVSIAAASDPGI--------INRVEWLKFYSTFFNAEAKANDVYGKIKANYECYKNLANKNAPSAK--PIVAWVNYDAPSEFNQNTPSWQIADAAFKKQLTEDAGGAYFNV--TPLSYA----TSADFLKAIQNVDIII---DETFVGSNIADFYSNFGITPDQQQQFKFVKNQAIYREDGTTNPNDGRD-WLENAIAMGDALLEDMINVVNPK---LPKSDYNRIWLRNI 402          
BLAST of mRNA_S-ischiensis_contig11.1989.1 vs. uniprot
Match: A0A433PKN7_9FUNG (Periplasmic binding protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PKN7_9FUNG)

HSP 1 Score: 111 bits (277), Expect = 6.350e-22
Identity = 120/395 (30.38%), Postives = 172/395 (43.54%), Query Frame = 3
Query:  141 CPDTYDENEDYFPDKAYPEYAETFTVEYFNSYKIVAESNTGKNYVLYQCGT----DMPNITDIEVEEYISVPVTKVAVGYTTTVPRLELLGELESVVAWTTDDSLLSSACLTELISTEETALAFYNDPNCSYIWSTERINNTQLAALGVEVSFSGGELTDSCNDTSTEDLLHAVITQDYLETGGEYTALERAEWIKFFSYFYNQEATANAKFGEIESLLMCTSGNAEACSLELEDVPSVAWVSYYYNKSYN------APSTEVYYDYAITQAGGTMVTCDKTDLFYPDNQMTSDEMVECFGD--------ADVCV-FAVDYTTVDDPDALAQLKCVQNERVY--DNV--LAGTNAWFEGSIAEPQVVLEDLVVALHGDDFDYGLGDYERKLLRDV 1256
            C   Y+   DYFP K   + A  F+V YF++YK+V+   T + + LYQCGT    ++PN T I      SVPV +VA   TT+   LE LG    +VA   +   +SS CL + +          N+   + + ST     TQ  A  V+V F     T S N  S  ++          E  G    L RAEW++F+S ++N E  AN    +I +   C    A   +      P VAWVSY    SYN      + ST  Y     T AG T +           + +T+ + V+   D        +DV   F +  TT       +  K V N+ +Y  D V  +AG + WFE ++A    VL D++ A H     Y    Y R  LR++
Sbjct:   42 CITNYNAQTDYFPAKVQVDTATLFSVNYFHNYKLVSNKRTNETFALYQCGTPVPANLPNGTKI-----FSVPVRRVATLATTSNTFLEELGVGSDIVALDVEQ-FVSSPCLQKGL----------NNGTIAQVSSTNTTAMTQTLAQ-VDVVFGSDTATSSNNTVSDSEV----------EDPG---TLNRAEWVEFYSTWFNLEDVANNISAKINNNYNCLRRAANNIT---GTKPLVAWVSYDAPASYNNNTPSWSISTATYKQQFTTDAGATFLAPSNAYFLSSKDFLTAIQNVDVIIDETYIAASLSDVLGNFGISNTTA------SSYKFVANKAIYREDGVQTVAGGDDWFESAVAFDDAVLADVIAAAHPG---YPSAAYTRIWLRNI 394          
BLAST of mRNA_S-ischiensis_contig11.1989.1 vs. uniprot
Match: A0A7S8ECT7_9CHLR (ABC transporter substrate-binding protein n=1 Tax=Phototrophicus methaneseepsis TaxID=2710758 RepID=A0A7S8ECT7_9CHLR)

HSP 1 Score: 108 bits (270), Expect = 2.170e-21
Identity = 118/408 (28.92%), Postives = 183/408 (44.85%), Query Frame = 3
Query:   45 RTMKWIPSVGLFVIAHRLGGAQAAELN-YLAGTCPDTYDENEDYFPDKAYPEYAETFTVEYFNSYKIVAE-----SNTGKNYVLYQCGTDMPN-ITDIEVEEYISVPVTKVAVGYTTTVPRLELLGELESVVA-----WTTDDSLLSSACLTELISTEETALAFYNDPNCSYIWSTERINNTQLAALGVEVSFSGGELTDSCNDTSTEDLLHAVITQDYLETGGEYTALERAEWIKFFSYFYNQEATANAKFGEIESLLMCTSGNAEACSLELEDVPSVAWVSYYYNKSYNAPSTEVYYDYAITQAGGTMVTCDKTDLFYPDNQMTSDEMVECFGDADVCVFAVDY--TTVD---DPDALAQLKCVQNERVYDNVLA----GTNAWFEGSIAEPQVVLEDLVVALHGD 1205
