mRNA_S-ischiensis_contig91.20903.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig91.20903.1
Unique NamemRNA_S-ischiensis_contig91.20903.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig91.20903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig91contigS-ischiensis_contig91:198144..204449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue3.6e-13
Seed eggNOG ortholog2880.D7FPQ2
EggNOG free text desc.Bacterial trigger factor protein (TF)
EggNOG OGs2E9TB@1,2SG42@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionTrigger factor, ribosome-binding, bacterial
Ec32 orthologEc-20_000920.1
Exons4
Model size1244
Cds size636
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig91.20903.1prot_S-ischiensis_contig91.20903.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig91 198712..204409 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817414.4925697-UTR-S-ischiensis_contig91:198143..1987111622817414.4925697-UTR-S-ischiensis_contig91:198143..198711Schizocladia ischiensis KU_0333UTRS-ischiensis_contig91 198144..198711 -
1695741097.206616-UTR-S-ischiensis_contig91:198143..1987111695741097.206616-UTR-S-ischiensis_contig91:198143..198711Schizocladia ischiensis KU_0333UTRS-ischiensis_contig91 198144..198711 -
1622817414.5520256-UTR-S-ischiensis_contig91:204409..2044491622817414.5520256-UTR-S-ischiensis_contig91:204409..204449Schizocladia ischiensis KU_0333UTRS-ischiensis_contig91 204410..204449 -
1695741097.2685978-UTR-S-ischiensis_contig91:204409..2044491695741097.2685978-UTR-S-ischiensis_contig91:204409..204449Schizocladia ischiensis KU_0333UTRS-ischiensis_contig91 204410..204449 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817414.5042524-CDS-S-ischiensis_contig91:198711..1988521622817414.5042524-CDS-S-ischiensis_contig91:198711..198852Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 198712..198852 -
1695741097.2197628-CDS-S-ischiensis_contig91:198711..1988521695741097.2197628-CDS-S-ischiensis_contig91:198711..198852Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 198712..198852 -
1622817414.5182905-CDS-S-ischiensis_contig91:200630..2007651622817414.5182905-CDS-S-ischiensis_contig91:200630..200765Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 200631..200765 -
1695741097.2322748-CDS-S-ischiensis_contig91:200630..2007651695741097.2322748-CDS-S-ischiensis_contig91:200630..200765Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 200631..200765 -
