mRNA_S-ischiensis_contig93.20958.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig93.20958.1
Unique NamemRNA_S-ischiensis_contig93.20958.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig93.20958.1 vs. uniprot
Match: A0A8A3PI27_9HELO (Uncharacterized protein n=1 Tax=Monilinia vaccinii-corymbosi TaxID=61207 RepID=A0A8A3PI27_9HELO)

HSP 1 Score: 65.5 bits (158), Expect = 7.330e-10
Identity = 32/91 (35.16%), Postives = 53/91 (58.24%), Query Frame = 2 
Query:   38 SSWGGKFALFLDSVRTRMCNDFPLPCSATNASHCVSEVQARKLLQAGEWFFHYKFTY----QRLLTARLFAGPLLGTLLDNLASFVRKTRE 298
            S+W G    F D+ + R+CN +PLPCS TNASHCV++  A ++ +AG+W ++Y +      QR +  ++  G  +G ++  L   V  T +
Sbjct:  295 SAWQGMMDHFADNFQARLCNGYPLPCSPTNASHCVTQDMADEVFRAGDWEWNYYWRANPYAQRYI--QVVEGLFIGEIVSRLERVVNGTTQ 383
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BLAST of mRNA_S-ischiensis_contig93.20958.1 vs. uniprot
Match: A0A1D9Q736_SCLS1 (Uncharacterized protein n=3 Tax=Sclerotinia TaxID=5179 RepID=A0A1D9Q736_SCLS1)

HSP 1 Score: 61.6 bits (148), Expect = 1.620e-8
Identity = 29/92 (31.52%), Postives = 52/92 (56.52%), Query Frame = 2 
Query:   41 SWGGKFALFLDSVRTRMCNDFPLPCSATNASHCVSEVQARKLLQAGEWFFHY-----KFTYQRLLTARLFAGPLLGTLLDNLASFVRKTRED 301
            +W G    F D+ + R+CN +PLPCS TN+S+CV++  A ++ +AG+W ++Y      F  Q +   ++  G  +G ++  L S    T ++
Sbjct:  295 AWQGTMDHFADNFQARLCNGYPLPCSPTNSSYCVTQEMAEEVFRAGDWEWNYYWRANPFAQQYI---QVVEGLFIGEVVSRLESVANGTIQE 383
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig93.20958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A8A3PI27_9HELO7.330e-1035.16Uncharacterized protein n=1 Tax=Monilinia vaccinii... [more]
A0A1D9Q736_SCLS11.620e-831.52Uncharacterized protein n=3 Tax=Sclerotinia TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig93contigS-ischiensis_contig93:6459..8870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size391
Cds size369
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig93.20958.1prot_S-ischiensis_contig93.20958.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig93 6459..8849 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817418.8092847-CDS-S-ischiensis_contig93:6458..66371622817418.8092847-CDS-S-ischiensis_contig93:6458..6637Schizocladia ischiensis KU_0333CDSS-ischiensis_contig93 6459..6637 -
1695741100.8351393-CDS-S-ischiensis_contig93:6458..66371695741100.8351393-CDS-S-ischiensis_contig93:6458..6637Schizocladia ischiensis KU_0333CDSS-ischiensis_contig93 6459..6637 -
1622817418.820745-CDS-S-ischiensis_contig93:7334..74581622817418.820745-CDS-S-ischiensis_contig93:7334..7458Schizocladia ischiensis KU_0333CDSS-ischiensis_contig93 7335..7458 -