            R M W+  + L ++      AQ AE+   L   C   YDE  DYFP K   EYAE+F+VEYFN+YK+V+      +     YVL QCGT  P    DI + E   VPV +     TT +P ++  G L+ +VA     +T+++++L      +++  E        D N   + STE         +  +  ++GG       +      + AV+  DY +T    + L +AEW K+ + F+N EA AN  F  I            A + ++ED P+V   S +    Y  P  +      +  AG   +  D+     P   +  + +VE   DA+  V A  Y  TT D   D    A+ + ++N  +++N L     G + +FE   A P V+L DL+   H D
Sbjct:    5 RNMLWVLCLMLALVFT--AQAQDAEVEGNLTDGCVAEYDETVDYFPAKVSVEYAESFSVEYFNNYKVVSMVPWPGAEESLEYVLVQCGTPAPEGYEDIPMFE---VPVQRFVAMTTTILPPMDEQGILDRLVAVDTTLFTSNENVLEMTASGDIV--EIGGGGSGGDINFELLLSTEP------DLVMAQEFYAGGTTLTQLQEAG----IPAVLNADYADT----SPLGQAEWGKYVALFFNTEAEANVIFDGIAERYQ----ELVALTADVEDRPTVIAASPFSGTWY-MPGADSTIAQLLADAGADFLWKDEPGTSVP---LDMEVVVENGADAEYWVNANQYWQTTDDMLADDSRFAEFQALENGNIWNNNLRMNANGGSDYFESGAAHPDVILADLIKIFHPD 383          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.1989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YGY0_9STRA9.340e-7238.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JRG5_9PHAE3.400e-7142.69Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2WNL6_9STRA2.710e-2930.86Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2VDN4_9STRA5.190e-2527.67Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7R9U9N4_9STRA1.100e-2435.80Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A2R5FZI0_9STRA1.650e-2426.40ABC-type enterochelin transport system, periplasmi... [more]
A0A1D1ZAA1_9ARAE6.240e-2329.73Uncharacterized protein MJ0642 (Fragment) n=1 Tax=... [more]
A0A2Z6RUF7_9GLOM4.600e-2228.43Uncharacterized protein n=1 Tax=Rhizophagus clarus... [more]
A0A433PKN7_9FUNG6.350e-2230.38Periplasmic binding protein n=1 Tax=Endogone sp. F... [more]
A0A7S8ECT7_9CHLR2.170e-2128.92ABC transporter substrate-binding protein n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:260067..266419 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.4
Seed ortholog evalue3.4e-32
Seed eggNOG ortholog44056.XP_009035531.1
EggNOG OGs28PRB@1,2QWDR@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_003560.1
Exons7
Model size3082
Cds size1389
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.6916237-UTR-S-ischiensis_contig11:260066..2617091622815587.6916237-UTR-S-ischiensis_contig11:260066..261709Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 260067..261709 -
