mRNA_S-ischiensis_contig92.20953.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig92.20953.1
Unique NamemRNA_S-ischiensis_contig92.20953.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig92.20953.1 vs. uniprot
Match: D7G0H9_ECTSI (Ankyrin repeat domain protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0H9_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.610e-15
Identity = 64/130 (49.23%), Postives = 76/130 (58.46%), Query Frame = 1
Query:  424 NDATPLDLAAAGGHAEAIAQLLDAGAAVNAPSASGHTALHATVQHG-AACAYIKEGSIEVLLRFAADELATDNNGRMPAQVIGQFVDDADRDPAAE--ACITELLQNAPSDRAWRRRGWLVMLRARHAAA 804
            N+ TPL LAA  GHA AIA+LL +GA V+A      +ALH     G AAC       +  LLR  ADE   D +G  PAQVIG   +  +R   AE    I E+L+ AP+DRAWRRRGWLVMLR R   A
Sbjct:   68 NNDTPLLLAAWLGHATAIAKLLASGARVDADGIP-RSALHCACMQGHAAC-------VSELLRGGADETVEDEDGNSPAQVIGTMSESLER---AEDIVLIREMLRRAPADRAWRRRGWLVMLRNRDCVA 186          
BLAST of mRNA_S-ischiensis_contig92.20953.1 vs. uniprot
Match: D8LP48_ECTSI (EsV-1-8 n=2 Tax=root TaxID=1 RepID=D8LP48_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 2.770e-13
Identity = 50/113 (44.25%), Postives = 63/113 (55.75%), Query Frame = 1
Query:  469 EAIAQLLDAGAAVNAPSASGHTALHATVQHGAACAYIKEGSIEVLLRFAADELATDNNGRMPAQVIGQFVDDADRDPAAEACITELLQNAPSDRAWRRRGWLVMLRARHAAAG 807
            +A   LL  GA VN  S  G T LH  +  G+    +    +++LLR+ ADE   D  G+ PA  +G+     + DPA    +  LL NAP DRAWRRRGWLVMLRA   AAG
Sbjct:  326 DARLMLLQRGAPVNFCSYGGQTPLHHIMNRGSCVPSV----VDLLLRWGADETMKDERGKTPADYLGRI---RNLDPAVAERVRHLLVNAPKDRAWRRRGWLVMLRAHTLAAG 431          
BLAST of mRNA_S-ischiensis_contig92.20953.1 vs. uniprot
Match: D7FYG4_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYG4_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.740e-9
Identity = 52/123 (42.28%), Postives = 66/123 (53.66%), Query Frame = 1
Query:  430 ATPLDLAAAGGHAEAIAQLLDAGAAVNAPSASGHTALHATVQHGAACAYIKEGSIEV---LLRFAADELATDNNGRMPAQVIGQFVDDADRDPAAEACITELLQNAPSDRAWRRRGWLVMLRA 789
            +T L +AA     + +  LL  GA  NAP   GH  LH        C Y K  S+ V   LLR+ A+E ATDN+G  PA  I Q  D++D        +  LL NAP+ RAWRRRG ++MLRA
Sbjct:  327 STSLHVAAYWETLDTMLALLQKGANANAPDDDGHGPLHLV------CKYPKARSVAVADLLLRWGAEETATDNDGNTPADFI-QSSDESD------GRLQRLLANAPAGRAWRRRGMVIMLRA 436          
BLAST of mRNA_S-ischiensis_contig92.20953.1 vs. uniprot
Match: D8LQI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQI9_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 3.630e-9
Identity = 47/126 (37.30%), Postives = 70/126 (55.56%), Query Frame = 1
Query:  433 TPLDLAAAGGHAE--AIAQLLDAGAAVNAPSASGHTALHATVQHGAACAYIKEGSIEVLLRFAADELATDNNGRMPAQVI-----GQFVDDADRDPAAEACITELLQNAPSDRAWRRRGWLVMLRA 789