1622817414.5296643-CDS-S-ischiensis_contig91:202102..2022521622817414.5296643-CDS-S-ischiensis_contig91:202102..202252Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 202103..202252 -
1695741097.243203-CDS-S-ischiensis_contig91:202102..2022521695741097.243203-CDS-S-ischiensis_contig91:202102..202252Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 202103..202252 -
1622817414.5411336-CDS-S-ischiensis_contig91:204199..2044091622817414.5411336-CDS-S-ischiensis_contig91:204199..204409Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 204200..204409 -
1695741097.2534626-CDS-S-ischiensis_contig91:204199..2044091695741097.2534626-CDS-S-ischiensis_contig91:204199..204409Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 204200..204409 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig91.20903.1

>prot_S-ischiensis_contig91.20903.1 ID=prot_S-ischiensis_contig91.20903.1|Name=mRNA_S-ischiensis_contig91.20903.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=212bp
MKHAAVFALGCAIVNTSSAFCPLTPLPVRSRWAWAGSGRPVARARQVLCM
QQLKQQMEGVKVTHLEAVDEEERISLYEFVIEVPGTVTRETKKRVYREVG
KNININGFRPGEIPIFMQPQLFEFTITEIIQDTLLSAVEGHGLELLEGAQ
AGDADIEEDIKEMRREFTPGQPMVYTAKIALRAKEPKSVIESTITGSATS
DDEDDNDAVDE*
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mRNA from alignment at S-ischiensis_contig91:198144..204449-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig91.20903.1 ID=mRNA_S-ischiensis_contig91.20903.1|Name=mRNA_S-ischiensis_contig91.20903.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=6306bp|location=Sequence derived from alignment at S-ischiensis_contig91:198144..204449- (Schizocladia ischiensis KU_0333)
ATATATACGGTGCTCAGTCGAGTCAGGCAACACAAGCGCAATGAAGCACG
CTGCGGTGTTCGCGCTTGGCTGCGCGATCGTCAACACGTCGTCCGCGTTC
TGTCCTCTCACACCGCTGCCCGTCCGGAGCCGTTGGGCGTGGGCCGGGAG
CGGTCGGCCCGTTGCTCGGGCACGGCAAGTGTTGTGCATGCAGCAACTGA
AGCAACAAATGGAGGGTGTGAAGGTTACACACCTGGAGGCTGTGGATGAG
GTGCGTGCTGCAGCGGCAGGATGGAACACTGCAGGGGTACGCTGAGATCG
ACGCGTGCACAGGCGGCGGGGCGGAGTTGCGACTGAGTCATGTGTTTTGT
GCTTCCGGTACCAACTTCGTCAAGTCGGTCACTGCCCTTTGATCCTCCTT
CCATTGTTTTGTCTGTATTAGAGTACGTACCCGCCCATTCTTTGCCCATG
CGCTCAAATGTAGCTTGCTGTGGATGTCTTGATGTTGACTTCTCCCCACC
TCTGCTTGCGGTAGGTGCGTGCTGTTAGCTCAATGAGCATCCCAGCAAGT
AAAGGCATTCGGAGGTGATGTTTGCATGTGCAGTACTACATAGTTCGTTG
AAACCCATCGTTCGGTTTCCATTTGGGTTCAGGCAATTCAGCTCTGGCTT
CTCCCGTCCCTCCACCGCCGCCCCTCCTGCAACAACCGCCAATACCATAC
CCGTTACACCACTGACGACACCAACAACGCGAGCGCGTGAGGTGAACCAT
CCTGTGCGAGCTTGTTCAGGCAGAGGCGAAGAGTACCGCTATTGTGCTTA