1695739787.1605556-UTR-S-ischiensis_contig11:260066..2617091695739787.1605556-UTR-S-ischiensis_contig11:260066..261709Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 260067..261709 -
1622815587.7839022-UTR-S-ischiensis_contig11:266369..2664191622815587.7839022-UTR-S-ischiensis_contig11:266369..266419Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 266370..266419 -
1695739787.2443671-UTR-S-ischiensis_contig11:266369..2664191695739787.2443671-UTR-S-ischiensis_contig11:266369..266419Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 266370..266419 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.7043636-CDS-S-ischiensis_contig11:261709..2619111622815587.7043636-CDS-S-ischiensis_contig11:261709..261911Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 261710..261911 -
1695739787.178182-CDS-S-ischiensis_contig11:261709..2619111695739787.178182-CDS-S-ischiensis_contig11:261709..261911Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 261710..261911 -
1622815587.716444-CDS-S-ischiensis_contig11:262333..2624041622815587.716444-CDS-S-ischiensis_contig11:262333..262404Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 262334..262404 -
1695739787.1858795-CDS-S-ischiensis_contig11:262333..2624041695739787.1858795-CDS-S-ischiensis_contig11:262333..262404Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 262334..262404 -
1622815587.7265785-CDS-S-ischiensis_contig11:263408..2635221622815587.7265785-CDS-S-ischiensis_contig11:263408..263522Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 263409..263522 -
1695739787.1942687-CDS-S-ischiensis_contig11:263408..2635221695739787.1942687-CDS-S-ischiensis_contig11:263408..263522Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 263409..263522 -
1622815587.7363703-CDS-S-ischiensis_contig11:264257..2644351622815587.7363703-CDS-S-ischiensis_contig11:264257..264435Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 264258..264435 -
1695739787.2042305-CDS-S-ischiensis_contig11:264257..2644351695739787.2042305-CDS-S-ischiensis_contig11:264257..264435Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 264258..264435 -
1622815587.7459054-CDS-S-ischiensis_contig11:264980..2650781622815587.7459054-CDS-S-ischiensis_contig11:264980..265078Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 264981..265078 -