            TPL +A  G       +  LL+ G+ ++A +    T LH       AC +     +E+LLR+ ADE  T+N G+ PA VI       F D+ +R+ A    I  +L++AP+DR+WRRRGWLV+ R+
Sbjct:  159 TPLHIAVNGRKVSDGTVRALLEGGSNIHARALLDQTPLHI------ACKHASVTGVELLLRWGADEKLTNNVGKTPADVIRPRRQNDFDDEEERE-ADNQRIRRMLEHAPADRSWRRRGWLVLSRS 277          
BLAST of mRNA_S-ischiensis_contig92.20953.1 vs. uniprot
Match: D8LB27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 5.680e-9
Identity = 44/105 (41.90%), Postives = 61/105 (58.10%), Query Frame = 1
Query:  484 LLDAGAAVNAPSASGHTALHATVQHGAACAYIKEGSIEVLLRFAADELATDNNGRMPAQVIGQFV--DDADRDPAAE-ACITELLQNAPSDRAWRRRGWLVMLRA 789
            LL+ GA  NA      T LH       AC +    ++E+LLR+ ADE  +++NG +PA VIG +   D  D D  A+   I  +L  AP+DR+WRRRGWLV+ R+
Sbjct:  337 LLEGGANTNAHGDHSGTPLHV------ACMHSNVAAVELLLRWGADETCSNDNGDVPADVIGVYDRGDVNDEDVKADHKRIRRMLARAPADRSWRRRGWLVLSRS 435          
BLAST of mRNA_S-ischiensis_contig92.20953.1 vs. uniprot
Match: D7FLL7_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL7_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.010e-8
Identity = 53/125 (42.40%), Postives = 66/125 (52.80%), Query Frame = 1
Query:  433 TPLDLAAAGGHAEAIAQLLDAGAAV-NAPSASGHTALHATVQHGAACAYIKEG---SIEVLLRFAADELATDNNGRMPAQVIGQF-VDDADRDPAAEACITELLQNAPSDRAWRRRGWLVMLRAR 792
            TPL  AA       +A LL   A+V N   A+G T LH       AC   +EG   SI++LLR+ ADE A +  GR P  V+G    D+    P        LL  AP+DR WRRRGWLV+LR+R
Sbjct:  310 TPLHAAAEHHRVNCVAALLQNNASVRNRFDATGDTPLHR------ACVEQREGLAASIDLLLRWGADETARNKRGRTPLDVLGATRTDNPHCSPDEVDRARLLLVRAPTDRRWRRRGWLVVLRSR 428          
BLAST of mRNA_S-ischiensis_contig92.20953.1 vs. uniprot
Match: A0A6H5L1W1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1W1_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 3.340e-8
Identity = 46/112 (41.07%), Postives = 60/112 (53.57%), Query Frame = 1
Query:  475 IAQLLDAGAAVNAPSASGHTALHATVQHGAACAYIKEGSIEVLLRFAADELATDNNGRMPAQVIGQFVDDADR----DPAAEACITELLQNAPSDRAWRRRGWLVMLRARHA 798
            I +L  AGA   A ++ G T LH    H  AC+ +    +  LL   ADE A DNN    A+V+G  +D+       DPA    I  +L  AP++RAWRRR W VM+RAR A
Sbjct:  300 IHRLEQAGADFQATNSHGETPLH----H--ACSMMDFAIVSTLLNRGADEAARDNNNHTCAEVLGDGLDEEAGGLRGDPAMRERILIVLTKAPAERAWRRRSWTVMMRAREA 405          
BLAST of mRNA_S-ischiensis_contig92.20953.1 vs. uniprot
Match: A0A6H5K513_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K513_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 8.130e-8
Identity = 44/109 (40.37%), Postives = 59/109 (54.13%), Query Frame = 1
Query:  469 EAIAQLLDAGAAVNAPSASGHTALHATVQHGAACAYIKEGSIEVLLRFAADELATDNNGRMPAQVIGQFVDDADRD-PAAEACITELLQNAPSDRAWRRRGWLVMLRAR 792