GAGTAGTGCCTGTACCACCGCCTGTACTGCTGCAGTACGAAGCACAGTAC
CAATATTTCAGATCGATGTCTACATCTCTTACACGGCGTGCAGAGGAGGC
CATATATATGTATGGTACTCATTGGCTTGTCTTGCGACACAACCTTGCGT
GCAATGCCGACAGCCCCAAGTCGAAACTTCGGGTTTGCCCTCCGACAGGA
GTACCTATTTAGCCATGGACTCTCGCATCCCAATTAGGCCGGTACGGAGC
ATGCCGGGTTTGCACTGGCCAGGCCGTGCCCTGGCCAAGCCCGGAATGAC
ATTTTGCCTTGGCATCAGCAAGCGGAGGAGACAATACGTGTGAAATGAAT
GCCCATATACCATCGTACTTCGAAGTACCTACGAGTACATAGTACGAGAA
CATGGACATGGATATGCCATGGGGCTATGTTAGTGCACGATTTTCATCAA
CACTGCTGCGGTGCTGTAGAGATGCTACAGTACTACAGTTGTACGAGTAG
CATGATATATATACTACAGTTGCAGCATGATCAACAGCCATGGGTGTATG
CAGTACGATACAATCCAAAACATGCACTTGAAGTACACGGAAAACCTCTT
TGTAGGTTTGGGAAGTGGATCGCATATGAAGTAACGCACTGATTGCGCTA
TCATTACGAGTAGTTCGATCACCGAATGAGCTCAGGTTGTGAGCAAGACG
AGACCCCCCCTGATGTCCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCG
TTCTTTCTCTCTCTCTTCTCTTCTCCCCTCTCTGTATATATATCCTATCT
CTCGCGCTCTCTCACTTTCTCCATCTATGGGTCTCTCTAGCGGCACTGCA
TCTACTATTTTTAGGTACCCCAAATCCCCGCGATCGATTGCCGATGACGA
TGATTGACTACTCTTGTATACCATCACGGCTACTACTGTACTGTACAGTA
CAGGAGTATACCGCACACCTACATAGTTCTGTAGCTGCGTGTGTACTCAC
GTCTCTGTGCATGCGCTGGACCCGAACGATCCTCGTCTTTGCTCCTTCTG
ATGGATCGCTGGCCAGCTGTAGCCGAAGCCATTGGCCATGCGTCCTATTG
GACAGAGCACGCCGGGTATTTCACCGACAGACCTTTTGGGCTGCACCATA
CCGGAAATGCCATTGCGCGGAAATTCTTCAACCCGTCACACTCCGCGGTT
TGGCCATGAGCAAGAAGCCATGCAACCCAAACTGTTCTCGGTGTTGATCG
AGTGGGCAATTTTTGTGCGGAAAATCGGCGCACATGCGGGCTCACAGTAC
AGGAGTATACCGCACACCTACTTGTACATCGTTCTGCAGCTGCCGAGAGA
ACGTAGGTCTCATGAATAAAGTGCAGGAATTGCCCCCCGCTCCGCAGGAG
GAGCGTATCTCCCTGTACGAGTTTGTGATTGAGGTGCCCGGCACGGTTAC
CCGGGAGACGAAGAAGAGGGTGTACCGGGAAGTGGGGAAGAACATCAACA
TCAACGGCTTCCGCCCAGGAGAGATCCCCATTTTCATGCAGCCGCAGGTG
AGGGAAGGAGGTCATTCATATACTTCGAAGTAAACTGTAGCGAGGTACAA
TCGCACGTGTGTGAGATTGGGTGTTCTCGTATTTGTAGTTGTCCCATTTC
AGAATTCAGTGTTCTTATACTACTGATTATCACATCAGGAGAGATCCCCA
TCTTCATGTAGCCGCAGGTGAGGGAAGGAGGCGGTGACCCATGTAAACTG
TAACGAGGTACAATCGCACGTGTGTGAGATTGACTGTTCTCGTAGTAGTA
GTTGTCCCATTTAAGAATTGAGTCATTGGTCTCGGGACTACGGCAAGCAC
CACGTGAGTACTTCGAAGTACATATTTAAGAATTGAGTGTTCTTATACTA
CGTAGTATTGGTGATTATCACGTCAAACTAAGAACAAGGAGGGGGGGAAG
AGAGAAAGGAGGATCGCTGGGCCGGGGCCGGGGAGTTTGCCCTGACCGTC
TGGGTTTGTTCAGTCTCAATGCTCAGCTGCCGGAGAACGGGCACTGTACA
TGCATCCAACTATTAGTACATGTACCATATGTGTATATATATGTGTGTGT
GTGTGTAATCACGTTGTGCTTGCCGTAGTCCCAAAGACCATGACCATATA
TGTATACTCGAGTACTCACGTTCAACAGAGCTCGCAGTGGTCCCGAGAGC
ATTGACCGCGGGGCTCGCTGAGACGGAGCGGCGTCAACGGGGTGCTAACT
GCTGTAGCAGTATGCTGCAACAGTGTATACATGCATCGGAGTATGTACTG
CTACATGTAGTACTCTACTTCTCTAGCTCTTGCCGAAGTCCCATTGGCCA
CACGCCTCGACCGAGACAGATATTTAGAAACGTGTGAGTACTTGTACAGA