1695739787.2194169-CDS-S-ischiensis_contig11:264980..2650781695739787.2194169-CDS-S-ischiensis_contig11:264980..265078Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 264981..265078 -
1622815587.7580087-CDS-S-ischiensis_contig11:265442..2658261622815587.7580087-CDS-S-ischiensis_contig11:265442..265826Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 265443..265826 -
1695739787.2272446-CDS-S-ischiensis_contig11:265442..2658261695739787.2272446-CDS-S-ischiensis_contig11:265442..265826Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 265443..265826 -
1622815587.7712228-CDS-S-ischiensis_contig11:266027..2663691622815587.7712228-CDS-S-ischiensis_contig11:266027..266369Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 266028..266369 -
1695739787.2350173-CDS-S-ischiensis_contig11:266027..2663691695739787.2350173-CDS-S-ischiensis_contig11:266027..266369Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 266028..266369 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.1989.1prot_S-ischiensis_contig11.1989.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 261710..266369 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.1989.1

>prot_S-ischiensis_contig11.1989.1 ID=prot_S-ischiensis_contig11.1989.1|Name=mRNA_S-ischiensis_contig11.1989.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=463bp
MKWIPSVGLFVIAHRLGGAQAAELNYLAGTCPDTYDENEDYFPDKAYPEY
AETFTVEYFNSYKIVAESNTGKNYVLYQCGTDMPNITDIEVEEYISVPVT
KVAVGYTTTVPRLELLGELESVVAWTTDDSLLSSACLTELISTEETALAF
YNDPNCSYIWSTERINNTQLAALGVEVSFSGGELTDSCNDTSTEDLLHAV
ITQDYLETGGEYTALERAEWIKFFSYFYNQEATANAKFGEIESLLMCTSG
NAEACSLELEDVPSVAWVSYYYNKSYNAPSTEVYYDYAITQAGGTMVTCD
KTDLFYPDNQMTSDEMVECFGDADVCVFAVDYTTVDDPDALAQLKCVQNE
RVYDNVLAGTNAWFEGSIAEPQVVLEDLVVALHGDDFDYGLGDYERKLLR
DVFTEDVGSGTFYNEGSCADTSAERELTDTCIDVIDICPAGMVVPSLLAP
LAAAVAAVALLW*
back to top

mRNA from alignment at S-ischiensis_contig11:260067..266419-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.1989.1 ID=mRNA_S-ischiensis_contig11.1989.1|Name=mRNA_S-ischiensis_contig11.1989.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=6353bp|location=Sequence derived from alignment at S-ischiensis_contig11:260067..266419- (Schizocladia ischiensis KU_0333)