            EA+  LL  GA V+  +  G TALH     G A  Y  + +++ LLR+ A E A D N   P   + +   +   + P  +  + ELL  AP+DRAWRRRGWLVML  R
Sbjct:  322 EALLALLSRGARVDEKTDDGSTALHLA---GHARGYKVDDTVDTLLRWGASEQAVDENDETPVDRLTEVAREVVWEWPELDRAL-ELLARAPADRAWRRRGWLVMLHER 426          
BLAST of mRNA_S-ischiensis_contig92.20953.1 vs. uniprot
Match: D8LCR2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCR2_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 1.230e-7
Identity = 47/120 (39.17%), Postives = 60/120 (50.00%), Query Frame = 1
Query:  433 TPLDLAAAGGHAEAIAQLLDAGAA-VNAPSASGHTALHATVQHGAACAYIKEGSIEVLLRFAADELATDNNGRMPAQVIGQFVDDADRDPAAEACITELLQNAPSDRAWRRRGWLVMLRA 789
            TPL  AA  G+   +  LL  G A  NA    GH+ LH    +   C+       ++LLR  ADE ATD +   PA ++                + +LL NAP+DRAWRRRG LVMLRA
Sbjct:  242 TPLHEAAYQGNYPGMLVLLQKGRANANAQDEHGHSPLHILCMNPQVCS--AAACSDILLRSGADETATDEDRHTPADIMASS-------EGHNGWLQQLLANAPADRAWRRRGTLVMLRA 352          
BLAST of mRNA_S-ischiensis_contig92.20953.1 vs. uniprot
Match: D7FSI6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI6_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 1.240e-7
Identity = 51/134 (38.06%), Postives = 64/134 (47.76%), Query Frame = 1
Query:  400 LEAIDGMTNDATPLDLAAAGGHAEAIAQLLDAGAAVNAPSASGHTALHATVQHGAACAYIKEGSIEV---LLRFAADELATDNNGRMPAQVIGQFVDDADRDPAAEACITELLQNAPSDRAWRRRGWLVMLRAR 792
            +E++ G     TPL  AA     EA+  LL  GA  N P  +G   LH              G +EV   LLR+ A E A + +G  PA+V  +            A    LL  AP+DRAWRRRGW+VMLRAR
Sbjct:  230 VESLPGSPCYDTPLLAAAESMSNEALRVLLRNGADPNKPDDNGSMPLHLAAHEQT------PGVMEVVDLLLRWGASETAVNKHGNTPAEVFQRLAIHRPDATEERAGALVLLARAPADRAWRRRGWVVMLRAR 357          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig92.20953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0H9_ECTSI1.610e-1549.23Ankyrin repeat domain protein n=2 Tax=Ectocarpus T... [more]
D8LP48_ECTSI2.770e-1344.25EsV-1-8 n=2 Tax=root TaxID=1 RepID=D8LP48_ECTSI[more]
D7FYG4_ECTSI1.740e-942.28Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LQI9_ECTSI3.630e-937.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LB27_ECTSI5.680e-941.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FLL7_ECTSI1.010e-842.40Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5L1W1_9PHAE3.340e-841.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K513_9PHAE8.130e-840.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCR2_ECTSI1.230e-739.17Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7FSI6_ECTSI1.240e-738.06Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig92contigS-ischiensis_contig92:427598..428680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue1.1e-14
