mRNA_S-ischiensis_contig92.20956.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig92.20956.1
Unique NamemRNA_S-ischiensis_contig92.20956.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig92.20956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig92contigS-ischiensis_contig92:455115..455851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size232
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817416.1973128-CDS-S-ischiensis_contig92:455114..4552581622817416.1973128-CDS-S-ischiensis_contig92:455114..455258Schizocladia ischiensis KU_0333CDSS-ischiensis_contig92 455115..455258 +
1695741098.6135652-CDS-S-ischiensis_contig92:455114..4552581695741098.6135652-CDS-S-ischiensis_contig92:455114..455258Schizocladia ischiensis KU_0333CDSS-ischiensis_contig92 455115..455258 +
1622817416.2126143-CDS-S-ischiensis_contig92:455763..4558501622817416.2126143-CDS-S-ischiensis_contig92:455763..455850Schizocladia ischiensis KU_0333CDSS-ischiensis_contig92 455764..455850 +
1695741098.628287-CDS-S-ischiensis_contig92:455763..4558501695741098.628287-CDS-S-ischiensis_contig92:455763..455850Schizocladia ischiensis KU_0333CDSS-ischiensis_contig92 455764..455850 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig92.20956.1prot_S-ischiensis_contig92.20956.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig92 455115..455850 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig92.20956.1

>prot_S-ischiensis_contig92.20956.1 ID=prot_S-ischiensis_contig92.20956.1|Name=mRNA_S-ischiensis_contig92.20956.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=77bp
EKVSTACYVAGKGSLVWFLLAKLAITGMDSRSHGAGASQQPFWQRALQVV
NRFFLYVYYPLSVVAVSILAGGEVNEE
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mRNA from alignment at S-ischiensis_contig92:455115..455851+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig92.20956.1 ID=mRNA_S-ischiensis_contig92.20956.1|Name=mRNA_S-ischiensis_contig92.20956.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=737bp|location=Sequence derived from alignment at S-ischiensis_contig92:455115..455851+ (Schizocladia ischiensis KU_0333)
GAGAAGGTGTCCACTGCCTGCTACGTAGCGGGCAAGGGGAGCTTGGTGTG
GTTTCTATTGGCAAAGCTGGCCATCACCGGGATGGACTCGCGCAGCCATG
GCGCCGGCGCCTCCCAGCAGCCCTTCTGGCAGCGAGCCCTGCAGGTAACA
ACCATGGCACAAAATTGTGTTTTTTTTTTTTGCCCCAAAAGCCTTTTTCA
AGATCGAAAATTTTCGCCCAAATTGCGATCGAAAACCGGCCCAAATATCG
ACAAGGCCCTAACGCAGCCAACAGCCCTTCTGGCAGCGGGCCCTGCAGGT
AACCATGGCACAGGAGTGCGATTTGGTTTGCCCAAATAGTTTTTGCAATA
TCGATTTTTTTTCGCCTAAATTGTGATCGTAAACTAGCCCGAATATCGAC
AAAAATATCGAAGTACCGATGCCGGGTCGCGAAACGCCGTATCCAGGTAT
AGAAACCCCAATGACTTTGGCGAGTACTATCCCGCCAAAGTCCGTGGGCT
TTTGACAACTTGATACGGCGTTTTGGCATTGAAGGCCCAAGCACTTGCCC
AAATATCGATTTTTTCCCACAAATATCGATTTGCTCGACTTGTGGCCCCA
AGTTCCTTTTTTTTTAAACGTCGCAAGTTTGTGCCATGGTTACTTGCAGG
TGGTCAACCGTTTCTTCCTGTACGTGTACTACCCCTTGTCGGTGGTGGCG
GTCTCCATATTGGCGGGCGGCGAGGTGAACGAGGAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig92:455115..455851+

>mRNA_S-ischiensis_contig92.20956.1 ID=mRNA_S-ischiensis_contig92.20956.1|Name=mRNA_S-ischiensis_contig92.20956.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=462bp|location=Sequence derived from alignment at S-ischiensis_contig92:455115..455851+ (Schizocladia ischiensis KU_0333)
GAGAAGGTGTCCACTGCCTGCTACGTAGCGGGCAAGGGGAGCTTGGTGTG
GTTTCTATTGGCAAAGCTGGCCATCACCGGGATGGACTCGCGCAGCCATG
GCGCCGGCGCCTCCCAGCAGCCCTTCTGGCAGCGAGCCCTGCAGGAGAAG
GTGTCCACTGCCTGCTACGTAGCGGGCAAGGGGAGCTTGGTGTGGTTTCT
ATTGGCAAAGCTGGCCATCACCGGGATGGACTCGCGCAGCCATGGCGCCG
GCGCCTCCCAGCAGCCCTTCTGGCAGCGAGCCCTGCAGGTGGTCAACCGT
TTCTTCCTGTACGTGTACTACCCCTTGTCGGTGGTGGCGGTCTCCATATT
GGCGGGCGGCGAGGTGAACGAGGAGGTGGTCAACCGTTTCTTCCTGTACG
TGTACTACCCCTTGTCGGTGGTGGCGGTCTCCATATTGGCGGGCGGCGAG
GTGAACGAGGAG
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