GTCGCCACAGCTCCGCGGCGTTCGATGGACGAGTAGCTCCCGTTCGCACC ATGAAGTGGATTCCATCGGTCGGGCTTTTCGTGATCGCGCACCGCTTGGG AGGTGCTCAGGCTGCGGAACTCAACTACCTTGCCGGAACGTGCCCGGACA CCTACGACGAGAATGAGGACTACTTTCCAGACAAGGCGTACCCCGAATAC GCCGAGACGTTCACTGTCGAGTACTTCAACAGCTACAAGATTGTTGCCGA GAGCAACACGGGCAAGAACTATGTCCTGTACCAGTGTGGCACCGACATGC CAAATATCACCGACATTGAAGTGGAGGAGTACATCTCCGTCCCCGTAACC AAAGTGGCTGTGGGCTACACCACCACCGTGCCCCGTTTGGAGGTGAGGCG TGACGTTGGGTGGAGCCCGCACCCAGCCATTTGCCCTGCTCCGTCGGCCC TGCCTCACTGACACCCGTCATCTGCCATGTTTGGATTGTGTGCGTGTGCT GCTGGAACGGCTTTCCCAACATCACTCAGCCGAATCTCGACGGGCACACC TTCTGCTGCTTTGCGTGTCCCATTTACCCGTGACTTCTATCAGCTTCTTG GGGAGCTCGAGTCTGTGGTGGCGTGGACAACGGACGACAGCCTCCTCTCC TCGGCGTGCTTGACAGAGCTCATTTCAACGGAGGAGACGGCGCTCGCGTT CTACAATGACCCGAACTGCTCGTACATCTGGAGCACCGAGCGGATCAACA ACACGCAGCTGGCGGCGCTCGGGGTGGAGGTTTCCTTTTCAGGTGGCGAG CTGACGGACTCTTGCAACGACACTTCGACCGAAGATCTGCTCCATGCCGT AATTACCCAGGACTATCTTGAGACCGGTGGGGAGTACACGGCTCTTGAGC GGGCTGAGTGGATAAAGTTCTTCTCCTACTTCTACAACCAGGAGGCAACG GCCAACGCAAAGTTTGGAGAAATTGAGGCGAGTGCAAGCGGGGGCTAGAC CCAGGAAGAGGGGCACTTGAAAGCACGCTCGTGGGTGCGGCGGGGGCGTG TCTGCAGGCCAGCGATCGCATGTTACCCTCCCCTACCCCCGCCCGCCCCC ACCTCTGAGTCCTGAGAGATATTTTTCTTTCTTCCCAAAGCGTAATCAGA CTGTGAGTCCAGAGAGATACTTTTTTTTCTTCCCGAAGGGTCATCAGACT GCGTGCCGCTACACCGCTTGGCTGTTTATTCACGCGGAAGCACACCACCA TCGGCCCTTGCGGTAGGTTTCTTGCACGTCTTGCAAGAGTAACTCTTAGG AGGCTGACATCCTTCCCGTCCCTGCCTTGTGGCCACTGCAGTCGCTGCTC ATGTGCACCTCCGGCAACGCGGAGGCGTGCAGCCTTGAGCTGGAGGACGT GCCAAGCGTCGCCTGGGTCTCCTACTACTACAACAAGAGGTGAGATAACA ATCCCCGAGAGAACACGGTGTGTCCCCTTTTGTTGGGTGATGAATACATC ACAGCAGCAACCCTTTGTATGTCGTGTGCGTCATAATCTGCACTCTGGCA AGCCAAGCGAGGCTTAGTCGGGAGCGTACTACAGACTACATGTGTGTACG AGTATGTATGTACAACTGTAGTACTTCCGGAAGTAGCTCGCTGTAGCACT TCATACTCGAGAAATAATTATACATATATATAGTATATATATGTGTACTC ACGTGGTGCTTGCCGTAGTCCCGAGCCCATTGATACTAATGTGGTACGCC TACCTGGCAGGACTATGCAACAAGGACTTTGTACGTTGAAAAAGTAAGGC AAAGAACTGGCGTTGACCGACCGCAGCATCCTCCGCCGGAGCTTCCCGCC ACTGTCTCACTTCATCCAGCTGACTATCTCGAAACTCCTTCTCCTCCTCG CCCCCCCGTGCCTGTCTGGCATGCCATGGCTCGTGTCTGTGCCTCGCCCT TGGCTTCCCCCACTGTGATGGCTCGGGTGCGCAGCTATAATGCCCCATCG ACTGAAGTGTACTACGACTACGCCATCACACAGGCGGGTGGGACGATGGT GACGTGCGACAAGACCGACCTCTTCTACCCCGACAACCAGATGACCTCGG ACGAGATGGTGGAGTGCTTTGGCGACGCCGACGTCTGTGTCTTTGCCGTT GACTACACCACGGTGAGCTGCTGACCTGGTCTGCCGCACCTACTACAGTT GTGTTTTAAAGGAAAACGCATGGTGTTCCTGACTGTGCTCTTGCCTGAGC TTGCAGCACGCAGTACTAAATATTTCCTGTACTAGTACAGCAGACCCTGC ATTTAGTTACAGTGTTAACTGGAACAACACGGGGCGAGGTGCGGGCCATG TCACTGAAGACCTCAGCAGTGGCCCTTCCTTGTACTTGTACCTCGCCAAA GGAAATTACTTACAGTAGTGTAGGTTGCATGCACAGGACATGCGTAACCC TGTCCGACGTGAGTACTACTTAGTACATATACCACATATACCCGTATGCA