1695741100.8518915-CDS-S-ischiensis_contig93:7334..74581695741100.8518915-CDS-S-ischiensis_contig93:7334..7458Schizocladia ischiensis KU_0333CDSS-ischiensis_contig93 7335..7458 -
1622817418.8347712-CDS-S-ischiensis_contig93:8783..88491622817418.8347712-CDS-S-ischiensis_contig93:8783..8849Schizocladia ischiensis KU_0333CDSS-ischiensis_contig93 8784..8849 -
1695741100.8662465-CDS-S-ischiensis_contig93:8783..88491695741100.8662465-CDS-S-ischiensis_contig93:8783..8849Schizocladia ischiensis KU_0333CDSS-ischiensis_contig93 8784..8849 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817418.8482206-UTR-S-ischiensis_contig93:8849..88701622817418.8482206-UTR-S-ischiensis_contig93:8849..8870Schizocladia ischiensis KU_0333UTRS-ischiensis_contig93 8850..8870 -
1695741100.8777106-UTR-S-ischiensis_contig93:8849..88701695741100.8777106-UTR-S-ischiensis_contig93:8849..8870Schizocladia ischiensis KU_0333UTRS-ischiensis_contig93 8850..8870 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig93.20958.1

>prot_S-ischiensis_contig93.20958.1 ID=prot_S-ischiensis_contig93.20958.1|Name=mRNA_S-ischiensis_contig93.20958.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=123bp
MAGPSVVMGREVCAIFGQRAHEDVQRLSFALQRDERLPLCFGGSGPQAAA
GRGVVLPLQVYLPAAIDGQAIRRPPVGHAARQPGEFRAKNTRGCGGGGGG
GRGRSTGRTRRCCCGGSGRFGPF
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mRNA from alignment at S-ischiensis_contig93:6459..8870-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig93.20958.1 ID=mRNA_S-ischiensis_contig93.20958.1|Name=mRNA_S-ischiensis_contig93.20958.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2412bp|location=Sequence derived from alignment at S-ischiensis_contig93:6459..8870- (Schizocladia ischiensis KU_0333)
GGCTGGGCTGTCGAACCGGCCATGGCTGGCCCTTCCGTCGTCATGGGGAG
GGAAGTTTGCGCTATTTTTGGACAGCGTGCGCACGAGGTGAGCGAGACGA
GCGTACTGTACTGTACTCACTGTACTGTACTGTATTGAACCGTATTGCAC
TGTGCTGCATTGGACTGCACTGCACTGCACTGTACTGTACTGTACTGTAC
TGTACTGCAATGTATTTTGCCCTGTGCTGCATTGTACTGTACTGTACTGC
ACTGTACTAAACTGCACTGTACTGCACTGCATTGCACTGTACTCACTGCA
CTCTACGGTAAAGTGGCAGTACAGCACAGTGCGCGGCTGTGCTTGTGACG
GTCTGTGCGTGATTGGATGCGCATTGCGTCGTTGGGACCGCCCGGCCAGC
CTAGGCAGACTTGCCTGGGAACGGAAGTACAGTAGTGTACAGTAGCAACA
GGAACGACACAGGGCGAAGTGCCGGCCACGTCGCTAAATATCTCAACAGT
GGCCCTTCCTTGGCTCGCCAGGGGACGTATGCATGGCGAAGGGGAGAAGG
AGGAGGAGAAGAGGAGGGGGAGGAGGAGGAGGAGGGGGAGGAGGAGGAGG
AGGAGGAGGGGAGGGGGGGGGGGGGGAGGGGGGGGGGGGGAAGGAAGAGG
AAGTGTGCAGCAGTGTAGTGCTGCTGCTATGTTGTGACCCTTCTTGTGCA
GCGCCTCCTCTGGAACGTGCTGGTTTGTAGGCAGCTCTTTTGTGCGGCCC
TGCGCGCTGCAGCTACTGCGCGCCCCACACGGGGAGGGGGGCGGGGGGAG
GAGGGGGAGGGGGGGGGGAAGGAAGAGGAAGTGTGCAGCAGTGTAGTGCT
GCTGCTATGTTGTGACCCTTCTTGTGCAGCGCCTCCTCTGGAACGTGCTG
GTTTGTAGGCAGCTCTTTTGTGCGGCCCTGCGCGCTGCAGCTACTGCGCG
CCCCACACGTGCTGACTATGAAAGTGCACCAGTCATGCCTAGAGATGTTG