TATGCTTCGGCAGTAAGTACATGCATTGTGGCCGGCGCAAACCCGGCATG
CTCCGTCCTGGCCTATAGAGACCATACACCAACCACCTCGTCCGAGATGG
AGCAGGTAAGCTACTGCGCTACAGATGTAGGCTACATGTATACTTGGAAG
TACTTGGAAGGGTACACGCCCGCCAAGGAATCCTCGCGGCTTGCCCAGTC
CCACACCTCCGCACGCCCAAACCCCTCCCCGCGCCCCTTCCGATATGCCG
ACGTGTGCGCGTGCCTGCGTGCACGTCCTCGCACGGAGCCCAGCTCTTCG
AGTTTACCATCACCGAGATCATCAATGACACTTTGTTCCCCTTCCGACAC
CGACGTGTGCGCGTGCCTGCATGCACGTCCTCGGGCGGCGGAGCCCAGCT
TTTAGACAACTACTAGTAGGAGAAGAGTGAATCTCACACGCGTGCGATTG
TACCTCGTTGCAATTTATACGAATCACCGCCCAGCTTTTCGAGTTTACCA
TCACGGAGATAATCCAAGACACCTTGTTGTCTGCGGTTGAGGGGCACGGC
CTGGAGCTGCTGGAGGGCGCCCAGGCTGGGGACGCAGACATTGAGGAGGA
CATCAAGGAGATGCGCAGGGTGAGTTTCTTTTCTGTGTACCCAAGTAGCT
AGGGGGCTGAGTTTCAAGATACCCAAGCAGTTAAGGAGGCTGATTTTCCG
TGTACCCAAGTAGTTAGGAGGCTGAGTTTCTGTATACCTAAGTAGTTAGG
AAGCCTTGCATCCCATGCTGGACGACGTGAAGCAGGTGAGCGAGCGGAGC
ATGATTGCTGTACTGATTCATACAAATTGCGGGCCAAGAAGGGCTTCTGG
TGAGGTTCCCGCCTTGCTTAGGTTGTTGGGACGGGGCCCGGAACTCGCAT
GCCCTGAATCGTAAAACAAAAATTGTAACGAGGTACAATCGCACGTGTGT
GAGATTGACTGTTCTCGTACCAGTAGTTTGTCCCATTTAACAATTCAGTG
TTCTTAGGAGGATTGATGTACCTACCGCTACATAAAGTAGTACGGGTACG
TACATTGCTGTACCTATCGCTACACAAGTACTACTTCGAAGTACCAACCA
GCAGCCGCAGCAGCAGTGTCTGTCCCTGGCATGCTTTGACGTACTTCCGG
AGGTAAACACATACTCTAGGCAGTTTGTGCTTTGCTTTTCTGCTCTCTAC
GAGGGGAGGAAGGGCAGCTCTCTGCTGAGGACCCAGTTTTGGGCCGCGCG
GCCCAGAACTCGCTTTATTGTATGTTTGGTAAACAGCTAACTATTTTCCC
GCCATGCTTCTGATACGCCTGGCATTGGCATTTTCTGCAACCTCGCGCGA
TGGTAACTCATCGCTTTCATTGCACCGACGTGTGCCGGCTGCATGGCGCT
CTCAGGAATTCACTACTACTGTAGTACGAGAACAGTCAATCTCACACACG
TGCGATCATACCTCGTTACATTTTTTTCAACGATGTACACAGAGCCGGCC
ACAGGCCGGGTCACAGAGCCGGGCCAGAGCCGGGCCGGGCCGGGCCGGGC
AGGTCGGGGCTCATCTCGCCGGGTACTGGCCCGGCCCGTGAAGTTGACGA
GGCCCGTGACCCGGCCCGTGGAATTTCTCGACCCGAAAGTCCGGTACTGG
TCCGGCCCGTAAAAGCGGGCCGCGCCCGTGACCCGGCCCGTGGAAAACCT
CGACCCGAAAGCCAATCAACGGCCGGAGACCCAGGGTGCGGAAAGAGGCT
TGGTGTGGGCATGCAAGCAGAGCGGCCAGCGACCGTCCGATTTTCATCCG
GATGTCGAAAACGCGTTTAAACCTCAATAAACAGACCGTGACGTGTCGGA
GCAGTGACTGCGCGCGTTCGATATCCGCAGTACACCGTCAATGCCTCACA
CGGAGCGGGCCACGGTCGGGTCACAGAGCCGGGCCAGAGCCGGGCCGGGT
ATTTTCGGGCGGGTCGGGCCGAATTCTGACCCGAAACTCCGGTACTGGCC
CGGCCCGTGAAAGTGAACAATGCCCGTGGCCCTGCCCGTGGAAAAATCGA
CCCGAAAGCCCGGTACTGGCCCGGCCCGTGAAAACTGGCCGGGTCCGTGA
CCCGGCCCGTGGAAACTGTGGCCGGGCCCTTACCCGGCCCGTGGAAACTG
TGGCCGGGCCTGTGACCCGGCCCGTGGACAAAATCTCGACCCGAAAACCC
GGTACTGGCCCGACCCGTGAAAAACGTCCGGGCCCGTGACCCGGCCCGTG
GTGTTCTGAGGCTCTGTGCGCATCCTTGATCTTTTTTAGTTTTTGGATGG
CATGCGAGTTCCGGGCCCCGTCCCAGCAACCTAAGGTGGGGACCTCACCA
GAAGCCCTTCTTCTTTCACCCGTTTCAATTTATATGAATCACCGCAGGAA