TTGGATGCGACTCTCCTAAGCAAAGTGAGGCCCCATCATTGAAGTGTGGT GCTTTTGCGTGCACCGACTACTGTAGATGGATGGATGAAAGGGTGGACGG AGGCCCCCCTCGAGGTGAACTTGCGCCTGTTGCGAAACGGCAACCGCCCC CCCCCATGCTGAGTGCAACTGACCATGAACACCAAGATCAAGTTGTGTGG AAACGGTCTTGGCACTGCCTCCCTTCCAATTTTTTCGAGGCGACGGCCAT TCCTATTCACACCCTTCCCGTCGCCCCCCCTTGTCCGAGAACACTCAATC TCACACACGTGCGAATGTACAGTAACTCGTTACAGTCTATATGAATCACC CCCTCCTCCACCCCCCTGGCTCCCTCCCCGGCCTGTTTGCCTGGAAGGTG GACGATCCTGATGCCCTGGCCCAGTTGAAGTGCGTGCAGAACGAGAGGGT GTATGACAACGTTCTCGCCGGAACCAACGCCTGGTTTGAGGGCTCCATTG CAGAGCCACAGGTGAGGAGGAGAGGAGGGGGGGATTAGTCTGACCGATCC CCCGTCCGTCGTGATATATCTGTCCGCAATGAAACAAGTGCCACAGTACA GTGGACTCCTGCTGTACTATGTAGGAGTAGTGGAGTGTGTACGCATGTTC GGACGAGTTTCCTCGTCTCTGTGCATGCCCCGGACCCGAACGATCCTCGT TGTTGCTCCTCCTCGTGGCTAGTGGAGTACAGGAAGTATTCCAGTTACCC AGCACAGTCTTCCCACCCAATGTACAGTGCATATGCTCGTGCAGGACCCG CTCGAAGAGTTCGTTTTTGCTTCAGGTACATGTCTACCACGGTGCACATC CGATGAGCCAACCGTGGCCTGCAGGTACCTGTCCTTGAAGCTAGCCGTGT GACCCCAGGAAGGCGTGCATGTATGACGAAAACCCAAAGCATCGCCCACG CGTGTGGTTCCCCTGGGGTAGATGCAGGGATGAACTTGGACATGACACTG TAGTGGAGAAGCCTTTGTACTTCGTATTCAACGTGCGTGTACTTGTCACA TTTCACAGTTGTGGCGGACAAGCCCTTTTTGCCCGGCACCAGACCCGGTG GCCATGTGAACATTAGACTTGGTTCGTGTGAGCCTGGGCTTCTTCTGCGG GGCGGGGCTTAACCCTTTTACCCATGGGGTCCGTATAGTCATAGAATTTT AGTGTGCAAGTCCAACTTAGCAGGGGTAAAAGGGTTTAAGAGCCGTGCTT CTTGAATCGGCGCTTCTGCGTTTTGGCAGTGGGTACATGGCTTGCCCCGA TTGGCGCCCCACCCCCCTGGGGCTTGAGAGTGTGGTACTTTACGCGCAAC TACTACCGCACCGCACTCGTAGAGCTCTAGCGACTGACCAATGTGTTGGG TTTTGAGTACTGTAGTGCAGTCGCAGCAAGATGTGCTAGGCCGCGAGGGG TAATCGATCGTGCGCCTGACGACTCCCCCACCCCCCTTTTTTTGCCGCGT CTGTCGCCTGCGCAGGTGGTCCTGGAGGATTTGGTGGTGGCCCTCCACGG CGACGATTTTGACTACGGCCTTGGTGACTATGAGCGGTGAGGAGACCCTC GAGCTTAACGCTTGGCTGTAGAGTGTACGCGTGCGGCAATCACGGTCCAC TGAGCTGTACTGTAGTGTATTCGAGTACAAACCTTTGCCCTGCGTCCTCG TGCATGGCACTGAGCCCTTGAAGGACGAGGTTACACTAAGTATTGTGTTG TAGTCCACAGGGGCCTACACGTAGTGTGCAATCAGTGTACCGCAGTCCCC CAACGGTTGAATGCGATTGAAAACGCGCGCGCGGGGAACCAACTTTCGGG GACTTGTACAAGCCCCCTCCTTCGCCAGCATAAACTCACACCAGCCCCCA TGCCGCGTTTTCCACCGCCCTTCCCACCCCACCCCCCCCCGCCCCGCCCC CCGCACAATCCCACCCCCGACACTGCAAATACGCCGGCGGCGGCGGGGGG GGGAGCAGCAAGCTGTTGAGGGATGTCTTCACCGAGGACGTGGGCTCAGG TACGTTTTACAACGAGGGCAGCTGCGCGGACACCTCCGCGGAGCGCGAGC TGACCGACACGTGCATCGACGTCATCGACATTTGCCCCGCGGGGATGGTG GTCCCGTCCTTGCTGGCGCCCTTGGCCGCCGCCGTGGCCGCCGTTGCCCT CCTGTGGTGACGGGCATCCCTTCGTTGCAATTTATATGAATCACCCCCTT GGGGCTATATATATGATGACGGGATTCGTATACAAGTAGCCCCCGGGGGG AGTTTCTGCCCCTGAAATTCGGTTGTTCGAGGGCAGGCCGATGGAATAGC