CAAGTGTATGAGCATGCGGAGATAGTGCTTGGTTTTGGGGGATTCATAGA
GCGGGCGAAACAATTGTTCAATGCGACTTGGGCCACCTGTACATGTTTTA
GCTCCTTGGCAACCCTTTTCTCTTCTTTTCTGATAGCCTCTTGGCATTCT
CTTTCCGTGCTTCCAAGCGCCTCCAAGCACTGCAGTATGCTTGGGAGTAT
CGTCAGACTGGGACATGTGACAAGCATGTGTCGGGTCAAGCAGCAGGTCA
CGGCACGGCAGTACGAGCACCAACCCAGCCCCTCCTCACTCACTCTCACG
ATGCTCAGACGACTTGCCAAGTGCTGCCGTGCAAGCCAAGCGAGTGCCTC
CCCCACAGTGCCAGACGGACTCCTCACCTCCCTCCAACACAACGCCTGCG
TTTTGCTCGCAGGATGTGCAACGACTTTCCTTTGCCCTGCAGCGCGACGA
ACGCCTCCCACTGTGTTTCGGAGGTTCAGGCCCGCAAGCTGCTGCAGGCC
GGGGAGTGGTTCTTCCACTACAAGTTTACCTACCAGGTGTGATAATATCA
CGTGTGAAAATTGTTATGTGGTTCTTCCACAAGTTTACCTACCAGGTGTG
ATGATTGTGATGTGGTTCTTCCACTATAAGTTTGCCTACCGGTGTGATAA
TTGTGATGCAATTCTTCCACTACAAGTGTAACTACCAGGTGCGATGCCAT
GTAGTGCGATGCATGCCAAACTCTGCGGTTCTTCCACTACAAGTTTGCCG
ACCAGGTGGGACGTGACCAGTGGCAAACTCCGCGGTGATGTAGTCTGACG
TCACATCCTGTAACGTTGTGTCCGACATTATGAACGTAGTTTGAAATACG
GCAGCAAGTTCGACTAAAGCACTACTCGTACAGCTGTACATGGTACTGTA
CATAGTACTCATCTATGCGTGCATGTCATGTCAGGCGACACAAACATGTA
GGCACTCGTGTTGCCGAACCATGTCGAAACTTGTACAGAGCAATAGACCT
CTACTACTGTATGTACCTACATGTAAGGTAGTAGACCTCTACGTAGAGGT
AGCATATATATCAGAGACCATTGACCACCCCCCCATAGGTGCTAACAAAA
TTTTCGTGGATTCTTCTTGCCCCCCCACATCATTGCCTGCAGCGGCTAGT
GACGGCCAGGCCATGTGCGGGCCCCCTGTTGCACGCTGCTAACCCTAACC
CTAACCCGAAACCCTAACCCTCATTGCCTGCAGCGGCTATTGACGGCCAG
GCTATTCGCAGGCCCCCTGTTGGGCACGCTGCTAGACAACCTGGCGAGTT
TCGTGCGAAAAACACGAGAGGATGTGGGGGCGGAGGCGGCGGCGGAAGAG
GCAGAAGCACAGGCCGCACAAGACGCTGCTGCTGCGGCGGCAGCGGCAGA
TTCGGCCCCTTT
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Coding sequence (CDS) from alignment at S-ischiensis_contig93:6459..8870-

>mRNA_S-ischiensis_contig93.20958.1 ID=mRNA_S-ischiensis_contig93.20958.1|Name=mRNA_S-ischiensis_contig93.20958.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=738bp|location=Sequence derived from alignment at S-ischiensis_contig93:6459..8870- (Schizocladia ischiensis KU_0333)
ATGGCTGGCCCTTCCGTCGTCATGGGGAGGGAAGTTTGCGCTATTTTTGG
ACAGCGTGCGCACGAGATGGCTGGCCCTTCCGTCGTCATGGGGAGGGAAG
TTTGCGCTATTTTTGGACAGCGTGCGCACGAGGATGTGCAACGACTTTCC
TTTGCCCTGCAGCGCGACGAACGCCTCCCACTGTGTTTCGGAGGTTCAGG
CCCGCAAGCTGCTGCAGGCCGGGGAGTGGTTCTTCCACTACAAGTTTACC
TACCAGGATGTGCAACGACTTTCCTTTGCCCTGCAGCGCGACGAACGCCT
CCCACTGTGTTTCGGAGGTTCAGGCCCGCAAGCTGCTGCAGGCCGGGGAG
TGGTTCTTCCACTACAAGTTTACCTACCAGCGGCTATTGACGGCCAGGCT
ATTCGCAGGCCCCCTGTTGGGCACGCTGCTAGACAACCTGGCGAGTTTCG
TGCGAAAAACACGAGAGGATGTGGGGGCGGAGGCGGCGGCGGAAGAGGCA
GAAGCACAGGCCGCACAAGACGCTGCTGCTGCGGCGGCAGCGGCAGATTC
GGCCCCTTTCGGCTATTGACGGCCAGGCTATTCGCAGGCCCCCTGTTGGG
CACGCTGCTAGACAACCTGGCGAGTTTCGTGCGAAAAACACGAGAGGATG
TGGGGGCGGAGGCGGCGGCGGAAGAGGCAGAAGCACAGGCCGCACAAGAC
GCTGCTGCTGCGGCGGCAGCGGCAGATTCGGCCCCTTT
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