Seed eggNOG ortholog2880.D7G0H9
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size807
Cds size807
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817418.6115189-CDS-S-ischiensis_contig92:427597..4281621622817418.6115189-CDS-S-ischiensis_contig92:427597..428162Schizocladia ischiensis KU_0333CDSS-ischiensis_contig92 427598..428162 +
1695741100.6383376-CDS-S-ischiensis_contig92:427597..4281621695741100.6383376-CDS-S-ischiensis_contig92:427597..428162Schizocladia ischiensis KU_0333CDSS-ischiensis_contig92 427598..428162 +
1622817418.622342-CDS-S-ischiensis_contig92:428438..4286801622817418.622342-CDS-S-ischiensis_contig92:428438..428680Schizocladia ischiensis KU_0333CDSS-ischiensis_contig92 428439..428680 +
1695741100.650615-CDS-S-ischiensis_contig92:428438..4286801695741100.650615-CDS-S-ischiensis_contig92:428438..428680Schizocladia ischiensis KU_0333CDSS-ischiensis_contig92 428439..428680 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig92.20953.1prot_S-ischiensis_contig92.20953.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig92 427598..428680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig92.20953.1

>prot_S-ischiensis_contig92.20953.1 ID=prot_S-ischiensis_contig92.20953.1|Name=mRNA_S-ischiensis_contig92.20953.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=269bp
WLATPLDLATRAGNLDVVEALLELGAHVNGAVRDGGKSTIHLAAAGGHML
VLQAVLRAGADINARDGEGCTALHWAAEEGHVAAVEALLEAGAAANAKIA
DQRKGTALHRACFHGHSAVVQALLKAGVNPEIRLEAIDGMTNDATPLDLA
AAGGHAEAIAQLLDAGAAVNAPSASGHTALHATVQHGAACAYIKEGSIEV
LLRFAADELATDNNGRMPAQVIGQFVDDADRDPAAEACITELLQNAPSDR
AWRRRGWLVMLRARHAAAG
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mRNA from alignment at S-ischiensis_contig92:427598..428680+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig92.20953.1 ID=mRNA_S-ischiensis_contig92.20953.1|Name=mRNA_S-ischiensis_contig92.20953.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1083bp|location=Sequence derived from alignment at S-ischiensis_contig92:427598..428680+ (Schizocladia ischiensis KU_0333)
TGGCTGGCCACCCCTCTTGACCTCGCAACCAGGGCGGGAAACTTGGACGT GGTGGAAGCTCTTTTGGAGTTGGGGGCACATGTGAACGGAGCAGTCCGTG ACGGGGGCAAAAGCACCATCCACCTCGCGGCTGCGGGGGGGCACATGCTT GTCCTGCAGGCAGTGCTGCGGGCTGGGGCGGACATCAACGCCAGGGATGG AGAAGGATGTACAGCTCTCCACTGGGCTGCTGAAGAGGGCCATGTGGCGG CGGTGGAGGCACTGCTGGAGGCAGGGGCTGCGGCAAATGCCAAGATAGCA GACCAGCGCAAGGGGACCGCGCTCCACCGGGCTTGTTTCCATGGCCACTC CGCCGTGGTGCAGGCGCTGCTCAAGGCTGGCGTCAACCCGGAAATCCGGC TCGAGGCGATAGATGGGATGACCAATGATGCCACCCCCCTGGACCTGGCC GCTGCAGGGGGGCATGCAGAAGCGATAGCACAGCTGCTGGATGCGGGTGC CGCCGTCAACGCCCCGTCCGCATCAGGGCATACAGCGCTCCACGCAACCG