CCCTCCCGTTCTTATGTGTTTCGCCCAGCCGAGACCAAAGCCCCATTCCA CACACTATAAGTTTGGGTTTGTGGCTAGGCGCCAGCCGTTTGGTTTGGTT TGGTTCAGGCAAACCCCTGATAGAGTTTGGGTACGTACACGGGAAACTCC AGGCCCATTCCCCTCGGCAAGGCATTGAGGGCGCAAGTTTCATGCGATTG TTCCGAGCGGGGTTAAAGTATGTACTCGTAGAACTGTCCTGTATGGATAG GAACAACACAGGGCGAGGTGCAGGCCACGTCGCTAAAGACCTCAACGGTG GGCCTTCCTTAGCTGTCCAGGGGAGGTTTGTGTGGGGAAGGGGAGAACGA GGAGAGGTACTGTACTGTAGTGAGTAGAGCATAGAGTATCCATGACGAGA AGGTGAAAGTTTTATCTTCGTTCACACCCATGTGCGTGTTTCATGGGCAA GGCATTCACAGCCGCGGCACTGGTGCATGTACAATCTTGTAGGCCAGGGA TCTTTCATGTTTTACGCGTGTACCCATCGACGATATATTGCGAGGTTCTT CAGGTATATCGGGATAGAACAGTCACTTGTGCCCGTTTCTGTACGACGTG CAGGAACTGTTGAACTACTTCCAAGTACGCTATATGTACTGTAGAGTGCT GCACAAGTAGGACGTAGAGTCTATATGAGCGCCGGCGAAAGGCGGTACTC ATCCGAAGGGTCCACATAATCCATGATAGCACGCATATCCTTGGCAGTCT GTGAGCATCGTGCCCGTGTCTTTGGCTGTCGCATGTGAACGCGTGCAGAC ACACATGAGCAGGCCGCCCGGGGCAGTCAGCTCTGAGTACTCTATTGAAA AAGACTCGCTTCGGCTTGCCAGGTGGTGTCTGAGTACCGTAGTCGGTAAC TACCGGTACTTGTCATGGTATCCTTCATAAGGGGGACCCCCGCCCAGTGT TGCCCCGAGCAAAACGGTACTACAGTGTTGGCGGCCCGCCAACCGCCCAG GCCCCGCTGATGACGAAATGACCCAATCAAGGCCCACCCCCGACGAAAAT TGTCCAATGCCGCCGGCAACGGCGAAAAGTTGTTAGGAGGCGCTGGGCCC TGCACGTGACTGACACGTGCCGGCCTCTCTTCTTAACCCTTCTGCCCCTG GGGTCCGTACAATCATAACGGTTTAGTGTGCAAGTCCAATTTAGCAGGGG TAGAAGGGTTAAGCCTTGACCTGGCAGCGGGCTCAGGATCCAGTCTCACC TGTTCGCCTTCCCAGAGTTCCTGGCCTTCAGTATACCGTAATCGTCGGAC AGATCTTGCTCCCCCATGCCAATTTTCGGTAGCCCTTTTCTCGCCGAATA CTAGTCGGATTTGCGTGCGAAAACTCGGAAAATCTCCCTCAGGACCTGCG GGATCTTTTCTGAAAGTTTTCGGGATAATTCAGGCCTTCCCAGCTAGAAA TATTCCCCCGAAAATTGGCCCGTGGGGGCAAAATCTCTCCGACGATTACG GTA
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig11:260067..266419-

>mRNA_S-ischiensis_contig11.1989.1 ID=mRNA_S-ischiensis_contig11.1989.1|Name=mRNA_S-ischiensis_contig11.1989.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2778bp|location=Sequence derived from alignment at S-ischiensis_contig11:260067..266419- (Schizocladia ischiensis KU_0333)
ATGAAGTGGATTCCATCGGTCGGGCTTTTCGTGATCGCGCACCGCTTGGG
AGGTGCTCAGGCTGCGGAACTCAACTACCTTGCCGGAACGTGCCCGGACA
CCTACGACGAGAATGAGGACTACTTTCCAGACAAGGCGTACCCCGAATAC
GCCGAGACGTTCACTGTCGAGTACTTCAACAGCTACAAGATTGTTGCCGA
GAGCAACACGGGCAAGAACTATGTCCTGTACCAGTGTGGCACCGACATGC
CAAATATCACCGACATTGAAGTGGAGGAGTACATCTCCGTCCCCGTAACC
AAAGTGGCTGTGGGCTACACCACCACCGTGCCCCGTTTGGAGATGAAGTG
GATTCCATCGGTCGGGCTTTTCGTGATCGCGCACCGCTTGGGAGGTGCTC
AGGCTGCGGAACTCAACTACCTTGCCGGAACGTGCCCGGACACCTACGAC