TTCACCCCGGGCCAGCCCATGGTCTACACGGCGAAGATAGCGCTGCGGGC
GAAGGAGCCCAAGTCCGTTATCGAGTCCACCATCACAGGGTCCGCCACCA
GCGATGACGAGGACGATAACGACGCCGTCGACGAGTGAGTAGCTCGCTGT
GATTTTAGCCCCGTTGGGGAGAAACAAAGAACGAGAGGGACCCTCTTGCT
TTGCCCCTGCATTGCCACCTGATTGTTGCTTCTTTGCCTGATTCTTATGC
CCTGCGAGTGAAGAGATTGGCTTCTGGCGAGGTCCCCACCTTAGGTTGCT
GGGACGGGGCCCGGAACTCGCGTCTCTCACAATAGTTCAAAAAAAAAAAA
GAAAGGCAACGCCCTCCCCCGGGCCGTCAAATGAGTCCGATGGGTCCATC
ATCCACGGACAGGGTGCCAGCGATGGTGCCCGCTACTTGCCATTTGATGG
GCCGTTTTTGTGCCGACGTGCTTGCCGGTGCATTTTTTGCTCCTGTAGGC
CTGGGCCGAGGACACAACGAACCAGTAATGACAACCATGATACCTTGATG
CAGGGAGTGCTCCGACCATGAAGCGGTTGGTCCTGCCACCGACGTATGAC
TCAGTGCTGCCAGAGCCTGTGGGTGCACGGCCACAGTGCTTCGAAGTACC
TACTTCGTACTTTCCTGCAAACAAGAAGCGGGCGCACGTTGTGGGTTGTC
TCTGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig91:198144..204449-

>mRNA_S-ischiensis_contig91.20903.1 ID=mRNA_S-ischiensis_contig91.20903.1|Name=mRNA_S-ischiensis_contig91.20903.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1272bp|location=Sequence derived from alignment at S-ischiensis_contig91:198144..204449- (Schizocladia ischiensis KU_0333)
ATGAAGCACGCTGCGGTGTTCGCGCTTGGCTGCGCGATCGTCAACACGTC
GTCCGCGTTCTGTCCTCTCACACCGCTGCCCGTCCGGAGCCGTTGGGCGT
GGGCCGGGAGCGGTCGGCCCGTTGCTCGGGCACGGCAAGTGTTGTGCATG
CAGCAACTGAAGCAACAAATGGAGGGTGTGAAGGTTACACACCTGGAGGC
TGTGGATGAGATGAAGCACGCTGCGGTGTTCGCGCTTGGCTGCGCGATCG
TCAACACGTCGTCCGCGTTCTGTCCTCTCACACCGCTGCCCGTCCGGAGC
CGTTGGGCGTGGGCCGGGAGCGGTCGGCCCGTTGCTCGGGCACGGCAAGT
GTTGTGCATGCAGCAACTGAAGCAACAAATGGAGGGTGTGAAGGTTACAC
ACCTGGAGGCTGTGGATGAGGAGGAGCGTATCTCCCTGTACGAGTTTGTG
ATTGAGGTGCCCGGCACGGTTACCCGGGAGACGAAGAAGAGGGTGTACCG
GGAAGTGGGGAAGAACATCAACATCAACGGCTTCCGCCCAGGAGAGATCC
CCATTTTCATGCAGCCGCAGGAGGAGCGTATCTCCCTGTACGAGTTTGTG
ATTGAGGTGCCCGGCACGGTTACCCGGGAGACGAAGAAGAGGGTGTACCG
GGAAGTGGGGAAGAACATCAACATCAACGGCTTCCGCCCAGGAGAGATCC
CCATTTTCATGCAGCCGCAGCTTTTCGAGTTTACCATCACGGAGATAATC
CAAGACACCTTGTTGTCTGCGGTTGAGGGGCACGGCCTGGAGCTGCTGGA
GGGCGCCCAGGCTGGGGACGCAGACATTGAGGAGGACATCAAGGAGATGC
GCAGGCTTTTCGAGTTTACCATCACGGAGATAATCCAAGACACCTTGTTG
TCTGCGGTTGAGGGGCACGGCCTGGAGCTGCTGGAGGGCGCCCAGGCTGG
GGACGCAGACATTGAGGAGGACATCAAGGAGATGCGCAGGGAATTCACCC
CGGGCCAGCCCATGGTCTACACGGCGAAGATAGCGCTGCGGGCGAAGGAG
CCCAAGTCCGTTATCGAGTCCACCATCACAGGGTCCGCCACCAGCGATGA
CGAGGACGATAACGACGCCGTCGACGAGTGAGAATTCACCCCGGGCCAGC
CCATGGTCTACACGGCGAAGATAGCGCTGCGGGCGAAGGAGCCCAAGTCC
GTTATCGAGTCCACCATCACAGGGTCCGCCACCAGCGATGACGAGGACGA
TAACGACGCCGTCGACGAGTGA
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