TACAGCATGGCGCAGGTTGTGCAGCGGCTTGCTCGATGCCGGTGCCCATG TGGAGGCCGCAACCACTACCTATCAGATTACACCCTTGCACTCGGCAGCA TTTTTTGGCTGTGTGGGGTCACTGAAGTGTCTGCTGTATGCGGGGTCAAA CAAAGAAGCCAGAAGATATGATGGGCACACCTCTCCACGGGGCTGCCTTG ATGGGGCATCCGGAGGCAGGCAAGGCTCTTCTGGAGGCATGTGCCGATGT TTGGGCGCGTGCCAATATTTGAATTCCCCCCCTTCACGCAGCCTGCGCGT ACATCAAGGAGGGGTCCATTGAGGTCCTCCTCCGCTTTGCGGCGGATGAG CTGGCCACGGACAACAACGGCCGCATGCCCGCCCAAGTCATTGGTCAGTT CGTGGATGACGCTGACCGGGACCCGGCCGCGGAAGCATGCATCACTGAGC TGCTGCAGAATGCACCCTCTGACCGTGCCTGGCGCCGCCGGGGATGGCTG GTCATGCTCCGGGCCCGCCATGCCGCCGCGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig92:427598..428680+

>mRNA_S-ischiensis_contig92.20953.1 ID=mRNA_S-ischiensis_contig92.20953.1|Name=mRNA_S-ischiensis_contig92.20953.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1614bp|location=Sequence derived from alignment at S-ischiensis_contig92:427598..428680+ (Schizocladia ischiensis KU_0333)
TGGCTGGCCACCCCTCTTGACCTCGCAACCAGGGCGGGAAACTTGGACGT
GGTGGAAGCTCTTTTGGAGTTGGGGGCACATGTGAACGGAGCAGTCCGTG
ACGGGGGCAAAAGCACCATCCACCTCGCGGCTGCGGGGGGGCACATGCTT
GTCCTGCAGGCAGTGCTGCGGGCTGGGGCGGACATCAACGCCAGGGATGG
AGAAGGATGTACAGCTCTCCACTGGGCTGCTGAAGAGGGCCATGTGGCGG
CGGTGGAGGCACTGCTGGAGGCAGGGGCTGCGGCAAATGCCAAGATAGCA
GACCAGCGCAAGGGGACCGCGCTCCACCGGGCTTGTTTCCATGGCCACTC
CGCCGTGGTGCAGGCGCTGCTCAAGGCTGGCGTCAACCCGGAAATCCGGC
TCGAGGCGATAGATGGGATGACCAATGATGCCACCCCCCTGGACCTGGCC
GCTGCAGGGGGGCATGCAGAAGCGATAGCACAGCTGCTGGATGCGGGTGC
CGCCGTCAACGCCCCGTCCGCATCAGGGCATACAGCGCTCCACGCAACCG
TACAGCATGGCGCAGTGGCTGGCCACCCCTCTTGACCTCGCAACCAGGGC
GGGAAACTTGGACGTGGTGGAAGCTCTTTTGGAGTTGGGGGCACATGTGA
ACGGAGCAGTCCGTGACGGGGGCAAAAGCACCATCCACCTCGCGGCTGCG
GGGGGGCACATGCTTGTCCTGCAGGCAGTGCTGCGGGCTGGGGCGGACAT
CAACGCCAGGGATGGAGAAGGATGTACAGCTCTCCACTGGGCTGCTGAAG
AGGGCCATGTGGCGGCGGTGGAGGCACTGCTGGAGGCAGGGGCTGCGGCA
AATGCCAAGATAGCAGACCAGCGCAAGGGGACCGCGCTCCACCGGGCTTG
TTTCCATGGCCACTCCGCCGTGGTGCAGGCGCTGCTCAAGGCTGGCGTCA
ACCCGGAAATCCGGCTCGAGGCGATAGATGGGATGACCAATGATGCCACC
CCCCTGGACCTGGCCGCTGCAGGGGGGCATGCAGAAGCGATAGCACAGCT
GCTGGATGCGGGTGCCGCCGTCAACGCCCCGTCCGCATCAGGGCATACAG
CGCTCCACGCAACCGTACAGCATGGCGCAGCCTGCGCGTACATCAAGGAG
GGGTCCATTGAGGTCCTCCTCCGCTTTGCGGCGGATGAGCTGGCCACGGA
CAACAACGGCCGCATGCCCGCCCAAGTCATTGGTCAGTTCGTGGATGACG
CTGACCGGGACCCGGCCGCGGAAGCATGCATCACTGAGCTGCTGCAGAAT
GCACCCTCTGACCGTGCCTGGCGCCGCCGGGGATGGCTGGTCATGCTCCG
GGCCCGCCATGCCGCCGCGGGGCCTGCGCGTACATCAAGGAGGGGTCCAT
TGAGGTCCTCCTCCGCTTTGCGGCGGATGAGCTGGCCACGGACAACAACG
GCCGCATGCCCGCCCAAGTCATTGGTCAGTTCGTGGATGACGCTGACCGG
GACCCGGCCGCGGAAGCATGCATCACTGAGCTGCTGCAGAATGCACCCTC
TGACCGTGCCTGGCGCCGCCGGGGATGGCTGGTCATGCTCCGGGCCCGCC
ATGCCGCCGCGGGG
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