GAGAATGAGGACTACTTTCCAGACAAGGCGTACCCCGAATACGCCGAGAC
GTTCACTGTCGAGTACTTCAACAGCTACAAGATTGTTGCCGAGAGCAACA
CGGGCAAGAACTATGTCCTGTACCAGTGTGGCACCGACATGCCAAATATC
ACCGACATTGAAGTGGAGGAGTACATCTCCGTCCCCGTAACCAAAGTGGC
TGTGGGCTACACCACCACCGTGCCCCGTTTGGAGCTTCTTGGGGAGCTCG
AGTCTGTGGTGGCGTGGACAACGGACGACAGCCTCCTCTCCTCGGCGTGC
TTGACAGAGCTCATTTCAACGGAGGAGACGGCGCTCGCGTTCTACAATGA
CCCGAACTGCTCGTACATCTGGAGCACCGAGCGGATCAACAACACGCAGC
TGGCGGCGCTCGGGGTGGAGGTTTCCTTTTCAGGTGGCGAGCTGACGGAC
TCTTGCAACGACACTTCGACCGAAGATCTGCTCCATGCCGTAATTACCCA
GGACTATCTTGAGACCGGTGGGGAGTACACGGCTCTTGAGCGGGCTGAGT
GGATAAAGTTCTTCTCCTACTTCTACAACCAGGAGGCAACGGCCAACGCA
AAGTTTGGAGAAATTGAGCTTCTTGGGGAGCTCGAGTCTGTGGTGGCGTG
GACAACGGACGACAGCCTCCTCTCCTCGGCGTGCTTGACAGAGCTCATTT
CAACGGAGGAGACGGCGCTCGCGTTCTACAATGACCCGAACTGCTCGTAC
ATCTGGAGCACCGAGCGGATCAACAACACGCAGCTGGCGGCGCTCGGGGT
GGAGGTTTCCTTTTCAGGTGGCGAGCTGACGGACTCTTGCAACGACACTT
CGACCGAAGATCTGCTCCATGCCGTAATTACCCAGGACTATCTTGAGACC
GGTGGGGAGTACACGGCTCTTGAGCGGGCTGAGTGGATAAAGTTCTTCTC
CTACTTCTACAACCAGGAGGCAACGGCCAACGCAAAGTTTGGAGAAATTG
AGTCGCTGCTCATGTGCACCTCCGGCAACGCGGAGGCGTGCAGCCTTGAG
CTGGAGGACGTGCCAAGCGTCGCCTGGGTCTCCTACTACTACAACAAGAG
TCGCTGCTCATGTGCACCTCCGGCAACGCGGAGGCGTGCAGCCTTGAGCT
GGAGGACGTGCCAAGCGTCGCCTGGGTCTCCTACTACTACAACAAGAGCT
ATAATGCCCCATCGACTGAAGTGTACTACGACTACGCCATCACACAGGCG
GGTGGGACGATGGTGACGTGCGACAAGACCGACCTCTTCTACCCCGACAA
CCAGATGACCTCGGACGAGATGGTGGAGTGCTTTGGCGACGCCGACGTCT
GTGTCTTTGCCGTTGACTACACCACGCTATAATGCCCCATCGACTGAAGT
GTACTACGACTACGCCATCACACAGGCGGGTGGGACGATGGTGACGTGCG
ACAAGACCGACCTCTTCTACCCCGACAACCAGATGACCTCGGACGAGATG
GTGGAGTGCTTTGGCGACGCCGACGTCTGTGTCTTTGCCGTTGACTACAC
CACGGTGGACGATCCTGATGCCCTGGCCCAGTTGAAGTGCGTGCAGAACG
AGAGGGTGTATGACAACGTTCTCGCCGGAACCAACGCCTGGTTTGAGGGC
TCCATTGCAGAGCCACAGGTGGACGATCCTGATGCCCTGGCCCAGTTGAA
GTGCGTGCAGAACGAGAGGGTGTATGACAACGTTCTCGCCGGAACCAACG
CCTGGTTTGAGGGCTCCATTGCAGAGCCACAGGTGGTCCTGGAGGATTTG
GTGGTGGCCCTCCACGGCGACGATTTTGACTACGGCCTTGGTGACTATGA
GCGGTGGTCCTGGAGGATTTGGTGGTGGCCCTCCACGGCGACGATTTTGA
CTACGGCCTTGGTGACTATGAGCGCAAGCTGTTGAGGGATGTCTTCACCG
AGGACGTGGGCTCAGGTACGTTTTACAACGAGGGCAGCTGCGCGGACACC
TCCGCGGAGCGCGAGCTGACCGACACGTGCATCGACGTCATCGACATTTG
CCCCGCGGGGATGGTGGTCCCGTCCTTGCTGGCGCCCTTGGCCGCCGCCG
TGGCCGCCGTTGCCCTCCTGTGGTGACAAGCTGTTGAGGGATGTCTTCAC
CGAGGACGTGGGCTCAGGTACGTTTTACAACGAGGGCAGCTGCGCGGACA
CCTCCGCGGAGCGCGAGCTGACCGACACGTGCATCGACGTCATCGACATT
TGCCCCGCGGGGATGGTGGTCCCGTCCTTGCTGGCGCCCTTGGCCGCCGC
CGTGGCCGCCGTTGCCCTCCTGTGGTGA
back to top